Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0014108

Physical Location & Seq

Genomic Coordinates Forward (+)

5826064 .. 5827230

Gene Structure 1167 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g10181.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGAGAATACTACTAGAGGTGGCAGTAGCAGCAGCAGCAGCATCTGAGTACGGCGGCATAGTCAAACACTTCTCTCCACCGCCACTCTCAACAGCCTCGCCGCCACCAATACCGCCACCATGCGTTACTCACGCTTGCCGCTGGTGGCCCTACTCCGGTTCTAAACAGTTCGAGGCCAACGCTGCCATGGTGCTCATCATCCTCCTCTCCGCTCTCATCTGCGCCCTCGGCCTCAACTCCGTCATCCGCTGCTTCCTCCGCAGCACTCACCTCGTCGACGACGAGGAGCACAACCGCCGCCGCAACAACCCTGATCATGAGTTGGCTCGCATGCAGCTAAAGACCAATGCGGCCGCGGCTCCCTGCTATGACGGGGGGCCCACGCTGGTGTACTCGCCGGAGATGAAGGCGGAGCTGGCGGGAGCCGCGGCGGAGTGCGCCATTTGCTTGTCGGAGTTTGTTGATGGGGAGGGGATAAGGGTGTTGGAGAGGTGTAAGCATGGGTTCCACTCCCACTGTATTCAAGCCTGGCTGTCTTCTCACTCTTCTTGTCCCACGTGCCGTCGCACGTGCCTCCCTCCTTCTCCTCCTCATCCGCCGCAGCAGTCCACCGAGGTGGACCAACCGCCCTTGCCGGAGAGTACTGGTCCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

218

Amino Acids

23.45

Weight (kDa)

6.35

Isoelectric Point (pI)

61.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	145 - 188	3.5e-14	Ring finger domain
zf-RING_11	PF17123	145 - 174	1.3e-10	RING-like zinc finger
zf-C3HC4_2	PF13923	145 - 187	4.2e-09	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	146 - 187	1.1e-07	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	160 - 188	1.7e-07	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014108)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17245 AT5G47610
fragaria_vesca	FvH4_5g10181
malus_domestica	MD06G1127400.v1.1 MD10G1185300.v1.1 MD14G1142700.v1.1
prunus_persica	Prupe.5G137200_v2.0.a1
pyrus_communis	pycom06g11720
rosa_chinensis	RchiOBHm_Chr7g0188061
rosa_laevigata	RLG00000004730
rosa_multiflora	Rmu_ssc0000422.1_g000018
rosa_roxburghii	Rroxscaffold_3G00266770
rosa_rugosa	Rorug06G0487900
rosa_samantha	Rh7AG092200 Rh7BG093800 Rh7CG093100
rosa_wichuraiana	Rw7G007970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	212
AccI	GTMKAC	1 cut(s)	276
AccII	CGCG	2 cut(s)	356, 428
AcoI	YGGCCR	1 cut(s)	351
AcvI	CACGTG	2 cut(s)	558, 570
AfaI	GTAC	3 cut(s)	50, 392, 643
AfiI	CCNNNNNNNGG	1 cut(s)	155
AgsI	TTSAA	1 cut(s)	524
AjnI	CCWGG	1 cut(s)	527
AleI	CACNNNNGTG	2 cut(s)	386, 614
AluBI	AGCT	2 cut(s)	337, 415
AluI	AGCT	2 cut(s)	337, 415
Alw21I	GWGCWC	2 cut(s)	195, 291
AlwNI	CAGNNNCTG	1 cut(s)	44
AoxI	GGCC	5 cut(s)	146, 174, 229, 351, 377
ApaI	GGGCCC	1 cut(s)	381
ApeKI	GCWGC	9 cut(s)	29, 32, 35, 38, 182, 249, 261, 334, 601
AspLEI	GCGC	2 cut(s)	224, 440
AspS9I	GGNCC	5 cut(s)	147, 377, 378, 619, 647
AsuHPI	GGTGA	1 cut(s)	260
AvaII	GGWCC	2 cut(s)	619, 647
BaeGI	GKGCMC	1 cut(s)	381
BanII	GRGCYC	1 cut(s)	381
BbrPI	CACGTG	2 cut(s)	558, 570
BbsI	GAAGAC	1 cut(s)	528
Bbv12I	GWGCWC	2 cut(s)	195, 291
BbvI	GCAGC	9 cut(s)	41, 44, 47, 50, 169, 236, 273, 346, 613
BccI	CCATC	1 cut(s)	458
BceAI	ACGGC	2 cut(s)	67, 546
BcgI	CGANNNNNNTGC	2 cut(s)	253, 287
BciT130I	CCWGG	1 cut(s)	529
BclI	TGATCA	1 cut(s)	313
BfaI	CTAG	1 cut(s)	14
BmcAI	AGTACT	1 cut(s)	643
Bme1390I	CCNGG	1 cut(s)	529
Bme18I	GGWCC	2 cut(s)	619, 647
BmgT120I	GGNCC	5 cut(s)	147, 377, 378, 619, 647
BmiI	GGNNCC	5 cut(s)	360, 378, 379, 424, 506
BmrFI	CCNGG	1 cut(s)	529
BmsI	GCATC	1 cut(s)	50
BpiI	GAAGAC	1 cut(s)	528
BsaAI	YACGTR	2 cut(s)	558, 570
BsaJI	CCNNGG	5 cut(s)	186, 226, 354, 426, 612
BsaWI	WCCGGW	1 cut(s)	155
Bsc4I	CCNNNNNNNGG	1 cut(s)	155
Bse1I	ACTGG	1 cut(s)	649
BseBI	CCWGG	1 cut(s)	529
BseDI	CCNNGG	5 cut(s)	186, 226, 354, 426, 612
BseGI	GGATG	3 cut(s)	198, 243, 592
BseLI	CCNNNNNNNGG	1 cut(s)	155
BseMII	CTCAG	1 cut(s)	36
BseNI	ACTGG	1 cut(s)	649
BseRI	GAGGAG	4 cut(s)	194, 299, 576, 579
BseSI	GKGCMC	1 cut(s)	381
BseX3I	CGGCCG	1 cut(s)	351
BseXI	GCAGC	9 cut(s)	41, 44, 47, 50, 169, 236, 273, 346, 613
Bsh1236I	CGCG	2 cut(s)	356, 428
Bsh1285I	CGRYCG	1 cut(s)	354
BshFI	GGCC	5 cut(s)	148, 176, 231, 353, 379
BsiEI	CGRYCG	1 cut(s)	354
BsiHKAI	GWGCWC	2 cut(s)	195, 291
BsiSI	CCGG	3 cut(s)	156, 398, 635
BslFI	GGGAC	1 cut(s)	537
BslI	CCNNNNNNNGG	1 cut(s)	155
BsmFI	GGGAC	1 cut(s)	537
BsnI	GGCC	5 cut(s)	148, 176, 231, 353, 379
Bsp120I	GGGCCC	1 cut(s)	377
Bsp1286I	GDGCHC	3 cut(s)	195, 291, 381
Bsp143I	GATC	1 cut(s)	313
Bsp19I	CCATGG	1 cut(s)	186
BspANI	GGCC	5 cut(s)	148, 176, 231, 353, 379
BspCNI	CTCAG	1 cut(s)	37
BspFNI	CGCG	2 cut(s)	356, 428
BspHI	TCATGA	1 cut(s)	316
BspLI	GGNNCC	5 cut(s)	360, 378, 379, 424, 506
BsrBI	CCGCTC	1 cut(s)	212
BsrI	ACTGG	1 cut(s)	649
BssECI	CCNNGG	5 cut(s)	186, 226, 354, 426, 612
BssMI	GATC	1 cut(s)	313
BssT1I	CCWWGG	1 cut(s)	186
Bst2UI	CCWGG	1 cut(s)	529
Bst4CI	ACNGT	2 cut(s)	168, 518
Bst6I	CTCTTC	1 cut(s)	550
BstBAI	YACGTR	2 cut(s)	558, 570
BstC8I	GCNNGC	4 cut(s)	136, 328, 332, 417
BstDEI	CTNAG	1 cut(s)	45
BstDSI	CCRYGG	3 cut(s)	186, 354, 426
BstF5I	GGATG	3 cut(s)	198, 243, 592
BstFNI	CGCG	2 cut(s)	356, 428
BstHHI	GCGC	2 cut(s)	224, 440
BstKTI	GATC	1 cut(s)	316
BstMBI	GATC	1 cut(s)	313
BstMCI	CGRYCG	1 cut(s)	354
BstNI	CCWGG	1 cut(s)	529
BstNSI	RCATGY	1 cut(s)	334
BstSCI	CCNGG	1 cut(s)	527
BstSLI	GKGCMC	1 cut(s)	381
BstUI	CGCG	2 cut(s)	356, 428
BstV1I	GCAGC	9 cut(s)	41, 44, 47, 50, 169, 236, 273, 346, 613
BstV2I	GAAGAC	1 cut(s)	528
BstXI	CCANNNNNNTGG	1 cut(s)	616
BstZI	CGGCCG	1 cut(s)	351
BsuRI	GGCC	5 cut(s)	148, 176, 231, 353, 379
BtgI	CCRYGG	3 cut(s)	186, 354, 426
BtsCI	GGATG	3 cut(s)	198, 243, 592
BtsIMutI	CAGTG	1 cut(s)	514
Cac8I	GCNNGC	4 cut(s)	136, 328, 332, 417
CaiI	CAGNNNCTG	1 cut(s)	44
CciI	TCATGA	1 cut(s)	316
CciNI	GCGGCCGC	1 cut(s)	351
CfoI	GCGC	2 cut(s)	224, 440
Cfr13I	GGNCC	5 cut(s)	147, 377, 378, 619, 647
Cfr42I	CCGCGG	2 cut(s)	357, 429
Csp6I	GTAC	3 cut(s)	49, 391, 642
CviAII	CATG	5 cut(s)	120, 187, 317, 331, 500
CviQI	GTAC	3 cut(s)	49, 391, 642
DdeI	CTNAG	1 cut(s)	45
DpnI	GATC	1 cut(s)	315
DpnII	GATC	1 cut(s)	313
EaeI	YGGCCR	1 cut(s)	351
EagI	CGGCCG	1 cut(s)	351
Eam1104I	CTCTTC	1 cut(s)	550
EarI	CTCTTC	1 cut(s)	550
EciI	GGCGGA	3 cut(s)	425, 446, 585
EclXI	CGGCCG	1 cut(s)	351
Eco130I	CCWWGG	1 cut(s)	186
Eco24I	GRGCYC	1 cut(s)	381
Eco47I	GGWCC	2 cut(s)	619, 647
Eco52I	CGGCCG	1 cut(s)	351
Eco72I	CACGTG	2 cut(s)	558, 570
EcoO109I	RGGNCCY	1 cut(s)	377
EcoRII	CCWGG	1 cut(s)	527
EcoT14I	CCWWGG	1 cut(s)	186
EcoT38I	GRGCYC	1 cut(s)	381
ErhI	CCWWGG	1 cut(s)	186
FaeI	CATG	5 cut(s)	123, 190, 320, 334, 503
FaiI	YATR	7 cut(s)	59, 121, 188, 318, 332, 369, 501
FaqI	GGGAC	1 cut(s)	537
FatI	CATG	5 cut(s)	119, 186, 316, 330, 499
FauI	CCCGC	1 cut(s)	412
FbaI	TGATCA	1 cut(s)	313
FblI	GTMKAC	1 cut(s)	276
FokI	GGATG	3 cut(s)	185, 230, 579
FriOI	GRGCYC	1 cut(s)	381
FspBI	CTAG	1 cut(s)	14
GlaI	GCGC	2 cut(s)	223, 439
HaeIII	GGCC	5 cut(s)	148, 176, 231, 353, 379
HapII	CCGG	3 cut(s)	156, 398, 635
HhaI	GCGC	2 cut(s)	224, 440
Hin1II	CATG	5 cut(s)	123, 190, 320, 334, 503
Hin6I	GCGC	2 cut(s)	222, 438
HinP1I	GCGC	2 cut(s)	222, 438
HincII	GTYRAC	1 cut(s)	277
HindII	GTYRAC	1 cut(s)	277
HpaII	CCGG	3 cut(s)	156, 398, 635
HphI	GGTGA	1 cut(s)	260
Hpy166II	GTNNAC	4 cut(s)	277, 391, 609, 619
Hpy188I	TCNGA	2 cut(s)	46, 454
Hpy188III	TCNNGA	1 cut(s)	317
Hpy8I	GTNNAC	4 cut(s)	277, 391, 609, 619
Hpy99I	CGWCG	4 cut(s)	278, 281, 284, 567
HpyAV	CCTTC	2 cut(s)	400, 591
HpyCH4III	ACNGT	2 cut(s)	168, 518
HpyCH4IV	ACGT	2 cut(s)	557, 569
HpyCH4V	TGCA	1 cut(s)	334
HpyF3I	CTNAG	1 cut(s)	45
HpySE526I	ACGT	2 cut(s)	557, 569
Hsp92II	CATG	5 cut(s)	123, 190, 320, 334, 503
HspAI	GCGC	2 cut(s)	222, 438
Ksp22I	TGATCA	1 cut(s)	313
KspI	CCGCGG	2 cut(s)	357, 429
Kzo9I	GATC	1 cut(s)	313
LmnI	GCTCC	4 cut(s)	286, 364, 412, 422
Lsp1109I	GCAGC	9 cut(s)	41, 44, 47, 50, 169, 236, 273, 346, 613
LweI	GCATC	1 cut(s)	50
MaeI	CTAG	1 cut(s)	14
MaeII	ACGT	2 cut(s)	557, 569
MaeIII	GTNAC	1 cut(s)	124
MalI	GATC	1 cut(s)	315
MbiI	CCGCTC	1 cut(s)	212
MboI	GATC	1 cut(s)	313
MboII	GAAGA	2 cut(s)	528, 537
MhlI	GDGCHC	3 cut(s)	195, 291, 381
MmeI	TCCRAC	2 cut(s)	432, 465
MslI	CAYNNNNRTG	2 cut(s)	386, 614
MspA1I	CMGCKG	4 cut(s)	141, 249, 356, 428
MspI	CCGG	3 cut(s)	156, 398, 635
MspR9I	CCNGG	1 cut(s)	529
MvaI	CCWGG	1 cut(s)	529
MvnI	CGCG	2 cut(s)	356, 428
NcoI	CCATGG	1 cut(s)	186
NdeII	GATC	1 cut(s)	313
NlaIII	CATG	5 cut(s)	123, 190, 320, 334, 503
NlaIV	GGNNCC	5 cut(s)	360, 378, 379, 424, 506
NmeAIII	GCCGAG	1 cut(s)	207
NotI	GCGGCCGC	1 cut(s)	351
NspI	RCATGY	1 cut(s)	334
OliI	CACNNNNGTG	2 cut(s)	386, 614
PaeI	GCATGC	1 cut(s)	334
PagI	TCATGA	1 cut(s)	316
PcsI	WCGNNNNNNNCGW	1 cut(s)	279
PmaCI	CACGTG	2 cut(s)	558, 570
PmlI	CACGTG	2 cut(s)	558, 570
Ppu21I	YACGTR	2 cut(s)	558, 570
Psp6I	CCWGG	1 cut(s)	527
PspCI	CACGTG	2 cut(s)	558, 570
PspGI	CCWGG	1 cut(s)	527
PspN4I	GGNNCC	5 cut(s)	360, 378, 379, 424, 506
PspOMI	GGGCCC	1 cut(s)	377
PspPI	GGNCC	5 cut(s)	147, 377, 378, 619, 647
PstNI	CAGNNNCTG	1 cut(s)	44
RsaI	GTAC	3 cut(s)	50, 392, 643
RsaNI	GTAC	3 cut(s)	49, 391, 642
RseI	CAYNNNNRTG	2 cut(s)	386, 614
SacII	CCGCGG	2 cut(s)	357, 429
SalI	GTCGAC	1 cut(s)	275
Sau3AI	GATC	1 cut(s)	313
Sau96I	GGNCC	5 cut(s)	147, 377, 378, 619, 647
ScaI	AGTACT	1 cut(s)	643
ScrFI	CCNGG	1 cut(s)	529
SduI	GDGCHC	3 cut(s)	195, 291, 381
SetI	ASST	8 cut(s)	21, 273, 339, 417, 494, 560, 572, 618
SfaNI	GCATC	1 cut(s)	50
Sfr303I	CCGCGG	2 cut(s)	357, 429
SgrBI	CCGCGG	2 cut(s)	357, 429
SgrDI	CGTCGACG	1 cut(s)	275
SinI	GGWCC	2 cut(s)	619, 647
SmiMI	CAYNNNNRTG	2 cut(s)	386, 614
SphI	GCATGC	1 cut(s)	334
SspMI	CTAG	1 cut(s)	14
StyD4I	CCNGG	1 cut(s)	527
StyI	CCWWGG	1 cut(s)	186
TaaI	ACNGT	2 cut(s)	168, 518
TaiI	ACGT	2 cut(s)	560, 572
TaqI	TCGA	2 cut(s)	171, 276
TatI	WGTACW	2 cut(s)	390, 641
TscAI	CASTG	1 cut(s)	521
TseI	GCWGC	9 cut(s)	29, 32, 35, 38, 182, 249, 261, 334, 601
TspDTI	ATGAA	1 cut(s)	419
TspGWI	ACGGA	2 cut(s)	229, 639
TspRI	CASTG	1 cut(s)	521
VpaK11BI	GGWCC	2 cut(s)	619, 647
XceI	RCATGY	1 cut(s)	334
XcmI	CCANNNNNNNNNTGG	1 cut(s)	184
XmiI	GTMKAC	1 cut(s)	276
XspI	CTAG	1 cut(s)	14
ZrmI	AGTACT	1 cut(s)	643

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.