Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0009186

Physical Location & Seq

Genomic Coordinates Forward (+)

16729447 .. 16732038

Gene Structure 2592 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g23621.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGGCATGGAGGGGAAATCTATCTCGGAACTTAAAGGAGCTCAGGATCCTACTCTGCCAGTCTTCTCCTTCCAGCTTCACCACCAGGACATTTGTGGAGAATAATTACAAGGATCTCAAGAAGTTGAACCCCAAATTGCCCATCTTGATTCGCGAGGCCAGTGGGATTGAGCCTCAGCTCTGGGCTCGTTATGACTTGGGTGTTGAGAGGGGTGTCCGGCTGGAAGGTTTGACAGAGCAACAGATCTCGAAAGCGCTCCAGGACCTTGTCAAAGTGGGGGAGTCTCTGAAAGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003954 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0008137 GO:0008150 GO:0008152 GO:0016020 GO:0016491 GO:0016651 GO:0016655 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0050136 GO:0055114 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

L51_S25_CI-B8

Protein Analysis

99

Amino Acids

11.17

Weight (kDa)

9.66

Isoelectric Point (pI)

50.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
L51_S25_CI-B8	PF05047	28 - 78	1.1e-16	Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0009186)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47890
fragaria_vesca	FvH4_3g23621
malus_domestica	MD03G1192500.v1.1 MD11G1209000.v1.1
prunus_persica	Prupe.4G224700_v2.0.a1 Prupe.4G224700_v2.0.a1 Prupe.4G224700_v2.0.a1
pyrus_communis	pycom11g18390
rosa_chinensis	RchiOBHm_Chr5g0041661
rosa_laevigata	RLG00000033678
rosa_multiflora	Rmu_sc0000271.1_g000013 Rmu_sc0000706.1_g000019 Rmu_sc0000861.1_g000016 Rmu_sc0004455.1_g000011 Rmu_sc0011648.1_g000010
rosa_roxburghii	Rroxscaffold_1G00038840
rosa_rugosa	Rorug05G0194500
rosa_samantha	Rh5BG285300 Rh5CG317300 Rh5DG294100
rosa_wichuraiana	Rw0G011090 Rw5G026350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	153
AclWI	GGATC	3 cut(s)	40, 53, 120
AfeI	AGCGCT	1 cut(s)	255
AgsI	TTSAA	1 cut(s)	127
AjnI	CCWGG	2 cut(s)	83, 258
AluBI	AGCT	3 cut(s)	40, 75, 178
AluI	AGCT	3 cut(s)	40, 75, 178
Alw21I	GWGCWC	1 cut(s)	42
Alw26I	GTCTC	1 cut(s)	288
AlwI	GGATC	3 cut(s)	40, 53, 120
Aor51HI	AGCGCT	1 cut(s)	255
AoxI	GGCC	1 cut(s)	156
AspLEI	GCGC	1 cut(s)	256
AspS9I	GGNCC	1 cut(s)	262
AsuHPI	GGTGA	1 cut(s)	70
AvaII	GGWCC	1 cut(s)	262
BamHI	GGATCC	1 cut(s)	45
BanII	GRGCYC	2 cut(s)	42, 187
BbsI	GAAGAC	1 cut(s)	54
Bbv12I	GWGCWC	1 cut(s)	42
BbvCI	CCTCAGC	1 cut(s)	174
BccI	CCATC	1 cut(s)	149
BciT130I	CCWGG	2 cut(s)	85, 260
BcoDI	GTCTC	1 cut(s)	288
BfoI	RGCGCY	1 cut(s)	257
BglII	AGATCT	1 cut(s)	243
Bme1390I	CCNGG	2 cut(s)	85, 260
Bme18I	GGWCC	1 cut(s)	262
BmgT120I	GGNCC	1 cut(s)	262
BmiI	GGNNCC	1 cut(s)	47
BmrFI	CCNGG	2 cut(s)	85, 260
BpiI	GAAGAC	1 cut(s)	54
BpmI	CTGGAG	1 cut(s)	242
Bpu10I	CCTNAGC	2 cut(s)	41, 174
BpuEI	CTTGAG	1 cut(s)	101
Bse1I	ACTGG	2 cut(s)	58, 159
BseBI	CCWGG	2 cut(s)	85, 260
BseMII	CTCAG	2 cut(s)	55, 188
BseNI	ACTGG	2 cut(s)	58, 159
Bsh1236I	CGCG	1 cut(s)	153
BshFI	GGCC	1 cut(s)	158
BsiHKAI	GWGCWC	1 cut(s)	42
BsiSI	CCGG	1 cut(s)	217
BsmAI	GTCTC	1 cut(s)	288
BsnI	GGCC	1 cut(s)	158
Bsp1286I	GDGCHC	2 cut(s)	42, 187
Bsp143I	GATC	3 cut(s)	45, 112, 243
Bsp68I	TCGCGA	1 cut(s)	153
BspANI	GGCC	1 cut(s)	158
BspCNI	CTCAG	2 cut(s)	54, 187
BspFNI	CGCG	1 cut(s)	153
BspLI	GGNNCC	1 cut(s)	47
BspPI	GGATC	3 cut(s)	40, 53, 120
BsrI	ACTGG	2 cut(s)	58, 159
BssMI	GATC	3 cut(s)	45, 112, 243
Bst2UI	CCWGG	2 cut(s)	85, 260
BstDEI	CTNAG	2 cut(s)	41, 174
BstFNI	CGCG	1 cut(s)	153
BstH2I	RGCGCY	1 cut(s)	257
BstHHI	GCGC	1 cut(s)	256
BstKTI	GATC	3 cut(s)	48, 115, 246
BstMAI	GTCTC	1 cut(s)	288
BstMBI	GATC	3 cut(s)	45, 112, 243
BstNI	CCWGG	2 cut(s)	85, 260
BstSCI	CCNGG	2 cut(s)	83, 258
BstUI	CGCG	1 cut(s)	153
BstV2I	GAAGAC	1 cut(s)	54
BstX2I	RGATCY	3 cut(s)	45, 112, 243
BstYI	RGATCY	3 cut(s)	45, 112, 243
BsuRI	GGCC	1 cut(s)	158
BtsIMutI	CAGTG	1 cut(s)	166
BtuMI	TCGCGA	1 cut(s)	153
CfoI	GCGC	1 cut(s)	256
Cfr13I	GGNCC	1 cut(s)	262
CviAII	CATG	1 cut(s)	6
CviJI	RGCY	8 cut(s)	40, 75, 158, 172, 178, 185, 220, 293
CviKI_1	RGCY	8 cut(s)	40, 75, 158, 172, 178, 185, 220, 293
DdeI	CTNAG	2 cut(s)	41, 174
DpnI	GATC	3 cut(s)	47, 114, 245
DpnII	GATC	3 cut(s)	45, 112, 243
Ecl136II	GAGCTC	1 cut(s)	40
Eco24I	GRGCYC	2 cut(s)	42, 187
Eco47I	GGWCC	1 cut(s)	262
Eco47III	AGCGCT	1 cut(s)	255
Eco53kI	GAGCTC	1 cut(s)	40
EcoICRI	GAGCTC	1 cut(s)	40
EcoO109I	RGGNCCY	1 cut(s)	262
EcoRII	CCWGG	2 cut(s)	83, 258
EcoT38I	GRGCYC	2 cut(s)	42, 187
FaeI	CATG	1 cut(s)	9
FaiI	YATR	2 cut(s)	7, 192
FatI	CATG	1 cut(s)	5
FriOI	GRGCYC	2 cut(s)	42, 187
GlaI	GCGC	1 cut(s)	255
GsuI	CTGGAG	1 cut(s)	242
HaeII	RGCGCY	1 cut(s)	257
HaeIII	GGCC	1 cut(s)	158
HapII	CCGG	1 cut(s)	217
HhaI	GCGC	1 cut(s)	256
Hin1II	CATG	1 cut(s)	9
Hin6I	GCGC	1 cut(s)	254
HinP1I	GCGC	1 cut(s)	254
HinfI	GANTC	2 cut(s)	148, 281
HpaII	CCGG	1 cut(s)	217
HphI	GGTGA	1 cut(s)	70
Hpy188I	TCNGA	2 cut(s)	27, 288
Hpy188III	TCNNGA	5 cut(s)	43, 118, 145, 152, 247
HpyAV	CCTTC	2 cut(s)	78, 218
HpyF3I	CTNAG	2 cut(s)	41, 174
Hsp92II	CATG	1 cut(s)	9
HspAI	GCGC	1 cut(s)	254
Kzo9I	GATC	3 cut(s)	45, 112, 243
LmnI	GCTCC	2 cut(s)	37, 261
MalI	GATC	3 cut(s)	47, 114, 245
MboI	GATC	3 cut(s)	45, 112, 243
MboII	GAAGA	1 cut(s)	54
MflI	RGATCY	3 cut(s)	45, 112, 243
MhlI	GDGCHC	2 cut(s)	42, 187
MluCI	AATT	2 cut(s)	103, 134
MlyI	GAGTC	1 cut(s)	290
MnlI	CCTC	4 cut(s)	3, 148, 183, 201
MseI	TTAA	1 cut(s)	32
MspI	CCGG	1 cut(s)	217
MspR9I	CCNGG	2 cut(s)	85, 260
MvaI	CCWGG	2 cut(s)	85, 260
MvnI	CGCG	1 cut(s)	153
NdeII	GATC	3 cut(s)	45, 112, 243
NlaIII	CATG	1 cut(s)	9
NlaIV	GGNNCC	1 cut(s)	47
NruI	TCGCGA	1 cut(s)	153
PfeI	GAWTC	1 cut(s)	148
PflFI	GACNNNGTC	1 cut(s)	266
PfoI	TCCNGGA	1 cut(s)	258
PleI	GAGTC	1 cut(s)	289
PpsI	GAGTC	1 cut(s)	289
PpuMI	RGGWCCY	1 cut(s)	262
Psp124BI	GAGCTC	1 cut(s)	42
Psp5II	RGGWCCY	1 cut(s)	262
Psp6I	CCWGG	2 cut(s)	83, 258
PspGI	CCWGG	2 cut(s)	83, 258
PspN4I	GGNNCC	1 cut(s)	47
PspPI	GGNCC	1 cut(s)	262
PspPPI	RGGWCCY	1 cut(s)	262
PsuI	RGATCY	3 cut(s)	45, 112, 243
PsyI	GACNNNGTC	1 cut(s)	266
RruI	TCGCGA	1 cut(s)	153
SacI	GAGCTC	1 cut(s)	42
SaqAI	TTAA	1 cut(s)	32
Sau3AI	GATC	3 cut(s)	45, 112, 243
Sau96I	GGNCC	1 cut(s)	262
SchI	GAGTC	1 cut(s)	290
ScrFI	CCNGG	2 cut(s)	85, 260
SduI	GDGCHC	2 cut(s)	42, 187
SetI	ASST	5 cut(s)	42, 77, 180, 229, 267
SinI	GGWCC	1 cut(s)	262
SmlI	CTYRAG	1 cut(s)	116
SmoI	CTYRAG	1 cut(s)	116
Sse9I	AATT	2 cut(s)	103, 134
SstI	GAGCTC	1 cut(s)	42
StyD4I	CCNGG	2 cut(s)	83, 258
TaqI	TCGA	1 cut(s)	248
TasI	AATT	2 cut(s)	103, 134
TfiI	GAWTC	1 cut(s)	148
Tru1I	TTAA	1 cut(s)	32
Tru9I	TTAA	1 cut(s)	32
TscAI	CASTG	1 cut(s)	166
TspRI	CASTG	1 cut(s)	166
Tth111I	GACNNNGTC	1 cut(s)	266
VpaK11BI	GGWCC	1 cut(s)	262
XcmI	CCANNNNNNNNNTGG	1 cut(s)	91

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.