Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009186

Physical Location & Seq

Genomic Coordinates Forward (+)

19388704 .. 19390937

Gene Structure 2234 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G47890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ATGGCATGGAGAGGAAGCATATCGAAGTCTATGAAAGAGCTTAGGATTCTTCTTTGTCAATCTTCTCCAGCTAGTGCTCCCACCAGAACGTTTGTTGAGAAGAATTACAAAGATTTGAAGTCTCTAAACCCTAAATTACCAATCTTGATCCGTGAATGTAGTGGAGTCCAGCCTCAGATGTGGGCAAGATATGATATGGGTGTGGAGAGGTGTGTAAACTTGGATGGTCTGACAGAGCCACAGATTCTAAAGGCCCTTGAAAACCTTGTGAAATCCGGAGCTACAAAGGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003954 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0008137 GO:0008150 GO:0008152 GO:0016020 GO:0016491 GO:0016651 GO:0016655 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0050136 GO:0055114 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

L51_S25_CI-B8

Protein Analysis

97

Amino Acids

10.85

Weight (kDa)

9.51

Isoelectric Point (pI)

45.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
L51_S25_CI-B8	PF05047	28 - 78	3.8e-19	Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0009186)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47890
fragaria_vesca	FvH4_3g23621
malus_domestica	MD03G1192500.v1.1 MD11G1209000.v1.1
prunus_persica	Prupe.4G224700_v2.0.a1 Prupe.4G224700_v2.0.a1 Prupe.4G224700_v2.0.a1
pyrus_communis	pycom11g18390
rosa_chinensis	RchiOBHm_Chr5g0041661
rosa_laevigata	RLG00000033678
rosa_multiflora	Rmu_sc0000271.1_g000013 Rmu_sc0000706.1_g000019 Rmu_sc0000861.1_g000016 Rmu_sc0004455.1_g000011 Rmu_sc0011648.1_g000010
rosa_roxburghii	Rroxscaffold_1G00038840
rosa_rugosa	Rorug05G0194500
rosa_samantha	Rh5BG285300 Rh5CG317300 Rh5DG294100
rosa_wichuraiana	Rw0G011090 Rw5G026350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	275
AclI	AACGTT	1 cut(s)	89
AclWI	GGATC	1 cut(s)	142
AgsI	TTSAA	2 cut(s)	118, 260
AluBI	AGCT	3 cut(s)	40, 71, 281
AluI	AGCT	3 cut(s)	40, 71, 281
Alw21I	GWGCWC	1 cut(s)	79
Alw26I	GTCTC	1 cut(s)	126
AlwI	GGATC	1 cut(s)	142
Aor13HI	TCCGGA	1 cut(s)	275
AoxI	GGCC	2 cut(s)	252, 288
AspS9I	GGNCC	1 cut(s)	253
Bbv12I	GWGCWC	1 cut(s)	79
BccI	CCATC	1 cut(s)	218
BcoDI	GTCTC	1 cut(s)	126
BfaI	CTAG	1 cut(s)	72
BmgT120I	GGNCC	1 cut(s)	253
BpmI	CTGGAG	1 cut(s)	51
Bpu10I	CCTNAGC	1 cut(s)	41
BsaWI	WCCGGW	1 cut(s)	275
BseAI	TCCGGA	1 cut(s)	275
BseGI	GGATG	1 cut(s)	229
BseMII	CTCAG	1 cut(s)	188
BshFI	GGCC	2 cut(s)	254, 290
BsiHKAI	GWGCWC	1 cut(s)	79
BsiSI	CCGG	1 cut(s)	276
BsmAI	GTCTC	1 cut(s)	126
BsnI	GGCC	2 cut(s)	254, 290
Bsp1286I	GDGCHC	1 cut(s)	79
Bsp13I	TCCGGA	1 cut(s)	275
Bsp143I	GATC	1 cut(s)	147
BspANI	GGCC	2 cut(s)	254, 290
BspCNI	CTCAG	1 cut(s)	187
BspEI	TCCGGA	1 cut(s)	275
BspPI	GGATC	1 cut(s)	142
BssMI	GATC	1 cut(s)	147
BstDEI	CTNAG	2 cut(s)	41, 174
BstF5I	GGATG	1 cut(s)	229
BstKTI	GATC	1 cut(s)	150
BstMAI	GTCTC	1 cut(s)	126
BstMBI	GATC	1 cut(s)	147
BstMWI	GCNNNNNNNGC	1 cut(s)	287
BsuRI	GGCC	2 cut(s)	254, 290
BtsCI	GGATG	1 cut(s)	229
Cfr13I	GGNCC	1 cut(s)	253
CviAII	CATG	1 cut(s)	6
CviJI	RGCY	7 cut(s)	40, 71, 172, 238, 254, 281, 290
CviKI_1	RGCY	7 cut(s)	40, 71, 172, 238, 254, 281, 290
DdeI	CTNAG	2 cut(s)	41, 174
DpnI	GATC	1 cut(s)	149
DpnII	GATC	1 cut(s)	147
Eco147I	AGGCCT	1 cut(s)	290
EcoO109I	RGGNCCY	1 cut(s)	253
FaeI	CATG	1 cut(s)	9
FaiI	YATR	5 cut(s)	7, 20, 32, 192, 197
FatI	CATG	1 cut(s)	5
FokI	GGATG	1 cut(s)	236
FspBI	CTAG	1 cut(s)	72
GsuI	CTGGAG	1 cut(s)	51
HaeIII	GGCC	2 cut(s)	254, 290
HapII	CCGG	1 cut(s)	276
Hin1II	CATG	1 cut(s)	9
HinfI	GANTC	3 cut(s)	46, 165, 244
HpaII	CCGG	1 cut(s)	276
Hpy166II	GTNNAC	1 cut(s)	217
Hpy188I	TCNGA	2 cut(s)	177, 231
Hpy188III	TCNNGA	2 cut(s)	145, 276
Hpy8I	GTNNAC	1 cut(s)	217
HpyCH4IV	ACGT	1 cut(s)	89
HpyF10VI	GCNNNNNNNGC	1 cut(s)	287
HpyF3I	CTNAG	2 cut(s)	41, 174
HpySE526I	ACGT	1 cut(s)	89
Hsp92II	CATG	1 cut(s)	9
Kpn2I	TCCGGA	1 cut(s)	275
Kzo9I	GATC	1 cut(s)	147
LmnI	GCTCC	2 cut(s)	82, 278
LpnPI	CCDG	4 cut(s)	81, 97, 182, 289
MaeI	CTAG	1 cut(s)	72
MaeII	ACGT	1 cut(s)	89
MalI	GATC	1 cut(s)	149
MboI	GATC	1 cut(s)	147
MboII	GAAGA	3 cut(s)	41, 54, 112
MhlI	GDGCHC	1 cut(s)	79
MluCI	AATT	2 cut(s)	103, 134
MlyI	GAGTC	1 cut(s)	174
MnlI	CCTC	3 cut(s)	5, 183, 201
MroI	TCCGGA	1 cut(s)	275
MspI	CCGG	1 cut(s)	276
MwoI	GCNNNNNNNGC	1 cut(s)	287
NdeII	GATC	1 cut(s)	147
NlaIII	CATG	1 cut(s)	9
PceI	AGGCCT	1 cut(s)	290
PfeI	GAWTC	2 cut(s)	46, 244
PleI	GAGTC	1 cut(s)	173
PpsI	GAGTC	1 cut(s)	173
Psp1406I	AACGTT	1 cut(s)	89
PspPI	GGNCC	1 cut(s)	253
Sau3AI	GATC	1 cut(s)	147
Sau96I	GGNCC	1 cut(s)	253
SchI	GAGTC	1 cut(s)	174
SduI	GDGCHC	1 cut(s)	79
SetI	ASST	6 cut(s)	42, 73, 92, 212, 267, 283
Sse9I	AATT	2 cut(s)	103, 134
SseBI	AGGCCT	1 cut(s)	290
SspMI	CTAG	1 cut(s)	72
StuI	AGGCCT	1 cut(s)	290
TaiI	ACGT	1 cut(s)	92
TaqI	TCGA	1 cut(s)	23
TasI	AATT	2 cut(s)	103, 134
TfiI	GAWTC	2 cut(s)	46, 244
TspDTI	ATGAA	1 cut(s)	47
TspGWI	ACGGA	1 cut(s)	140
XspI	CTAG	1 cut(s)	72

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.