Rorug05G0194500

NADH dehydrogenase ubiquinone 1 alpha subcomplex subunit

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
19113755 .. 19117525
3771 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0194500.1

Sequence Viewer

Length: 1416 bp
ATGCCGAAGAAGAGAGGGAGAGAGAGGCATCACAACCCGGAGCCATTTCTGGCCGACGACGATGGTGCCTCTGTGGCCTCCAAGAAGCGGACCAAGTCCAAGCAGCACCAGACCGACGAGACTCTGATTTCGTCGGGCATGAGCGCCAAGATTCTGAAGCAGGCTCAGCTTCAGCAGAGGGAGGTCGAGGACGACGAGAATCGAACCCAAAACCCCAACGCGTTATCGGACATCACCGAGGAGCCGCACGGGGTTGAATCTGATGACGACGATGAGGACGACCCCGATGAGTTCGGTGGGTTTCTTGACAATCGCGGCGAGGATGAAGCGTTTAAAGTGACGAACAGGATGACAAAGGAGATTGGGAAGGAGTATGAGAAAGTATTAGGGAAGGCGGCTGTGGAAGAGGATGAGAAATTACTGGATGCATTTCTTTCGAAGGATGCGGGGCGGCAGCTTACTCTTGCAGACCTGATTGTTGCAAGGATTAAAGAGAATGATTCTAATATCACTCCATCAAATGCCAATTCAGATATGAGGCCTTTGCCTAAATTGGATGCAGACACCATAGAAATCTTCAAGGGGGTTGGCCAGTTTCTTAAAAAGTACACAGCTGGGAAGGTTCCCAAACCCTTTAAACACATCCCTTCAATGAATCAATGGGAAGATGTCCTATATTTAACTGAGCCTGAGAATTGGTCTCCCAATGCAATGTATCAAGCTACAAGAATTTTTGCTTCCAATTTGACTGCGAAGAAGGTAGAACGTTTCTACAAGCTTGTCTTGCTTCCACGTGTGAGAGAAGACATTCGGAAGAACAAGCGCTTGCATTTTGCCCTTTATCAGGCTTTGAAAAAGTCTCTTTACAAGCCTGCTGCCTTTTTCAAAGGAATATTGCTACCTTTGTGTGAGTCAGGAACGTGCAATCTAAGAGAAGCTGTCATAGTTGGGAGCGTCTTACAAAAGGTGTCCATTCCGCCACTTCATTCAAGTGTTGCAGTAATGAAGCTAGCAGACATGGAATACTGTGGTACAACGAGTTATTTTATAAAGCTTCTTTTGGAGAAAAAGTATGCTTTGCCATATCGTGTAATTGATGCTCTTGTTGGACATTTTATGAGATTTATGAATGAAACAAGGGTAATGCCAGTGATATGGCACCAATCACTTCTTGCATTTGTGGAAAGGTACAAAAATGATATACTGAACGAGGATAAAGATAATCTTAGAGTTCTTCTTCAAACTCAAAAGCACGATCTGGTAACTCGTGAAATAAGAAAGGAGCTAGATAATAGCCGCAGTCGTGGTGAGAAGGAGGATGACCTTATGTCAATTGCTTCTCCAGATTCTGTGATGATTAAGCCTGTTGAAGAAGATATGTTTGATATTCCAGAGGTGCCTATGGAGGATGACTAA

Protein Analysis

471

Amino Acids

53.88

Weight (kDa)

5.59

Isoelectric Point (pI)

38.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bystin PF05291 151 - 438 1.9e-130 Bystin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1049
AccB1I GGYRCC 3 cut(s) 65, 1158, 1396
AccII CGCG 2 cut(s) 221, 315
AciI CCGC 8 cut(s) 88, 245, 315, 395, 446, 451, 977, 1297
AclI AACGTT 1 cut(s) 766
AcoI YGGCCR 2 cut(s) 51, 589
AcsI RAATTY 1 cut(s) 729
AcuI CTGAAG 2 cut(s) 155, 176
AcvI CACGTG 1 cut(s) 794
AfaI GTAC 3 cut(s) 608, 1033, 1190
AfeI AGCGCT 1 cut(s) 824
AfiI CCNNNNNNNGG 2 cut(s) 87, 844
AflIII ACRYGT 2 cut(s) 219, 793
AgsI TTSAA 8 cut(s) 257, 580, 651, 853, 886, 990, 1241, 1370
AhdI GACNNNNNGTC 1 cut(s) 1327
AluBI AGCT 9 cut(s) 169, 457, 614, 722, 778, 938, 1009, 1054, 1285
AluI AGCT 9 cut(s) 169, 457, 614, 722, 778, 938, 1009, 1054, 1285
Alw26I GTCTC 3 cut(s) 113, 705, 864
AlwNI CAGNNNCTG 1 cut(s) 1349
Aor51HI AGCGCT 1 cut(s) 824
AoxI GGCC 4 cut(s) 51, 75, 539, 589
ApeKI GCWGC 3 cut(s) 103, 454, 875
ApoI RAATTY 1 cut(s) 729
ArsI GACNNNNNNTTYG 2 cut(s) 112, 144
Asp700I GAANNNNTTC 1 cut(s) 807
AspLEI GCGC 2 cut(s) 146, 825
AspS9I GGNCC 1 cut(s) 90
AsuC2I CCSGG 1 cut(s) 38
AsuHPI GGTGA 2 cut(s) 226, 1319
AsuII TTCGAA 1 cut(s) 437
AsuNHI GCTAGC 1 cut(s) 1009
AvaII GGWCC 1 cut(s) 90
BalI TGGCCA 1 cut(s) 591
BanI GGYRCC 3 cut(s) 65, 1158, 1396
BauI CACGAG 1 cut(s) 1266
BbrPI CACGTG 1 cut(s) 794
BbsI GAAGAC 1 cut(s) 810
BbvI GCAGC 3 cut(s) 115, 466, 862
BccI CCATC 2 cut(s) 56, 523
BcgI CGANNNNNNTGC 4 cut(s) 47, 81, 417, 451
BcnI CCSGG 1 cut(s) 38
BcoDI GTCTC 3 cut(s) 113, 705, 864
BfaI CTAG 2 cut(s) 1010, 1286
BfoI RGCGCY 2 cut(s) 147, 826
BglI GCCNNNNNGGC 1 cut(s) 74
BisI GCNGC 8 cut(s) 104, 245, 316, 396, 452, 455, 876, 1297
BlpI GCTNAGC 1 cut(s) 165
BlsI GCNGC 8 cut(s) 105, 246, 317, 397, 453, 456, 877, 1298
Bme1390I CCNGG 1 cut(s) 38
Bme18I GGWCC 1 cut(s) 90
BmeRI GACNNNNNGTC 1 cut(s) 1327
BmgT120I GGNCC 1 cut(s) 90
BmiI GGNNCC 6 cut(s) 42, 67, 243, 624, 1160, 1398
BmrFI CCNGG 1 cut(s) 38
BmsI GCATC 5 cut(s) 37, 415, 433, 547, 1087
BmtI GCTAGC 1 cut(s) 1013
BpiI GAAGAC 1 cut(s) 810
BpmI CTGGAG 1 cut(s) 1326
Bpu1102I GCTNAGC 1 cut(s) 165
Bpu14I TTCGAA 1 cut(s) 437
BpuMI CCSGG 1 cut(s) 38
BsaAI YACGTR 1 cut(s) 794
BsaI GGTCTC 1 cut(s) 705
BsaJI CCNNGG 1 cut(s) 237
BsaXI ACNNNNNCTCC 2 cut(s) 1055, 1085
Bsc4I CCNNNNNNNGG 2 cut(s) 87, 844
Bse1I ACTGG 3 cut(s) 426, 592, 1148
Bse3DI GCAATG 1 cut(s) 717
BseDI CCNNGG 1 cut(s) 237
BseGI GGATG 9 cut(s) 328, 354, 415, 430, 448, 562, 642, 1324, 1414
BseLI CCNNNNNNNGG 2 cut(s) 87, 844
BseMI GCAATG 1 cut(s) 717
BseMII CTCAG 3 cut(s) 179, 675, 681
BseNI ACTGG 3 cut(s) 426, 592, 1148
BseRI GAGGAG 1 cut(s) 254
BseXI GCAGC 3 cut(s) 115, 466, 862
BseYI CCCAGC 1 cut(s) 614
Bsh1236I CGCG 2 cut(s) 221, 315
BshFI GGCC 4 cut(s) 53, 77, 541, 591
BshNI GGYRCC 3 cut(s) 65, 1158, 1396
BsiSI CCGG 1 cut(s) 38
BslI CCNNNNNNNGG 2 cut(s) 87, 844
BsmAI GTCTC 3 cut(s) 113, 705, 864
BsnI GGCC 4 cut(s) 53, 77, 541, 591
Bso31I GGTCTC 1 cut(s) 705
Bsp119I TTCGAA 1 cut(s) 437
Bsp143I GATC 1 cut(s) 1255
Bsp1720I GCTNAGC 1 cut(s) 165
BspACI CCGC 8 cut(s) 88, 245, 315, 395, 446, 451, 977, 1297
BspANI GGCC 4 cut(s) 53, 77, 541, 591
BspCNI CTCAG 3 cut(s) 178, 676, 682
BspFNI CGCG 2 cut(s) 221, 315
BspLI GGNNCC 6 cut(s) 42, 67, 243, 624, 1160, 1398
BspOI GCTAGC 1 cut(s) 1013
BspT104I TTCGAA 1 cut(s) 437
BspT107I GGYRCC 3 cut(s) 65, 1158, 1396
BspTNI GGTCTC 1 cut(s) 705
BsrDI GCAATG 1 cut(s) 717
BsrI ACTGG 3 cut(s) 426, 592, 1148
BssECI CCNNGG 1 cut(s) 237
BssMI GATC 1 cut(s) 1255
BssSI CACGAG 1 cut(s) 1266
Bst2BI CACGAG 1 cut(s) 1266
Bst4CI ACNGT 1 cut(s) 1028
Bst6I CTCTTC 2 cut(s) 5, 399
BstBAI YACGTR 1 cut(s) 794
BstBI TTCGAA 1 cut(s) 437
BstC8I GCNNGC 4 cut(s) 162, 827, 873, 1011
BstDEI CTNAG 5 cut(s) 165, 684, 690, 929, 1226
BstENI CCTNNNNNAGG 1 cut(s) 842
BstF5I GGATG 9 cut(s) 328, 354, 415, 430, 448, 562, 642, 1324, 1414
BstFNI CGCG 2 cut(s) 221, 315
BstH2I RGCGCY 2 cut(s) 147, 826
BstHHI GCGC 2 cut(s) 146, 825
BstKTI GATC 1 cut(s) 1258
BstMAI GTCTC 3 cut(s) 113, 705, 864
BstMBI GATC 1 cut(s) 1255
BstMWI GCNNNNNNNGC 3 cut(s) 74, 166, 784
BstSCI CCNGG 1 cut(s) 36
BstUI CGCG 2 cut(s) 221, 315
BstV1I GCAGC 3 cut(s) 115, 466, 862
BstV2I GAAGAC 1 cut(s) 810
BstXI CCANNNNNNTGG 1 cut(s) 1155
BsuRI GGCC 4 cut(s) 53, 77, 541, 591
BtsCI GGATG 9 cut(s) 328, 354, 415, 430, 448, 562, 642, 1324, 1414
BtsIMutI CAGTG 1 cut(s) 1155
Cac8I GCNNGC 4 cut(s) 162, 827, 873, 1011
CaiI CAGNNNCTG 1 cut(s) 1349
CfoI GCGC 2 cut(s) 146, 825
Cfr13I GGNCC 1 cut(s) 90
CseI GACGC 1 cut(s) 943
Csp6I GTAC 3 cut(s) 607, 1032, 1189
CviAII CATG 2 cut(s) 139, 1018
CviQI GTAC 3 cut(s) 607, 1032, 1189
DdeI CTNAG 5 cut(s) 165, 684, 690, 929, 1226
DpnI GATC 1 cut(s) 1257
DpnII GATC 1 cut(s) 1255
DraI TTTAAA 2 cut(s) 334, 637
DriI GACNNNNNGTC 1 cut(s) 1327
EaeI YGGCCR 2 cut(s) 51, 589
Eam1104I CTCTTC 2 cut(s) 5, 399
Eam1105I GACNNNNNGTC 1 cut(s) 1327
EarI CTCTTC 2 cut(s) 5, 399
EciI GGCGGA 1 cut(s) 966
Eco147I AGGCCT 1 cut(s) 541
Eco31I GGTCTC 1 cut(s) 705
Eco47I GGWCC 1 cut(s) 90
Eco47III AGCGCT 1 cut(s) 824
Eco57I CTGAAG 2 cut(s) 155, 176
Eco72I CACGTG 1 cut(s) 794
EcoNI CCTNNNNNAGG 1 cut(s) 842
EcoT22I ATGCAT 1 cut(s) 430
FaeI CATG 2 cut(s) 142, 1021
FalI AAGNNNNNCTT 4 cut(s) 767, 799, 1209, 1241
FatI CATG 2 cut(s) 138, 1017
FauI CCCGC 1 cut(s) 439
Fnu4HI GCNGC 8 cut(s) 104, 245, 316, 396, 452, 455, 876, 1297
FokI GGATG 8 cut(s) 335, 361, 422, 437, 455, 569, 629, 1331
Fsp4HI GCNGC 8 cut(s) 104, 245, 316, 396, 452, 455, 876, 1297
FspBI CTAG 2 cut(s) 1010, 1286
GlaI GCGC 2 cut(s) 145, 824
GluI GCNGC 8 cut(s) 104, 245, 316, 396, 452, 455, 876, 1297
GsaI CCCAGC 1 cut(s) 618
GsuI CTGGAG 1 cut(s) 1326
HaeII RGCGCY 2 cut(s) 147, 826
HaeIII GGCC 4 cut(s) 53, 77, 541, 591
HapII CCGG 1 cut(s) 38
HgaI GACGC 1 cut(s) 943
HhaI GCGC 2 cut(s) 146, 825
Hin1II CATG 2 cut(s) 142, 1021
Hin6I GCGC 2 cut(s) 144, 823
HinP1I GCGC 2 cut(s) 144, 823
HindIII AAGCTT 2 cut(s) 776, 1052
HinfI GANTC 8 cut(s) 121, 151, 199, 257, 500, 655, 911, 1346
HpaII CCGG 1 cut(s) 38
HphI GGTGA 2 cut(s) 226, 1319
Hpy166II GTNNAC 1 cut(s) 609
Hpy188I TCNGA 6 cut(s) 126, 156, 229, 262, 532, 813
Hpy188III TCNNGA 5 cut(s) 305, 915, 1268, 1343, 1391
Hpy8I GTNNAC 1 cut(s) 609
Hpy99I CGWCG 6 cut(s) 59, 62, 119, 136, 197, 272
HpyAV CCTTC 7 cut(s) 361, 385, 433, 613, 657, 751, 1306
HpyCH4III ACNGT 1 cut(s) 1028
HpyCH4IV ACGT 3 cut(s) 766, 793, 920
HpyCH4V TGCA 9 cut(s) 428, 467, 482, 560, 710, 829, 924, 998, 1175
HpyF10VI GCNNNNNNNGC 3 cut(s) 74, 166, 784
HpyF3I CTNAG 5 cut(s) 165, 684, 690, 929, 1226
HpySE526I ACGT 3 cut(s) 766, 793, 920
Hsp92II CATG 2 cut(s) 142, 1021
HspAI GCGC 2 cut(s) 144, 823
Kzo9I GATC 1 cut(s) 1255
LmnI GCTCC 4 cut(s) 40, 241, 951, 1282
Lsp1109I GCAGC 3 cut(s) 115, 466, 862
LweI GCATC 5 cut(s) 37, 415, 433, 547, 1087
MaeI CTAG 2 cut(s) 1010, 1286
MaeII ACGT 3 cut(s) 766, 793, 920
MaeIII GTNAC 2 cut(s) 337, 1261
MalI GATC 1 cut(s) 1257
MboI GATC 1 cut(s) 1255
MfeI CAATTG 1 cut(s) 1332
MlsI TGGCCA 1 cut(s) 591
MluCI AATT 8 cut(s) 416, 526, 551, 694, 729, 742, 1092, 1332
MluI ACGCGT 1 cut(s) 219
MluNI TGGCCA 1 cut(s) 591
MlyI GAGTC 2 cut(s) 115, 920
MmeI TCCRAC 1 cut(s) 1087
Mox20I TGGCCA 1 cut(s) 591
Mph1103I ATGCAT 1 cut(s) 430
MroXI GAANNNNTTC 1 cut(s) 807
MscI TGGCCA 1 cut(s) 591
MseI TTAA 6 cut(s) 333, 489, 600, 636, 680, 1359
MslI CAYNNNNRTG 1 cut(s) 990
Msp20I TGGCCA 1 cut(s) 591
MspA1I CMGCKG 1 cut(s) 614
MspI CCGG 1 cut(s) 38
MspR9I CCNGG 1 cut(s) 38
MunI CAATTG 1 cut(s) 1332
MvnI CGCG 2 cut(s) 221, 315
MwoI GCNNNNNNNGC 3 cut(s) 74, 166, 784
NciI CCSGG 1 cut(s) 38
NdeII GATC 1 cut(s) 1255
NheI GCTAGC 1 cut(s) 1009
NlaIII CATG 2 cut(s) 142, 1021
NlaIV GGNNCC 6 cut(s) 42, 67, 243, 624, 1160, 1398
NmuCI GTSAC 1 cut(s) 337
NsiI ATGCAT 1 cut(s) 430
NspV TTCGAA 1 cut(s) 437
PceI AGGCCT 1 cut(s) 541
PcsI WCGNNNNNNNCGW 2 cut(s) 192, 276
PdmI GAANNNNTTC 1 cut(s) 807
PfeI GAWTC 6 cut(s) 151, 199, 257, 500, 655, 1346
PflFI GACNNNGTC 1 cut(s) 94
PkrI GCNGC 8 cut(s) 105, 246, 317, 397, 453, 456, 877, 1298
PleI GAGTC 2 cut(s) 115, 919
PmaCI CACGTG 1 cut(s) 794
PmlI CACGTG 1 cut(s) 794
PpsI GAGTC 2 cut(s) 115, 919
Ppu21I YACGTR 1 cut(s) 794
PsiI TTATAA 1 cut(s) 1049
Psp1406I AACGTT 1 cut(s) 766
PspCI CACGTG 1 cut(s) 794
PspFI CCCAGC 1 cut(s) 614
PspN4I GGNNCC 6 cut(s) 42, 67, 243, 624, 1160, 1398
PspPI GGNCC 1 cut(s) 90
PstNI CAGNNNCTG 1 cut(s) 1349
PsyI GACNNNGTC 1 cut(s) 94
PvuII CAGCTG 1 cut(s) 614
RsaI GTAC 3 cut(s) 608, 1033, 1190
RsaNI GTAC 3 cut(s) 607, 1032, 1189
RseI CAYNNNNRTG 1 cut(s) 990
SaqAI TTAA 6 cut(s) 333, 489, 600, 636, 680, 1359
SatI GCNGC 8 cut(s) 104, 245, 316, 396, 452, 455, 876, 1297
Sau3AI GATC 1 cut(s) 1255
Sau96I GGNCC 1 cut(s) 90
SchI GAGTC 2 cut(s) 115, 920
ScrFI CCNGG 1 cut(s) 38
SfaNI GCATC 5 cut(s) 37, 415, 433, 547, 1087
SfuI TTCGAA 1 cut(s) 437
SinI GGWCC 1 cut(s) 90
SmiMI CAYNNNNRTG 1 cut(s) 990
Sse9I AATT 8 cut(s) 416, 526, 551, 694, 729, 742, 1092, 1332
SseBI AGGCCT 1 cut(s) 541
SsiI CCGC 8 cut(s) 88, 245, 315, 395, 446, 451, 977, 1297
SspI AATATT 1 cut(s) 894
SspMI CTAG 2 cut(s) 1010, 1286
StuI AGGCCT 1 cut(s) 541
StyD4I CCNGG 1 cut(s) 36
TaaI ACNGT 1 cut(s) 1028
TaiI ACGT 3 cut(s) 769, 796, 923
TaqI TCGA 3 cut(s) 186, 202, 437
TaqII GACCGA 1 cut(s) 128
TasI AATT 8 cut(s) 416, 526, 551, 694, 729, 742, 1092, 1332
TatI WGTACW 1 cut(s) 606
TauI GCSGC 5 cut(s) 247, 318, 398, 454, 1299
TfiI GAWTC 6 cut(s) 151, 199, 257, 500, 655, 1346
Tru1I TTAA 6 cut(s) 333, 489, 600, 636, 680, 1359
Tru9I TTAA 6 cut(s) 333, 489, 600, 636, 680, 1359
TscAI CASTG 1 cut(s) 1155
TseFI GTSAC 1 cut(s) 337
TseI GCWGC 3 cut(s) 103, 454, 875
Tsp45I GTSAC 1 cut(s) 337
TspDTI ATGAA 6 cut(s) 339, 668, 974, 1019, 1142, 1146
TspRI CASTG 1 cut(s) 1155
Tth111I GACNNNGTC 1 cut(s) 94
VpaK11BI GGWCC 1 cut(s) 90
XagI CCTNNNNNAGG 1 cut(s) 842
XapI RAATTY 1 cut(s) 729
XmnI GAANNNNTTC 1 cut(s) 807
XspI CTAG 2 cut(s) 1010, 1286
Zsp2I ATGCAT 1 cut(s) 430
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.