Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0014108

Physical Location & Seq

Genomic Coordinates Forward (+)

27956381 .. 27956965

Gene Structure 585 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1185300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGAGACCACCGCCAACAGTGGGGCTGTCGGTAGGGGAGATAGTCGAGTTTGGCCTTATCCACCTCTCTCCGCCGCTGCCTTCCCCTTCAACAGGGCTAACGACATGCGTTTCCCACACTTGCCGCTGGTGGCCTTACTCCGGCTTAAAAGAATTTGAGGCTAACGCCGCCATGATCATCATTTTCATTCTCTCTGCTCTCATTTCTGCGTTGGGTCTTAACACCGCCATCCACTGCTTCCTTCGCGGTGGTAGAGGCAACCCTTCTGATTGGGTGGAGGCGAAGTGCGCCATTTGCTTGTCGGAGTTTGTGGATGGGGAAGGGATTAGAGTTTTGCGGAGGTGTAAACATGGGTTTCATGCCCAGTGTATTAACAATGGTTGTCTTCTGACTCCTCTTGTCCAACGTACCGCCGCATGTGCCTTCCTCAGTCTCCATCCCAATCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

150

Amino Acids

16.09

Weight (kDa)

8.13

Isoelectric Point (pI)

35.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	95 - 126	2.8e-06	Ring finger domain
zf-RING_11	PF17123	96 - 124	1.2e-10	RING-like zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0014108)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17245 AT5G47610
fragaria_vesca	FvH4_5g10181
malus_domestica	MD06G1127400.v1.1 MD10G1185300.v1.1 MD14G1142700.v1.1
prunus_persica	Prupe.5G137200_v2.0.a1
pyrus_communis	pycom06g11720
rosa_chinensis	RchiOBHm_Chr7g0188061
rosa_laevigata	RLG00000004730
rosa_multiflora	Rmu_ssc0000422.1_g000018
rosa_roxburghii	Rroxscaffold_3G00266770
rosa_rugosa	Rorug06G0487900
rosa_samantha	Rh7AG092200 Rh7BG093800 Rh7CG093100
rosa_wichuraiana	Rw7G007970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	246
AcsI	RAATTY	1 cut(s)	152
AfaI	GTAC	1 cut(s)	409
AfiI	CCNNNNNNNGG	3 cut(s)	20, 92, 140
AgsI	TTSAA	1 cut(s)	90
Alw26I	GTCTC	1 cut(s)	437
AoxI	GGCC	2 cut(s)	52, 131
ApeKI	GCWGC	1 cut(s)	76
ApoI	RAATTY	1 cut(s)	152
AspLEI	GCGC	1 cut(s)	290
BbsI	GAAGAC	1 cut(s)	377
BbvI	GCAGC	1 cut(s)	63
BccI	CCATC	3 cut(s)	236, 308, 444
BclI	TGATCA	1 cut(s)	174
BcoDI	GTCTC	1 cut(s)	437
BfaI	CTAG	1 cut(s)	448
BisI	GCNGC	5 cut(s)	74, 77, 124, 168, 414
BlsI	GCNGC	5 cut(s)	75, 78, 125, 169, 415
BmrI	ACTGGG	1 cut(s)	358
BmuI	ACTGGG	1 cut(s)	358
BpiI	GAAGAC	1 cut(s)	377
BsaXI	ACNNNNNCTCC	2 cut(s)	269, 299
Bsc4I	CCNNNNNNNGG	3 cut(s)	20, 92, 140
Bse1I	ACTGG	1 cut(s)	364
BseGI	GGATG	3 cut(s)	228, 319, 436
BseLI	CCNNNNNNNGG	3 cut(s)	20, 92, 140
BseMII	CTCAG	1 cut(s)	442
BseNI	ACTGG	1 cut(s)	364
BseRI	GAGGAG	1 cut(s)	384
BseXI	GCAGC	1 cut(s)	63
Bsh1236I	CGCG	1 cut(s)	246
BshFI	GGCC	2 cut(s)	54, 133
BsiSI	CCGG	1 cut(s)	141
BslI	CCNNNNNNNGG	3 cut(s)	20, 92, 140
BsmAI	GTCTC	1 cut(s)	437
BsnI	GGCC	2 cut(s)	54, 133
Bsp143I	GATC	1 cut(s)	174
BspANI	GGCC	2 cut(s)	54, 133
BspCNI	CTCAG	1 cut(s)	441
BspFNI	CGCG	1 cut(s)	246
BsrI	ACTGG	1 cut(s)	364
BssMI	GATC	1 cut(s)	174
Bst4CI	ACNGT	1 cut(s)	19
BstDEI	CTNAG	1 cut(s)	428
BstENI	CCTNNNNNAGG	1 cut(s)	90
BstF5I	GGATG	3 cut(s)	228, 319, 436
BstFNI	CGCG	1 cut(s)	246
BstHHI	GCGC	1 cut(s)	290
BstKTI	GATC	1 cut(s)	177
BstMAI	GTCTC	1 cut(s)	437
BstMBI	GATC	1 cut(s)	174
BstMWI	GCNNNNNNNGC	5 cut(s)	167, 243, 287, 294, 419
BstNSI	RCATGY	2 cut(s)	108, 420
BstUI	CGCG	1 cut(s)	246
BstV1I	GCAGC	1 cut(s)	63
BstV2I	GAAGAC	1 cut(s)	377
BsuRI	GGCC	2 cut(s)	54, 133
BtsCI	GGATG	3 cut(s)	228, 319, 436
BtsI	GCAGTG	1 cut(s)	232
BtsIMutI	CAGTG	3 cut(s)	24, 232, 371
CfoI	GCGC	1 cut(s)	290
Csp6I	GTAC	1 cut(s)	408
CviAII	CATG	5 cut(s)	105, 172, 350, 359, 417
CviJI	RGCY	6 cut(s)	25, 54, 97, 133, 144, 161
CviKI_1	RGCY	6 cut(s)	25, 54, 97, 133, 144, 161
CviQI	GTAC	1 cut(s)	408
DdeI	CTNAG	1 cut(s)	428
DpnI	GATC	1 cut(s)	176
DpnII	GATC	1 cut(s)	174
EciI	GGCGGA	1 cut(s)	60
EcoNI	CCTNNNNNAGG	1 cut(s)	90
FaeI	CATG	5 cut(s)	108, 175, 353, 362, 420
FaiI	YATR	5 cut(s)	106, 173, 351, 360, 418
FatI	CATG	5 cut(s)	104, 171, 349, 358, 416
FbaI	TGATCA	1 cut(s)	174
Fnu4HI	GCNGC	5 cut(s)	74, 77, 124, 168, 414
FokI	GGATG	3 cut(s)	215, 326, 423
Fsp4HI	GCNGC	5 cut(s)	74, 77, 124, 168, 414
FspBI	CTAG	1 cut(s)	448
GlaI	GCGC	1 cut(s)	289
GluI	GCNGC	5 cut(s)	74, 77, 124, 168, 414
HaeIII	GGCC	2 cut(s)	54, 133
HapII	CCGG	1 cut(s)	141
HhaI	GCGC	1 cut(s)	290
Hin1II	CATG	5 cut(s)	108, 175, 353, 362, 420
Hin6I	GCGC	1 cut(s)	288
HinP1I	GCGC	1 cut(s)	288
HinfI	GANTC	1 cut(s)	391
HpaII	CCGG	1 cut(s)	141
Hpy166II	GTNNAC	1 cut(s)	347
Hpy188I	TCNGA	3 cut(s)	268, 304, 390
Hpy8I	GTNNAC	1 cut(s)	347
HpyAV	CCTTC	6 cut(s)	90, 96, 251, 273, 314, 433
HpyCH4III	ACNGT	1 cut(s)	19
HpyCH4IV	ACGT	1 cut(s)	406
HpyF10VI	GCNNNNNNNGC	5 cut(s)	167, 243, 287, 294, 419
HpyF3I	CTNAG	1 cut(s)	428
HpySE526I	ACGT	1 cut(s)	406
Hsp92II	CATG	5 cut(s)	108, 175, 353, 362, 420
HspAI	GCGC	1 cut(s)	288
Ksp22I	TGATCA	1 cut(s)	174
Kzo9I	GATC	1 cut(s)	174
LpnPI	CCDG	4 cut(s)	78, 112, 154, 377
Lsp1109I	GCAGC	1 cut(s)	63
MaeI	CTAG	1 cut(s)	448
MaeII	ACGT	1 cut(s)	406
MalI	GATC	1 cut(s)	176
MboI	GATC	1 cut(s)	174
MboII	GAAGA	1 cut(s)	377
MluCI	AATT	1 cut(s)	152
MlyI	GAGTC	1 cut(s)	385
MmeI	TCCRAC	2 cut(s)	282, 427
MnlI	CCTC	7 cut(s)	74, 151, 248, 271, 333, 405, 437
MseI	TTAA	3 cut(s)	146, 219, 372
MspA1I	CMGCKG	2 cut(s)	76, 126
MspI	CCGG	1 cut(s)	141
MvnI	CGCG	1 cut(s)	246
MwoI	GCNNNNNNNGC	5 cut(s)	167, 243, 287, 294, 419
NdeII	GATC	1 cut(s)	174
NlaIII	CATG	5 cut(s)	108, 175, 353, 362, 420
NspI	RCATGY	2 cut(s)	108, 420
PkrI	GCNGC	5 cut(s)	75, 78, 125, 169, 415
PleI	GAGTC	1 cut(s)	385
PpsI	GAGTC	1 cut(s)	385
RsaI	GTAC	1 cut(s)	409
RsaNI	GTAC	1 cut(s)	408
SaqAI	TTAA	3 cut(s)	146, 219, 372
SatI	GCNGC	5 cut(s)	74, 77, 124, 168, 414
Sau3AI	GATC	1 cut(s)	174
SchI	GAGTC	1 cut(s)	385
SetI	ASST	3 cut(s)	66, 344, 409
Sse9I	AATT	1 cut(s)	152
SspMI	CTAG	1 cut(s)	448
TaaI	ACNGT	1 cut(s)	19
TaiI	ACGT	1 cut(s)	409
TaqI	TCGA	1 cut(s)	45
TasI	AATT	1 cut(s)	152
TauI	GCSGC	4 cut(s)	76, 126, 170, 416
Tru1I	TTAA	3 cut(s)	146, 219, 372
Tru9I	TTAA	3 cut(s)	146, 219, 372
TscAI	CASTG	3 cut(s)	24, 239, 371
TseI	GCWGC	1 cut(s)	76
TspDTI	ATGAA	2 cut(s)	175, 347
TspRI	CASTG	3 cut(s)	24, 239, 371
XagI	CCTNNNNNAGG	1 cut(s)	90
XapI	RAATTY	1 cut(s)	152
XceI	RCATGY	2 cut(s)	108, 420
XspI	CTAG	1 cut(s)	448

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.