Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000271.1

Orthogroup ID

OG0009186

Physical Location & Seq

Genomic Coordinates Reverse (-)

60972 .. 61999

Gene Structure 1028 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000271.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

atggcatggataggaaatctatcggaactaagctccttaggatcctactttgctagttatctctttcaagcgtcaccacccagaacatttgtggagaagaattacaaggatctcaagagttttgaccccaaattgcccgtcttgattcgcgagagcagtaggattgagcctcagctatgggctagatatgacttggataagatgattatttgggtagaggctatagcgaaacctgcggttgaagatgaggaggatgggtggggtacatggatcaccggcctcatcatcctcgccgtcgatttcctctccgagacctccatcgaggccttcatcatcaagatcttccggtccctcaacaaaacagcgttcgtccgcgcattttcagataagccccatgccatggtcttcgggtttgcgaagacggagaggaccatgaagtatttatatatgaggagattgcatctgtggcctaggtttcatgtgaaggtttcaaatgagttggatagggacgtgctggaggtggtggatattaggttccgatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000014 GO:0000109 GO:0000110 GO:0000280 GO:0000712 GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003697 GO:0003824 GO:0004518 GO:0004519 GO:0004520 GO:0004536 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006296 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006979 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007131 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0016043 GO:0016787 GO:0016788 GO:0022402 GO:0022414 GO:0032991 GO:0033554 GO:0033683 GO:0034641 GO:0035825 GO:0036297 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045132 GO:0046483 GO:0048285 GO:0050896 GO:0051304 GO:0051307 GO:0051321 GO:0051716 GO:0061982 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0098813 GO:0140013 GO:0140097 GO:1901255 GO:1901360 GO:1901363 GO:1903046 GO:1990391

KEGG Pathways

Metabolic & Signaling

ko03420 ko03460 map03420 map03460

Pfam Domains

Protein Families

ERCC4 Pro_isomerase

Protein Analysis

180

Amino Acids

21.1

Weight (kDa)

7.92

Isoelectric Point (pI)

41.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009186)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47890
fragaria_vesca	FvH4_3g23621
malus_domestica	MD03G1192500.v1.1 MD11G1209000.v1.1
prunus_persica	Prupe.4G224700_v2.0.a1 Prupe.4G224700_v2.0.a1 Prupe.4G224700_v2.0.a1
pyrus_communis	pycom11g18390
rosa_chinensis	RchiOBHm_Chr5g0041661
rosa_laevigata	RLG00000033678
rosa_multiflora	Rmu_sc0000271.1_g000013 Rmu_sc0000706.1_g000019 Rmu_sc0000861.1_g000016 Rmu_sc0004455.1_g000011 Rmu_sc0011648.1_g000010
rosa_roxburghii	Rroxscaffold_1G00038840
rosa_rugosa	Rorug05G0194500
rosa_samantha	Rh5BG285300 Rh5CG317300 Rh5DG294100
rosa_wichuraiana	Rw0G011090 Rw5G026350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	241
AccB7I	CCANNNNNTGG	1 cut(s)	400
AccII	CGCG	2 cut(s)	150, 375
AciI	CCGC	2 cut(s)	236, 373
AclWI	GGATC	4 cut(s)	36, 49, 117, 278
AfaI	GTAC	1 cut(s)	265
AfiI	CCNNNNNNNGG	1 cut(s)	400
AgsI	TTSAA	3 cut(s)	68, 242, 492
AjiI	CACGTC	1 cut(s)	511
AloI	GAACNNNNNNTCC	1 cut(s)	518
AluBI	AGCT	2 cut(s)	33, 175
AluI	AGCT	2 cut(s)	33, 175
Alw26I	GTCTC	1 cut(s)	305
AlwI	GGATC	4 cut(s)	36, 49, 117, 278
AoxI	GGCC	3 cut(s)	277, 324, 467
ArsI	GACNNNNNNTTYG	2 cut(s)	123, 155
AspA2I	CCTAGG	1 cut(s)	470
AspLEI	GCGC	1 cut(s)	377
AspS9I	GGNCC	2 cut(s)	348, 429
AsuHPI	GGTGA	2 cut(s)	66, 265
AvaII	GGWCC	2 cut(s)	348, 429
AvrII	CCTAGG	1 cut(s)	470
AxyI	CCTNAGG	1 cut(s)	37
BamHI	GGATCC	1 cut(s)	41
BbsI	GAAGAC	2 cut(s)	397, 425
BbvCI	CCTCAGC	1 cut(s)	171
BccI	CCATC	2 cut(s)	248, 326
BceAI	ACGGC	1 cut(s)	278
BcoDI	GTCTC	1 cut(s)	305
BfaI	CTAG	3 cut(s)	54, 183, 471
BfmI	CTRYAG	1 cut(s)	222
BfuAI	ACCTGC	1 cut(s)	241
BglII	AGATCT	1 cut(s)	339
BlnI	CCTAGG	1 cut(s)	470
Bme18I	GGWCC	2 cut(s)	348, 429
BmgBI	CACGTC	1 cut(s)	511
BmgT120I	GGNCC	2 cut(s)	348, 429
BmiI	GGNNCC	3 cut(s)	43, 350, 536
BmsI	GCATC	1 cut(s)	469
BpiI	GAAGAC	2 cut(s)	397, 425
BpmI	CTGGAG	1 cut(s)	536
Bpu10I	CCTNAGC	1 cut(s)	171
BpuEI	CTTGAG	1 cut(s)	98
BsaI	GGTCTC	1 cut(s)	305
BsaJI	CCNNGG	2 cut(s)	399, 470
BsaWI	WCCGGW	1 cut(s)	345
BsaXI	ACNNNNNCTCC	2 cut(s)	242, 272
Bsc4I	CCNNNNNNNGG	1 cut(s)	400
Bse118I	RCCGGY	1 cut(s)	275
Bse21I	CCTNAGG	1 cut(s)	37
BseDI	CCNNGG	2 cut(s)	399, 470
BseGI	GGATG	2 cut(s)	259, 285
BseLI	CCNNNNNNNGG	1 cut(s)	400
BseMII	CTCAG	1 cut(s)	185
BseRI	GAGGAG	2 cut(s)	263, 466
Bsh1236I	CGCG	2 cut(s)	150, 375
BshFI	GGCC	3 cut(s)	279, 326, 469
BsiSI	CCGG	2 cut(s)	276, 346
BslFI	GGGAC	2 cut(s)	334, 521
BslI	CCNNNNNNNGG	1 cut(s)	400
BsmAI	GTCTC	1 cut(s)	305
BsmFI	GGGAC	2 cut(s)	334, 521
BsnI	GGCC	3 cut(s)	279, 326, 469
Bso31I	GGTCTC	1 cut(s)	305
Bsp143I	GATC	4 cut(s)	41, 109, 270, 339
Bsp19I	CCATGG	1 cut(s)	399
Bsp68I	TCGCGA	1 cut(s)	150
BspACI	CCGC	2 cut(s)	236, 373
BspANI	GGCC	3 cut(s)	279, 326, 469
BspCNI	CTCAG	1 cut(s)	184
BspFNI	CGCG	2 cut(s)	150, 375
BspLI	GGNNCC	3 cut(s)	43, 350, 536
BspMI	ACCTGC	1 cut(s)	241
BspPI	GGATC	4 cut(s)	36, 49, 117, 278
BspTNI	GGTCTC	1 cut(s)	305
BsrFI	RCCGGY	1 cut(s)	275
BssAI	RCCGGY	1 cut(s)	275
BssECI	CCNNGG	2 cut(s)	399, 470
BssMI	GATC	4 cut(s)	41, 109, 270, 339
BssT1I	CCWWGG	2 cut(s)	399, 470
BstDEI	CTNAG	3 cut(s)	29, 37, 171
BstDSI	CCRYGG	1 cut(s)	399
BstF5I	GGATG	2 cut(s)	259, 285
BstFNI	CGCG	2 cut(s)	150, 375
BstHHI	GCGC	1 cut(s)	377
BstKTI	GATC	4 cut(s)	44, 112, 273, 342
BstMAI	GTCTC	1 cut(s)	305
BstMBI	GATC	4 cut(s)	41, 109, 270, 339
BstMWI	GCNNNNNNNGC	2 cut(s)	233, 466
BstSFI	CTRYAG	1 cut(s)	222
BstUI	CGCG	2 cut(s)	150, 375
BstV2I	GAAGAC	2 cut(s)	397, 425
BstX2I	RGATCY	3 cut(s)	41, 109, 339
BstYI	RGATCY	3 cut(s)	41, 109, 339
Bsu36I	CCTNAGG	1 cut(s)	37
BsuRI	GGCC	3 cut(s)	279, 326, 469
BtgI	CCRYGG	1 cut(s)	399
BtrI	CACGTC	1 cut(s)	511
BtsCI	GGATG	2 cut(s)	259, 285
BtuMI	TCGCGA	1 cut(s)	150
BveI	ACCTGC	1 cut(s)	241
CfoI	GCGC	1 cut(s)	377
Cfr10I	RCCGGY	1 cut(s)	275
Cfr13I	GGNCC	2 cut(s)	348, 429
CseI	GACGC	1 cut(s)	60
Csp6I	GTAC	1 cut(s)	264
CviAII	CATG	6 cut(s)	6, 267, 395, 400, 433, 479
CviJI	RGCY	9 cut(s)	33, 169, 175, 182, 221, 279, 326, 391, 469
CviKI_1	RGCY	9 cut(s)	33, 169, 175, 182, 221, 279, 326, 391, 469
CviQI	GTAC	1 cut(s)	264
DdeI	CTNAG	3 cut(s)	29, 37, 171
DpnI	GATC	4 cut(s)	43, 111, 272, 341
DpnII	GATC	4 cut(s)	41, 109, 270, 339
Eco130I	CCWWGG	2 cut(s)	399, 470
Eco147I	AGGCCT	1 cut(s)	326
Eco31I	GGTCTC	1 cut(s)	305
Eco47I	GGWCC	2 cut(s)	348, 429
Eco81I	CCTNAGG	1 cut(s)	37
EcoT14I	CCWWGG	2 cut(s)	399, 470
ErhI	CCWWGG	2 cut(s)	399, 470
FaeI	CATG	6 cut(s)	9, 270, 398, 403, 436, 482
FaqI	GGGAC	2 cut(s)	334, 521
FatI	CATG	6 cut(s)	5, 266, 394, 399, 432, 478
FokI	GGATG	2 cut(s)	266, 272
FspBI	CTAG	3 cut(s)	54, 183, 471
GlaI	GCGC	1 cut(s)	376
GsuI	CTGGAG	1 cut(s)	536
HaeIII	GGCC	3 cut(s)	279, 326, 469
HapII	CCGG	2 cut(s)	276, 346
HgaI	GACGC	1 cut(s)	60
HhaI	GCGC	1 cut(s)	377
Hin1II	CATG	6 cut(s)	9, 270, 398, 403, 436, 482
Hin6I	GCGC	1 cut(s)	375
HinP1I	GCGC	1 cut(s)	375
HinfI	GANTC	1 cut(s)	145
HpaII	CCGG	2 cut(s)	276, 346
HphI	GGTGA	2 cut(s)	66, 265
Hpy188I	TCNGA	4 cut(s)	25, 310, 385, 539
Hpy188III	TCNNGA	4 cut(s)	115, 142, 149, 337
Hpy99I	CGWCG	1 cut(s)	299
HpyAV	CCTTC	2 cut(s)	337, 478
HpyCH4IV	ACGT	1 cut(s)	510
HpyCH4V	TGCA	1 cut(s)	460
HpyF10VI	GCNNNNNNNGC	2 cut(s)	233, 466
HpyF3I	CTNAG	3 cut(s)	29, 37, 171
HpySE526I	ACGT	1 cut(s)	510
Hsp92II	CATG	6 cut(s)	9, 270, 398, 403, 436, 482
HspAI	GCGC	1 cut(s)	375
Kzo9I	GATC	4 cut(s)	41, 109, 270, 339
LmnI	GCTCC	1 cut(s)	38
LpnPI	CCDG	5 cut(s)	94, 246, 289, 359, 500
LweI	GCATC	1 cut(s)	469
MaeI	CTAG	3 cut(s)	54, 183, 471
MaeII	ACGT	1 cut(s)	510
MaeIII	GTNAC	1 cut(s)	72
MalI	GATC	4 cut(s)	43, 111, 272, 341
MboI	GATC	4 cut(s)	41, 109, 270, 339
MboII	GAAGA	5 cut(s)	109, 254, 334, 397, 430
MflI	RGATCY	3 cut(s)	41, 109, 339
MluCI	AATT	2 cut(s)	100, 131
MmeI	TCCRAC	1 cut(s)	480
MspI	CCGG	2 cut(s)	276, 346
MvnI	CGCG	2 cut(s)	150, 375
MwoI	GCNNNNNNNGC	2 cut(s)	233, 466
NcoI	CCATGG	1 cut(s)	399
NdeII	GATC	4 cut(s)	41, 109, 270, 339
NlaIII	CATG	6 cut(s)	9, 270, 398, 403, 436, 482
NlaIV	GGNNCC	3 cut(s)	43, 350, 536
NmuCI	GTSAC	1 cut(s)	72
NruI	TCGCGA	1 cut(s)	150
PceI	AGGCCT	1 cut(s)	326
PfeI	GAWTC	1 cut(s)	145
PflMI	CCANNNNNTGG	1 cut(s)	400
PspN4I	GGNNCC	3 cut(s)	43, 350, 536
PspPI	GGNCC	2 cut(s)	348, 429
PsuI	RGATCY	3 cut(s)	41, 109, 339
RruI	TCGCGA	1 cut(s)	150
RsaI	GTAC	1 cut(s)	265
RsaNI	GTAC	1 cut(s)	264
Sau3AI	GATC	4 cut(s)	41, 109, 270, 339
Sau96I	GGNCC	2 cut(s)	348, 429
SetI	ASST	9 cut(s)	35, 177, 235, 317, 476, 489, 513, 522, 536
SfaNI	GCATC	1 cut(s)	469
SfcI	CTRYAG	1 cut(s)	222
SinI	GGWCC	2 cut(s)	348, 429
SmlI	CTYRAG	1 cut(s)	113
SmoI	CTYRAG	1 cut(s)	113
Sse9I	AATT	2 cut(s)	100, 131
SseBI	AGGCCT	1 cut(s)	326
SsiI	CCGC	2 cut(s)	236, 373
SspMI	CTAG	3 cut(s)	54, 183, 471
StuI	AGGCCT	1 cut(s)	326
StyI	CCWWGG	2 cut(s)	399, 470
TaiI	ACGT	1 cut(s)	513
TaqI	TCGA	2 cut(s)	297, 321
TasI	AATT	2 cut(s)	100, 131
TfiI	GAWTC	1 cut(s)	145
TseFI	GTSAC	1 cut(s)	72
Tsp45I	GTSAC	1 cut(s)	72
TspDTI	ATGAA	3 cut(s)	319, 449, 467
TspGWI	ACGGA	1 cut(s)	437
Van91I	CCANNNNNTGG	1 cut(s)	400
VpaK11BI	GGWCC	2 cut(s)	348, 429
XcmI	CCANNNNNNNNNTGG	1 cut(s)	88
XmaJI	CCTAGG	1 cut(s)	470
XspI	CTAG	3 cut(s)	54, 183, 471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.