Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0009186

Physical Location & Seq

Genomic Coordinates Forward (+)

30705928 .. 30706747

Gene Structure 820 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033678

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGGCATGGAGAGGAAATCTAGCGGAACTAAGCTCCTTAGGATCCTACTCTGCTAGTTATCTCTTTCAAGCGTCACCACCCAGAACATTTGTGGAGAAGAATTACAAGGATCTCAAGAGTTTTGACCCCAAATTGCCCGTCTTGATTCGCGAGAGCACCCCCATCACTTCCACCTTCACGACGGCCACCACCACTTCCGACGGAGCAATGAAACCCGATCAACACGAGCGAGAAATAACCGTAGAAAAGATAAAGACTCAACTTGAGGAAGAGAGTGAGAAACAGAGACAGGAAATTGGTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003954 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0008137 GO:0008150 GO:0008152 GO:0016020 GO:0016491 GO:0016651 GO:0016655 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0050136 GO:0055114 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

L51_S25_CI-B8

Protein Analysis

102

Amino Acids

11.43

Weight (kDa)

5.42

Isoelectric Point (pI)

39.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009186)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47890
fragaria_vesca	FvH4_3g23621
malus_domestica	MD03G1192500.v1.1 MD11G1209000.v1.1
prunus_persica	Prupe.4G224700_v2.0.a1 Prupe.4G224700_v2.0.a1 Prupe.4G224700_v2.0.a1
pyrus_communis	pycom11g18390
rosa_chinensis	RchiOBHm_Chr5g0041661
rosa_laevigata	RLG00000033678
rosa_multiflora	Rmu_sc0000271.1_g000013 Rmu_sc0000706.1_g000019 Rmu_sc0000861.1_g000016 Rmu_sc0004455.1_g000011 Rmu_sc0011648.1_g000010
rosa_roxburghii	Rroxscaffold_1G00038840
rosa_rugosa	Rorug05G0194500
rosa_samantha	Rh5BG285300 Rh5CG317300 Rh5DG294100
rosa_wichuraiana	Rw0G011090 Rw5G026350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	150
AciI	CCGC	1 cut(s)	23
AclWI	GGATC	3 cut(s)	36, 49, 117
AcoI	YGGCCR	1 cut(s)	183
AgsI	TTSAA	1 cut(s)	68
AluBI	AGCT	1 cut(s)	33
AluI	AGCT	1 cut(s)	33
Alw21I	GWGCWC	1 cut(s)	158
Alw26I	GTCTC	1 cut(s)	280
AlwI	GGATC	3 cut(s)	36, 49, 117
AoxI	GGCC	1 cut(s)	183
ArsI	GACNNNNNNTTYG	2 cut(s)	123, 155
AsuHPI	GGTGA	1 cut(s)	66
AxyI	CCTNAGG	1 cut(s)	37
BamHI	GGATCC	1 cut(s)	41
BauI	CACGAG	1 cut(s)	224
Bbv12I	GWGCWC	1 cut(s)	158
BccI	CCATC	1 cut(s)	170
BceAI	ACGGC	1 cut(s)	198
BcoDI	GTCTC	1 cut(s)	280
BfaI	CTAG	2 cut(s)	20, 54
BmiI	GGNNCC	1 cut(s)	43
BpuEI	CTTGAG	2 cut(s)	98, 284
Bse21I	CCTNAGG	1 cut(s)	37
Bse3DI	GCAATG	1 cut(s)	213
BseMI	GCAATG	1 cut(s)	213
Bsh1236I	CGCG	1 cut(s)	150
BshFI	GGCC	1 cut(s)	185
BsiHKAI	GWGCWC	1 cut(s)	158
BsmAI	GTCTC	1 cut(s)	280
BsnI	GGCC	1 cut(s)	185
Bsp1286I	GDGCHC	1 cut(s)	158
Bsp143I	GATC	3 cut(s)	41, 109, 217
Bsp68I	TCGCGA	1 cut(s)	150
BspACI	CCGC	1 cut(s)	23
BspANI	GGCC	1 cut(s)	185
BspFNI	CGCG	1 cut(s)	150
BspLI	GGNNCC	1 cut(s)	43
BspPI	GGATC	3 cut(s)	36, 49, 117
BsrDI	GCAATG	1 cut(s)	213
BssMI	GATC	3 cut(s)	41, 109, 217
BssSI	CACGAG	1 cut(s)	224
Bst2BI	CACGAG	1 cut(s)	224
Bst4CI	ACNGT	1 cut(s)	241
Bst6I	CTCTTC	1 cut(s)	264
BstDEI	CTNAG	2 cut(s)	29, 37
BstFNI	CGCG	1 cut(s)	150
BstKTI	GATC	3 cut(s)	44, 112, 220
BstMAI	GTCTC	1 cut(s)	280
BstMBI	GATC	3 cut(s)	41, 109, 217
BstUI	CGCG	1 cut(s)	150
BstX2I	RGATCY	2 cut(s)	41, 109
BstYI	RGATCY	2 cut(s)	41, 109
Bsu36I	CCTNAGG	1 cut(s)	37
BsuRI	GGCC	1 cut(s)	185
BtuMI	TCGCGA	1 cut(s)	150
CseI	GACGC	1 cut(s)	60
CviAII	CATG	1 cut(s)	6
CviJI	RGCY	2 cut(s)	33, 185
CviKI_1	RGCY	2 cut(s)	33, 185
DdeI	CTNAG	2 cut(s)	29, 37
DpnI	GATC	3 cut(s)	43, 111, 219
DpnII	GATC	3 cut(s)	41, 109, 217
EaeI	YGGCCR	1 cut(s)	183
Eam1104I	CTCTTC	1 cut(s)	264
EarI	CTCTTC	1 cut(s)	264
Eco81I	CCTNAGG	1 cut(s)	37
FaeI	CATG	1 cut(s)	9
FaiI	YATR	1 cut(s)	7
FatI	CATG	1 cut(s)	5
FspBI	CTAG	2 cut(s)	20, 54
HaeIII	GGCC	1 cut(s)	185
HgaI	GACGC	1 cut(s)	60
Hin1II	CATG	1 cut(s)	9
HinfI	GANTC	2 cut(s)	145, 256
HphI	GGTGA	1 cut(s)	66
Hpy188I	TCNGA	1 cut(s)	199
Hpy188III	TCNNGA	4 cut(s)	115, 142, 149, 178
Hpy99I	CGWCG	2 cut(s)	184, 203
HpyAV	CCTTC	1 cut(s)	184
HpyCH4III	ACNGT	1 cut(s)	241
HpyF3I	CTNAG	2 cut(s)	29, 37
Hsp92II	CATG	1 cut(s)	9
Kzo9I	GATC	3 cut(s)	41, 109, 217
LmnI	GCTCC	2 cut(s)	38, 203
LpnPI	CCDG	2 cut(s)	94, 275
MaeI	CTAG	2 cut(s)	20, 54
MaeIII	GTNAC	1 cut(s)	72
MalI	GATC	3 cut(s)	43, 111, 219
MboI	GATC	3 cut(s)	41, 109, 217
MboII	GAAGA	2 cut(s)	109, 281
MflI	RGATCY	2 cut(s)	41, 109
MhlI	GDGCHC	1 cut(s)	158
MluCI	AATT	3 cut(s)	100, 131, 294
MlyI	GAGTC	1 cut(s)	250
MmeI	TCCRAC	1 cut(s)	222
MnlI	CCTC	2 cut(s)	5, 259
MvnI	CGCG	1 cut(s)	150
NdeII	GATC	3 cut(s)	41, 109, 217
NlaIII	CATG	1 cut(s)	9
NlaIV	GGNNCC	1 cut(s)	43
NmuCI	GTSAC	1 cut(s)	72
NruI	TCGCGA	1 cut(s)	150
PfeI	GAWTC	1 cut(s)	145
PleI	GAGTC	1 cut(s)	250
PpsI	GAGTC	1 cut(s)	250
PspN4I	GGNNCC	1 cut(s)	43
PsuI	RGATCY	2 cut(s)	41, 109
RruI	TCGCGA	1 cut(s)	150
Sau3AI	GATC	3 cut(s)	41, 109, 217
SchI	GAGTC	1 cut(s)	250
SduI	GDGCHC	1 cut(s)	158
SetI	ASST	2 cut(s)	35, 176
SmlI	CTYRAG	2 cut(s)	113, 263
SmoI	CTYRAG	2 cut(s)	113, 263
Sse9I	AATT	3 cut(s)	100, 131, 294
SsiI	CCGC	1 cut(s)	23
SspMI	CTAG	2 cut(s)	20, 54
TaaI	ACNGT	1 cut(s)	241
TasI	AATT	3 cut(s)	100, 131, 294
TfiI	GAWTC	1 cut(s)	145
TseFI	GTSAC	1 cut(s)	72
Tsp45I	GTSAC	1 cut(s)	72
TspDTI	ATGAA	1 cut(s)	224
TspGWI	ACGGA	1 cut(s)	216
XcmI	CCANNNNNNNNNTGG	1 cut(s)	88
XspI	CTAG	2 cut(s)	20, 54

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.