RLG00000004730

RING-H2 finger protein ATL79-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0014108
Physical Location & Seq
Forward (+)
61784261 .. 61784932
672 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004730

Sequence Viewer

Length: 672 bp
ATGAGACCACCACCGAGAATACTACTAGAGGCGGCAGTAGCAGTAGCCGAGTTCAGCGGCACAGACCACTTCTCTCCACCACCACTCTCCACCTCGCCACCTCCGACGCCACCGCCATGCGTGGCTCACGCCTGCCGCTGGTGGCCCTACTCGGGCTCTAAAGAGTTCGAGGCCAACGCAGCCATGGTCCTCATCATCCTCCTCTCGGCTCTCATCTGCGCCCTCGGCCTCAACGCCGCCATCCGCTGCTTCCTCCGCGGCACTCACCTAGTGGAGGGGCAGCTCGACCGCCGCGGCAGCAACCCTACCCAGACGCATCACGAGTTGGCTCGCGTGCAGCTCAAGACCAATGCGGCCGCGGCTCCCTGCTTTGATGGGGGACCCACGCTGGTGTATTCGCCGGAGATGAAGGCGGAGCTGGCGGGGGCAGCGGCGGAGTGCGCCATTTGCTTGTCGGAGTTCGTGGATGGGGAGGGGATAAGGATGTTGGAGAGGTGTAAGCATGGGTTCCACGCCCACTGTATACAGGCCTGGCTGTCTTCTCACTCTTCTTGTCCAACGTGCCGTCGCACGTGCCTCCCTCCCTCCCCTCCTCATCCTCCGCCGCCGCCGCCGCCGCAATCCACCGAGGTGGAGGACCAACCGCCCTTGCCGGAAAGTATTGCTCCGTGA

Protein Analysis

224

Amino Acids

23.88

Weight (kDa)

6.18

Isoelectric Point (pI)

59.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 146 - 189 5.5e-14 Ring finger domain
zf-RING_11 PF17123 146 - 175 2.5e-10 RING-like zinc finger
zf-C3HC4_2 PF13923 146 - 188 6.1e-09 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4 PF00097 147 - 188 2e-07 Zinc finger, C3HC4 type (RING finger)
zf-rbx1 PF12678 163 - 189 3.3e-07 RING-H2 zinc finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014108)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G17245 AT5G47610
fragaria_vesca FvH4_5g10181
malus_domestica MD06G1127400.v1.1 MD10G1185300.v1.1 MD14G1142700.v1.1
prunus_persica Prupe.5G137200_v2.0.a1
pyrus_communis pycom06g11720
rosa_chinensis RchiOBHm_Chr7g0188061
rosa_laevigata RLG00000004730
rosa_multiflora Rmu_ssc0000422.1_g000018
rosa_roxburghii Rroxscaffold_3G00266770
rosa_rugosa Rorug06G0487900
rosa_samantha Rh7AG092200 Rh7BG093800 Rh7CG093100
rosa_wichuraiana Rw7G007970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 523
AccII CGCG 4 cut(s) 258, 294, 333, 359
AcoI YGGCCR 1 cut(s) 354
AcvI CACGTG 1 cut(s) 573
AcyI GRCGYC 1 cut(s) 107
AdeI CACNNNGTG 1 cut(s) 271
AfiI CCNNNNNNNGG 4 cut(s) 138, 152, 205, 274
AjnI CCWGG 1 cut(s) 530
AleI CACNNNNGTG 2 cut(s) 389, 629
AluBI AGCT 3 cut(s) 283, 340, 418
AluI AGCT 3 cut(s) 283, 340, 418
Ama87I CYCGRG 1 cut(s) 151
AoxI GGCC 5 cut(s) 143, 171, 226, 354, 528
ApeKI GCWGC 6 cut(s) 179, 246, 280, 297, 337, 428
AspLEI GCGC 2 cut(s) 221, 443
AspS9I GGNCC 4 cut(s) 144, 187, 380, 637
AsuHPI GGTGA 1 cut(s) 257
AvaI CYCGRG 1 cut(s) 151
AvaII GGWCC 3 cut(s) 187, 380, 637
BanII GRGCYC 1 cut(s) 158
BauI CACGAG 1 cut(s) 320
BbrPI CACGTG 1 cut(s) 573
BbsI GAAGAC 1 cut(s) 531
BbvI GCAGC 6 cut(s) 191, 233, 292, 309, 349, 440
BccI CCATC 3 cut(s) 248, 368, 461
BceAI ACGGC 1 cut(s) 549
BciT130I CCWGG 1 cut(s) 532
BfaI CTAG 2 cut(s) 26, 269
Bme1390I CCNGG 1 cut(s) 532
Bme18I GGWCC 3 cut(s) 187, 380, 637
BmeT110I CYCGRG 1 cut(s) 151
BmgT120I GGNCC 4 cut(s) 144, 187, 380, 637
BmiI GGNNCC 4 cut(s) 363, 381, 382, 509
BmrFI CCNGG 1 cut(s) 532
BmsI GCATC 1 cut(s) 325
BpiI GAAGAC 1 cut(s) 531
BpuEI CTTGAG 1 cut(s) 326
BsaAI YACGTR 1 cut(s) 573
BsaHI GRCGYC 1 cut(s) 107
BsaJI CCNNGG 6 cut(s) 183, 223, 256, 292, 357, 627
Bsc4I CCNNNNNNNGG 4 cut(s) 138, 152, 205, 274
BseBI CCWGG 1 cut(s) 532
BseDI CCNNGG 6 cut(s) 183, 223, 256, 292, 357, 627
BseGI GGATG 5 cut(s) 195, 240, 472, 489, 595
BseLI CCNNNNNNNGG 4 cut(s) 138, 152, 205, 274
BseRI GAGGAG 2 cut(s) 191, 582
BseX3I CGGCCG 1 cut(s) 354
BseXI GCAGC 6 cut(s) 191, 233, 292, 309, 349, 440
BsgI GTGCAG 1 cut(s) 356
Bsh1236I CGCG 4 cut(s) 258, 294, 333, 359
Bsh1285I CGRYCG 2 cut(s) 289, 357
BshFI GGCC 5 cut(s) 145, 173, 228, 356, 530
BsiEI CGRYCG 2 cut(s) 289, 357
BsiHKCI CYCGRG 1 cut(s) 151
BsiSI CCGG 2 cut(s) 401, 653
BslFI GGGAC 1 cut(s) 393
BslI CCNNNNNNNGG 4 cut(s) 138, 152, 205, 274
BsmFI GGGAC 1 cut(s) 393
BsnI GGCC 5 cut(s) 145, 173, 228, 356, 530
BsoBI CYCGRG 1 cut(s) 151
Bsp1286I GDGCHC 1 cut(s) 158
Bsp19I CCATGG 1 cut(s) 183
BspANI GGCC 5 cut(s) 145, 173, 228, 356, 530
BspFNI CGCG 4 cut(s) 258, 294, 333, 359
BspLI GGNNCC 4 cut(s) 363, 381, 382, 509
BssECI CCNNGG 6 cut(s) 183, 223, 256, 292, 357, 627
BssNAI GTATAC 1 cut(s) 524
BssNI GRCGYC 1 cut(s) 107
BssSI CACGAG 1 cut(s) 320
BssT1I CCWWGG 1 cut(s) 183
Bst1107I GTATAC 1 cut(s) 524
Bst2BI CACGAG 1 cut(s) 320
Bst2UI CCWGG 1 cut(s) 532
Bst4CI ACNGT 1 cut(s) 521
Bst6I CTCTTC 1 cut(s) 553
BstACI GRCGYC 1 cut(s) 107
BstBAI YACGTR 1 cut(s) 573
BstC8I GCNNGC 4 cut(s) 133, 331, 335, 420
BstDSI CCRYGG 4 cut(s) 183, 256, 292, 357
BstENI CCTNNNNNAGG 1 cut(s) 272
BstF5I GGATG 5 cut(s) 195, 240, 472, 489, 595
BstFNI CGCG 4 cut(s) 258, 294, 333, 359
BstHHI GCGC 2 cut(s) 221, 443
BstMCI CGRYCG 2 cut(s) 289, 357
BstNI CCWGG 1 cut(s) 532
BstSCI CCNGG 1 cut(s) 530
BstUI CGCG 4 cut(s) 258, 294, 333, 359
BstV1I GCAGC 6 cut(s) 191, 233, 292, 309, 349, 440
BstV2I GAAGAC 1 cut(s) 531
BstXI CCANNNNNNTGG 1 cut(s) 631
BstZ17I GTATAC 1 cut(s) 524
BstZI CGGCCG 1 cut(s) 354
BsuRI GGCC 5 cut(s) 145, 173, 228, 356, 530
BtgI CCRYGG 4 cut(s) 183, 256, 292, 357
BtsCI GGATG 5 cut(s) 195, 240, 472, 489, 595
BtsIMutI CAGTG 1 cut(s) 517
Cac8I GCNNGC 4 cut(s) 133, 331, 335, 420
CciNI GCGGCCGC 1 cut(s) 354
CfoI GCGC 2 cut(s) 221, 443
Cfr13I GGNCC 4 cut(s) 144, 187, 380, 637
Cfr42I CCGCGG 3 cut(s) 259, 295, 360
CseI GACGC 2 cut(s) 115, 322
CviAII CATG 3 cut(s) 117, 184, 503
DraIII CACNNNGTG 1 cut(s) 271
EaeI YGGCCR 1 cut(s) 354
EagI CGGCCG 1 cut(s) 354
Eam1104I CTCTTC 1 cut(s) 553
EarI CTCTTC 1 cut(s) 553
EciI GGCGGA 3 cut(s) 428, 449, 591
EclXI CGGCCG 1 cut(s) 354
Eco130I CCWWGG 1 cut(s) 183
Eco147I AGGCCT 1 cut(s) 530
Eco24I GRGCYC 1 cut(s) 158
Eco47I GGWCC 3 cut(s) 187, 380, 637
Eco52I CGGCCG 1 cut(s) 354
Eco72I CACGTG 1 cut(s) 573
Eco88I CYCGRG 1 cut(s) 151
EcoNI CCTNNNNNAGG 1 cut(s) 272
EcoO109I RGGNCCY 1 cut(s) 380
EcoRII CCWGG 1 cut(s) 530
EcoT14I CCWWGG 1 cut(s) 183
EcoT38I GRGCYC 1 cut(s) 158
ErhI CCWWGG 1 cut(s) 183
FaeI CATG 3 cut(s) 120, 187, 506
FaiI YATR 4 cut(s) 118, 185, 504, 524
FaqI GGGAC 1 cut(s) 393
FatI CATG 3 cut(s) 116, 183, 502
FauI CCCGC 1 cut(s) 415
FblI GTMKAC 1 cut(s) 523
FokI GGATG 5 cut(s) 182, 227, 479, 496, 582
FriOI GRGCYC 1 cut(s) 158
FspBI CTAG 2 cut(s) 26, 269
GlaI GCGC 2 cut(s) 220, 442
HaeIII GGCC 5 cut(s) 145, 173, 228, 356, 530
HapII CCGG 2 cut(s) 401, 653
HgaI GACGC 2 cut(s) 115, 322
HhaI GCGC 2 cut(s) 221, 443
Hin1I GRCGYC 1 cut(s) 107
Hin1II CATG 3 cut(s) 120, 187, 506
Hin6I GCGC 2 cut(s) 219, 441
HinP1I GCGC 2 cut(s) 219, 441
HpaII CCGG 2 cut(s) 401, 653
HphI GGTGA 1 cut(s) 257
Hpy166II GTNNAC 1 cut(s) 524
Hpy188I TCNGA 2 cut(s) 105, 457
Hpy188III TCNNGA 2 cut(s) 320, 343
Hpy8I GTNNAC 1 cut(s) 524
Hpy99I CGWCG 2 cut(s) 109, 570
HpyAV CCTTC 1 cut(s) 403
HpyCH4III ACNGT 1 cut(s) 521
HpyCH4IV ACGT 2 cut(s) 560, 572
HpyCH4V TGCA 1 cut(s) 337
HpySE526I ACGT 2 cut(s) 560, 572
Hsp92I GRCGYC 1 cut(s) 107
Hsp92II CATG 3 cut(s) 120, 187, 506
HspAI GCGC 2 cut(s) 219, 441
KflI GGGWCCC 1 cut(s) 380
KspI CCGCGG 3 cut(s) 259, 295, 360
LmnI GCTCC 3 cut(s) 367, 415, 670
Lsp1109I GCAGC 6 cut(s) 191, 233, 292, 309, 349, 440
LweI GCATC 1 cut(s) 325
MaeI CTAG 2 cut(s) 26, 269
MaeII ACGT 2 cut(s) 560, 572
MboII GAAGA 2 cut(s) 531, 540
MhlI GDGCHC 1 cut(s) 158
MmeI TCCRAC 4 cut(s) 128, 435, 468, 581
MslI CAYNNNNRTG 3 cut(s) 115, 389, 629
MspA1I CMGCKG 7 cut(s) 57, 138, 246, 258, 294, 359, 431
MspI CCGG 2 cut(s) 401, 653
MspR9I CCNGG 1 cut(s) 532
MvaI CCWGG 1 cut(s) 532
MvnI CGCG 4 cut(s) 258, 294, 333, 359
NcoI CCATGG 1 cut(s) 183
NlaIII CATG 3 cut(s) 120, 187, 506
NlaIV GGNNCC 4 cut(s) 363, 381, 382, 509
NmeAIII GCCGAG 3 cut(s) 73, 185, 204
NotI GCGGCCGC 1 cut(s) 354
OliI CACNNNNGTG 2 cut(s) 389, 629
PceI AGGCCT 1 cut(s) 530
PcsI WCGNNNNNNNCGW 1 cut(s) 101
PmaCI CACGTG 1 cut(s) 573
PmlI CACGTG 1 cut(s) 573
Ppu21I YACGTR 1 cut(s) 573
PpuMI RGGWCCY 1 cut(s) 380
Psp5II RGGWCCY 1 cut(s) 380
Psp6I CCWGG 1 cut(s) 530
PspCI CACGTG 1 cut(s) 573
PspGI CCWGG 1 cut(s) 530
PspN4I GGNNCC 4 cut(s) 363, 381, 382, 509
PspPI GGNCC 4 cut(s) 144, 187, 380, 637
PspPPI RGGWCCY 1 cut(s) 380
RseI CAYNNNNRTG 3 cut(s) 115, 389, 629
SacII CCGCGG 3 cut(s) 259, 295, 360
Sau96I GGNCC 4 cut(s) 144, 187, 380, 637
ScrFI CCNGG 1 cut(s) 532
SduI GDGCHC 1 cut(s) 158
SfaNI GCATC 1 cut(s) 325
Sfr303I CCGCGG 3 cut(s) 259, 295, 360
SgrBI CCGCGG 3 cut(s) 259, 295, 360
SinI GGWCC 3 cut(s) 187, 380, 637
SmiMI CAYNNNNRTG 3 cut(s) 115, 389, 629
SmlI CTYRAG 1 cut(s) 341
SmoI CTYRAG 1 cut(s) 341
SseBI AGGCCT 1 cut(s) 530
SspMI CTAG 2 cut(s) 26, 269
StuI AGGCCT 1 cut(s) 530
StyD4I CCNGG 1 cut(s) 530
StyI CCWWGG 1 cut(s) 183
TaaI ACNGT 1 cut(s) 521
TaiI ACGT 2 cut(s) 563, 575
TaqI TCGA 2 cut(s) 168, 285
TscAI CASTG 1 cut(s) 524
TseI GCWGC 6 cut(s) 179, 246, 280, 297, 337, 428
TspDTI ATGAA 1 cut(s) 422
TspGWI ACGGA 1 cut(s) 657
TspRI CASTG 1 cut(s) 524
VpaK11BI GGWCC 3 cut(s) 187, 380, 637
XagI CCTNNNNNAGG 1 cut(s) 272
XcmI CCANNNNNNNNNTGG 1 cut(s) 181
XmiI GTMKAC 1 cut(s) 523
XspI CTAG 2 cut(s) 26, 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.