Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0009186

Physical Location & Seq

Genomic Coordinates Reverse (-)

56348687 .. 56351235

Gene Structure 2549 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00038840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGGCATGGAGGGGAAGTCTATCTCGGAACTTAAAGGAGCTTAGGATCCTACTCTGCCAGTCATCTCCTTCAAGCGCCACCACCAGAACATTTGTGGAGAAGAATTACAAGGATCTCAAGAGTCTGAACCCCAAATTGCCCATCTTGATTCGCGAGAGCAGTGGGATTGAGCCTCAGCTATGGGCTAGATATGGTTGTGGTTACCATCTTGATGATGATTATGTGGCTTTTCAACCAAAGGCAAAACTCCCATTGACCACTGAAACACTGCAACCTTCTAAAGAATTCACATTAAAAGCAAAAGCCATAACAGAAAACTTGGGTGTTGAGAGGGGTGTCCGGCTCGAAGGTTTGACAGAGCAACAGATCTCAAAAGCACTTGAGGACCTTGTCAAAGTGGGGAGTCTCTTAAAGCCTGATGGGATGATGGGTTTGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003954 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0008137 GO:0008150 GO:0008152 GO:0016020 GO:0016491 GO:0016651 GO:0016655 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0050136 GO:0055114 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

L51_S25_CI-B8

Protein Analysis

146

Amino Acids

16.35

Weight (kDa)

9.25

Isoelectric Point (pI)

43.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
L51_S25_CI-B8	PF05047	28 - 67	5.5e-13	Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0009186)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47890
fragaria_vesca	FvH4_3g23621
malus_domestica	MD03G1192500.v1.1 MD11G1209000.v1.1
prunus_persica	Prupe.4G224700_v2.0.a1 Prupe.4G224700_v2.0.a1 Prupe.4G224700_v2.0.a1
pyrus_communis	pycom11g18390
rosa_chinensis	RchiOBHm_Chr5g0041661
rosa_laevigata	RLG00000033678
rosa_multiflora	Rmu_sc0000271.1_g000013 Rmu_sc0000706.1_g000019 Rmu_sc0000861.1_g000016 Rmu_sc0004455.1_g000011 Rmu_sc0011648.1_g000010
rosa_roxburghii	Rroxscaffold_1G00038840
rosa_rugosa	Rorug05G0194500
rosa_samantha	Rh5BG285300 Rh5CG317300 Rh5DG294100
rosa_wichuraiana	Rw0G011090 Rw5G026350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	153
AclWI	GGATC	3 cut(s)	40, 53, 120
AcsI	RAATTY	1 cut(s)	284
AgsI	TTSAA	3 cut(s)	72, 233, 436
AluBI	AGCT	2 cut(s)	40, 178
AluI	AGCT	2 cut(s)	40, 178
Alw26I	GTCTC	1 cut(s)	410
AlwI	GGATC	3 cut(s)	40, 53, 120
ApoI	RAATTY	1 cut(s)	284
AspLEI	GCGC	1 cut(s)	77
AspS9I	GGNCC	1 cut(s)	385
AvaII	GGWCC	1 cut(s)	385
BamHI	GGATCC	1 cut(s)	45
BbvCI	CCTCAGC	1 cut(s)	174
BccI	CCATC	4 cut(s)	149, 213, 413, 421
BcoDI	GTCTC	1 cut(s)	410
BfaI	CTAG	1 cut(s)	186
BfoI	RGCGCY	1 cut(s)	78
BglII	AGATCT	1 cut(s)	366
Bme18I	GGWCC	1 cut(s)	385
BmgT120I	GGNCC	1 cut(s)	385
BmiI	GGNNCC	1 cut(s)	47
Bpu10I	CCTNAGC	2 cut(s)	41, 174
BpuEI	CTTGAG	2 cut(s)	101, 401
BsaXI	ACNNNNNCTCC	1 cut(s)	31
Bse1I	ACTGG	1 cut(s)	58
BseGI	GGATG	1 cut(s)	429
BseMII	CTCAG	1 cut(s)	188
BseNI	ACTGG	1 cut(s)	58
Bsh1236I	CGCG	1 cut(s)	153
BsiSI	CCGG	1 cut(s)	340
BsmAI	GTCTC	1 cut(s)	410
Bsp143I	GATC	3 cut(s)	45, 112, 366
Bsp68I	TCGCGA	1 cut(s)	153
BspCNI	CTCAG	1 cut(s)	187
BspFNI	CGCG	1 cut(s)	153
BspLI	GGNNCC	1 cut(s)	47
BspPI	GGATC	3 cut(s)	40, 53, 120
BsrI	ACTGG	1 cut(s)	58
BssMI	GATC	3 cut(s)	45, 112, 366
BstDEI	CTNAG	2 cut(s)	41, 174
BstEII	GGTNACC	1 cut(s)	200
BstF5I	GGATG	1 cut(s)	429
BstFNI	CGCG	1 cut(s)	153
BstH2I	RGCGCY	1 cut(s)	78
BstHHI	GCGC	1 cut(s)	77
BstKTI	GATC	3 cut(s)	48, 115, 369
BstMAI	GTCTC	1 cut(s)	410
BstMBI	GATC	3 cut(s)	45, 112, 366
BstPI	GGTNACC	1 cut(s)	200
BstUI	CGCG	1 cut(s)	153
BstX2I	RGATCY	3 cut(s)	45, 112, 366
BstYI	RGATCY	3 cut(s)	45, 112, 366
BtsCI	GGATG	1 cut(s)	429
BtsI	GCAGTG	2 cut(s)	166, 266
BtsIMutI	CAGTG	3 cut(s)	166, 258, 266
BtuMI	TCGCGA	1 cut(s)	153
CfoI	GCGC	1 cut(s)	77
Cfr13I	GGNCC	1 cut(s)	385
CviAII	CATG	1 cut(s)	6
CviJI	RGCY	8 cut(s)	40, 172, 178, 185, 227, 305, 343, 415
CviKI_1	RGCY	8 cut(s)	40, 172, 178, 185, 227, 305, 343, 415
DdeI	CTNAG	2 cut(s)	41, 174
DpnI	GATC	3 cut(s)	47, 114, 368
DpnII	GATC	3 cut(s)	45, 112, 366
Eco47I	GGWCC	1 cut(s)	385
Eco91I	GGTNACC	1 cut(s)	200
EcoO109I	RGGNCCY	1 cut(s)	385
EcoO65I	GGTNACC	1 cut(s)	200
EcoRI	GAATTC	1 cut(s)	284
FaeI	CATG	1 cut(s)	9
FaiI	YATR	5 cut(s)	7, 181, 192, 222, 308
FatI	CATG	1 cut(s)	5
FokI	GGATG	1 cut(s)	436
FspBI	CTAG	1 cut(s)	186
GlaI	GCGC	1 cut(s)	76
HaeII	RGCGCY	1 cut(s)	78
HapII	CCGG	1 cut(s)	340
HhaI	GCGC	1 cut(s)	77
Hin1II	CATG	1 cut(s)	9
Hin6I	GCGC	1 cut(s)	75
HinP1I	GCGC	1 cut(s)	75
HinfI	GANTC	3 cut(s)	121, 148, 403
HpaII	CCGG	1 cut(s)	340
Hpy188I	TCNGA	2 cut(s)	27, 126
Hpy188III	TCNNGA	4 cut(s)	118, 145, 152, 209
HpyAV	CCTTC	3 cut(s)	78, 285, 341
HpyCH4V	TGCA	1 cut(s)	271
HpyF3I	CTNAG	2 cut(s)	41, 174
Hsp92II	CATG	1 cut(s)	9
HspAI	GCGC	1 cut(s)	75
Kzo9I	GATC	3 cut(s)	45, 112, 366
LmnI	GCTCC	1 cut(s)	37
LpnPI	CCDG	4 cut(s)	71, 97, 353, 429
MaeI	CTAG	1 cut(s)	186
MaeIII	GTNAC	1 cut(s)	200
MalI	GATC	3 cut(s)	47, 114, 368
MboI	GATC	3 cut(s)	45, 112, 366
MboII	GAAGA	1 cut(s)	112
MflI	RGATCY	3 cut(s)	45, 112, 366
MluCI	AATT	3 cut(s)	103, 134, 284
MlyI	GAGTC	2 cut(s)	130, 412
MnlI	CCTC	4 cut(s)	3, 183, 324, 376
MseI	TTAA	3 cut(s)	32, 293, 410
MslI	CAYNNNNRTG	1 cut(s)	210
MspI	CCGG	1 cut(s)	340
MvnI	CGCG	1 cut(s)	153
NdeII	GATC	3 cut(s)	45, 112, 366
NlaIII	CATG	1 cut(s)	9
NlaIV	GGNNCC	1 cut(s)	47
NruI	TCGCGA	1 cut(s)	153
PfeI	GAWTC	1 cut(s)	148
PflFI	GACNNNGTC	1 cut(s)	389
PleI	GAGTC	2 cut(s)	129, 411
PpsI	GAGTC	2 cut(s)	129, 411
PpuMI	RGGWCCY	1 cut(s)	385
Psp5II	RGGWCCY	1 cut(s)	385
PspEI	GGTNACC	1 cut(s)	200
PspN4I	GGNNCC	1 cut(s)	47
PspPI	GGNCC	1 cut(s)	385
PspPPI	RGGWCCY	1 cut(s)	385
PsuI	RGATCY	3 cut(s)	45, 112, 366
PsyI	GACNNNGTC	1 cut(s)	389
RruI	TCGCGA	1 cut(s)	153
RseI	CAYNNNNRTG	1 cut(s)	210
SaqAI	TTAA	3 cut(s)	32, 293, 410
Sau3AI	GATC	3 cut(s)	45, 112, 366
Sau96I	GGNCC	1 cut(s)	385
SchI	GAGTC	2 cut(s)	130, 412
SetI	ASST	5 cut(s)	42, 180, 277, 352, 390
SinI	GGWCC	1 cut(s)	385
SmiMI	CAYNNNNRTG	1 cut(s)	210
SmlI	CTYRAG	2 cut(s)	116, 380
SmoI	CTYRAG	2 cut(s)	116, 380
Sse9I	AATT	3 cut(s)	103, 134, 284
SspMI	CTAG	1 cut(s)	186
TaqI	TCGA	1 cut(s)	345
TasI	AATT	3 cut(s)	103, 134, 284
TfiI	GAWTC	1 cut(s)	148
Tru1I	TTAA	3 cut(s)	32, 293, 410
Tru9I	TTAA	3 cut(s)	32, 293, 410
TscAI	CASTG	3 cut(s)	166, 265, 273
TspRI	CASTG	3 cut(s)	166, 265, 273
Tth111I	GACNNNGTC	1 cut(s)	389
VpaK11BI	GGWCC	1 cut(s)	385
XapI	RAATTY	1 cut(s)	284
XcmI	CCANNNNNNNNNTGG	1 cut(s)	91
XspI	CTAG	1 cut(s)	186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.