Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0009186

Physical Location & Seq

Genomic Coordinates Reverse (-)

30465212 .. 30467584

Gene Structure 2373 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1209000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGGCATGGAGAGGGAAGCTATCTCAGAACTTGAAGGAGCTTAGGGTTTTGCTCTGCCAATCGTCCCCTTCAAGCGCATCCACCAGAGCATTTGTGGAGAAGAATTACAAGGATCTGAAGAGTGCAAACCCCAAATTGCCCATCTTGATTCGTGAATGCAGAGGGATTGAGCCTCAGTTGTGGGCTAGATATGACATGGGTGTTGAGAGGGGCGTTCGACTGGAAGGTTTGACAGAGCCACAGATCTCGAAAGCACTAGAGGAACTGGTTACAGTGGGGGAGTCTCTAAAGGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003954 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0008137 GO:0008150 GO:0008152 GO:0016020 GO:0016491 GO:0016651 GO:0016655 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0050136 GO:0055114 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

L51_S25_CI-B8

Protein Analysis

99

Amino Acids

11.03

Weight (kDa)

9.3

Isoelectric Point (pI)

48.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
L51_S25_CI-B8	PF05047	28 - 78	8.4e-19	Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0009186)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47890
fragaria_vesca	FvH4_3g23621
malus_domestica	MD03G1192500.v1.1 MD11G1209000.v1.1
prunus_persica	Prupe.4G224700_v2.0.a1 Prupe.4G224700_v2.0.a1 Prupe.4G224700_v2.0.a1
pyrus_communis	pycom11g18390
rosa_chinensis	RchiOBHm_Chr5g0041661
rosa_laevigata	RLG00000033678
rosa_multiflora	Rmu_sc0000271.1_g000013 Rmu_sc0000706.1_g000019 Rmu_sc0000861.1_g000016 Rmu_sc0004455.1_g000011 Rmu_sc0011648.1_g000010
rosa_roxburghii	Rroxscaffold_1G00038840
rosa_rugosa	Rorug05G0194500
rosa_samantha	Rh5BG285300 Rh5CG317300 Rh5DG294100
rosa_wichuraiana	Rw0G011090 Rw5G026350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	120
AcuI	CTGAAG	1 cut(s)	137
AgsI	TTSAA	2 cut(s)	34, 72
AluBI	AGCT	2 cut(s)	19, 40
AluI	AGCT	2 cut(s)	19, 40
Alw26I	GTCTC	1 cut(s)	288
AlwI	GGATC	1 cut(s)	120
AoxI	GGCC	1 cut(s)	291
AspLEI	GCGC	1 cut(s)	77
BccI	CCATC	1 cut(s)	149
BcoDI	GTCTC	1 cut(s)	288
BfaI	CTAG	2 cut(s)	186, 257
BglII	AGATCT	1 cut(s)	243
BmsI	GCATC	1 cut(s)	86
Bpu10I	CCTNAGC	1 cut(s)	41
Bse1I	ACTGG	2 cut(s)	225, 270
BseGI	GGATG	1 cut(s)	77
BseMII	CTCAG	2 cut(s)	38, 188
BseNI	ACTGG	2 cut(s)	225, 270
BshFI	GGCC	1 cut(s)	293
BslFI	GGGAC	1 cut(s)	49
BsmAI	GTCTC	1 cut(s)	288
BsmFI	GGGAC	1 cut(s)	49
BsmI	GAATGC	1 cut(s)	161
BsnI	GGCC	1 cut(s)	293
Bsp143I	GATC	2 cut(s)	112, 243
BspANI	GGCC	1 cut(s)	293
BspCNI	CTCAG	2 cut(s)	37, 187
BspPI	GGATC	1 cut(s)	120
BsrI	ACTGG	2 cut(s)	225, 270
BssMI	GATC	2 cut(s)	112, 243
Bst4CI	ACNGT	1 cut(s)	274
Bst6I	CTCTTC	1 cut(s)	113
BstDEI	CTNAG	3 cut(s)	24, 41, 174
BstF5I	GGATG	1 cut(s)	77
BstHHI	GCGC	1 cut(s)	77
BstKTI	GATC	2 cut(s)	115, 246
BstMAI	GTCTC	1 cut(s)	288
BstMBI	GATC	2 cut(s)	112, 243
BstX2I	RGATCY	2 cut(s)	112, 243
BstYI	RGATCY	2 cut(s)	112, 243
BsuRI	GGCC	1 cut(s)	293
BtsCI	GGATG	1 cut(s)	77
BtsIMutI	CAGTG	1 cut(s)	279
CfoI	GCGC	1 cut(s)	77
CviAII	CATG	2 cut(s)	6, 196
CviJI	RGCY	6 cut(s)	19, 40, 172, 185, 238, 293
CviKI_1	RGCY	6 cut(s)	19, 40, 172, 185, 238, 293
DdeI	CTNAG	3 cut(s)	24, 41, 174
DpnI	GATC	2 cut(s)	114, 245
DpnII	GATC	2 cut(s)	112, 243
Eam1104I	CTCTTC	1 cut(s)	113
EarI	CTCTTC	1 cut(s)	113
Eco147I	AGGCCT	1 cut(s)	293
Eco57I	CTGAAG	1 cut(s)	137
FaeI	CATG	2 cut(s)	9, 199
FaiI	YATR	3 cut(s)	7, 192, 197
FaqI	GGGAC	1 cut(s)	49
FatI	CATG	2 cut(s)	5, 195
FokI	GGATG	1 cut(s)	64
FspBI	CTAG	2 cut(s)	186, 257
GlaI	GCGC	1 cut(s)	76
HaeIII	GGCC	1 cut(s)	293
HhaI	GCGC	1 cut(s)	77
Hin1II	CATG	2 cut(s)	9, 199
Hin6I	GCGC	1 cut(s)	75
HinP1I	GCGC	1 cut(s)	75
HinfI	GANTC	2 cut(s)	148, 281
Hpy188I	TCNGA	2 cut(s)	27, 117
Hpy188III	TCNNGA	3 cut(s)	145, 152, 247
HpyAV	CCTTC	3 cut(s)	28, 78, 218
HpyCH4III	ACNGT	1 cut(s)	274
HpyCH4V	TGCA	2 cut(s)	125, 159
HpyF3I	CTNAG	3 cut(s)	24, 41, 174
Hsp92II	CATG	2 cut(s)	9, 199
HspAI	GCGC	1 cut(s)	75
Kzo9I	GATC	2 cut(s)	112, 243
LmnI	GCTCC	1 cut(s)	37
LpnPI	CCDG	3 cut(s)	97, 206, 251
LweI	GCATC	1 cut(s)	86
MaeI	CTAG	2 cut(s)	186, 257
MaeIII	GTNAC	1 cut(s)	268
MalI	GATC	2 cut(s)	114, 245
MboI	GATC	2 cut(s)	112, 243
MboII	GAAGA	2 cut(s)	112, 130
MflI	RGATCY	2 cut(s)	112, 243
MluCI	AATT	2 cut(s)	103, 134
MlyI	GAGTC	1 cut(s)	290
MnlI	CCTC	5 cut(s)	5, 155, 183, 201, 253
Mva1269I	GAATGC	1 cut(s)	161
NdeII	GATC	2 cut(s)	112, 243
NlaIII	CATG	2 cut(s)	9, 199
PceI	AGGCCT	1 cut(s)	293
PctI	GAATGC	1 cut(s)	161
PfeI	GAWTC	1 cut(s)	148
PleI	GAGTC	1 cut(s)	289
PpsI	GAGTC	1 cut(s)	289
PsuI	RGATCY	2 cut(s)	112, 243
Sau3AI	GATC	2 cut(s)	112, 243
SchI	GAGTC	1 cut(s)	290
SetI	ASST	3 cut(s)	21, 42, 229
SfaNI	GCATC	1 cut(s)	86
Sse9I	AATT	2 cut(s)	103, 134
SseBI	AGGCCT	1 cut(s)	293
SspMI	CTAG	2 cut(s)	186, 257
StuI	AGGCCT	1 cut(s)	293
TaaI	ACNGT	1 cut(s)	274
TaqI	TCGA	2 cut(s)	217, 248
TasI	AATT	2 cut(s)	103, 134
TfiI	GAWTC	1 cut(s)	148
TscAI	CASTG	1 cut(s)	279
TspRI	CASTG	1 cut(s)	279
XcmI	CCANNNNNNNNNTGG	1 cut(s)	91
XspI	CTAG	2 cut(s)	186, 257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.