Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0009186

Physical Location & Seq

Genomic Coordinates Forward (+)

37128152 .. 37131097

Gene Structure 2946 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG294100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGGCATGGAGGGGAAGTCTATCTCGGAACTTAAAGGAGCTTAGGATCCTACTCTGCCAGTCATCTCCTTCAAGCGCCACCACCAGAACATTTGTGGAGAAGAATTACAAGGATCTCAAGAGTTTGAACCCCAAATTGCCCATCTTGATTCGCGAGAGCAGTGGGATTGAGCCTCAGCTATGGGCTAGATATGGTATTTATTCCCACTCTTCCCTCACTTTTTTCTTCTTCTTCTGGGTTTTTCAATCTTTTTTCTTTGTTAACATTTCTCAATGCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003954 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0006091 GO:0006119 GO:0006120 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007005 GO:0008137 GO:0008150 GO:0008152 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009987 GO:0010257 GO:0015980 GO:0016020 GO:0016043 GO:0016310 GO:0016491 GO:0016651 GO:0016655 GO:0017144 GO:0019637 GO:0019693 GO:0019866 GO:0022607 GO:0022900 GO:0022904 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032981 GO:0032991 GO:0033108 GO:0034622 GO:0034641 GO:0042773 GO:0042775 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0045333 GO:0046034 GO:0046483 GO:0050136 GO:0055086 GO:0055114 GO:0065003 GO:0070469 GO:0071704 GO:0071840 GO:0072521 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1901135 GO:1901360 GO:1901564 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

L51_S25_CI-B8

Protein Analysis

93

Amino Acids

10.96

Weight (kDa)

9.83

Isoelectric Point (pI)

58.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
L51_S25_CI-B8	PF05047	28 - 65	1.1e-12	Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0009186)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47890
fragaria_vesca	FvH4_3g23621
malus_domestica	MD03G1192500.v1.1 MD11G1209000.v1.1
prunus_persica	Prupe.4G224700_v2.0.a1 Prupe.4G224700_v2.0.a1 Prupe.4G224700_v2.0.a1
pyrus_communis	pycom11g18390
rosa_chinensis	RchiOBHm_Chr5g0041661
rosa_laevigata	RLG00000033678
rosa_multiflora	Rmu_sc0000271.1_g000013 Rmu_sc0000706.1_g000019 Rmu_sc0000861.1_g000016 Rmu_sc0004455.1_g000011 Rmu_sc0011648.1_g000010
rosa_roxburghii	Rroxscaffold_1G00038840
rosa_rugosa	Rorug05G0194500
rosa_samantha	Rh5BG285300 Rh5CG317300 Rh5DG294100
rosa_wichuraiana	Rw0G011090 Rw5G026350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	153
AclWI	GGATC	3 cut(s)	40, 53, 120
AgsI	TTSAA	3 cut(s)	72, 127, 245
AluBI	AGCT	2 cut(s)	40, 178
AluI	AGCT	2 cut(s)	40, 178
AlwI	GGATC	3 cut(s)	40, 53, 120
AspLEI	GCGC	1 cut(s)	77
BamHI	GGATCC	1 cut(s)	45
BbvCI	CCTCAGC	1 cut(s)	174
BccI	CCATC	1 cut(s)	149
BfaI	CTAG	1 cut(s)	186
BfoI	RGCGCY	1 cut(s)	78
BmiI	GGNNCC	1 cut(s)	47
Bpu10I	CCTNAGC	2 cut(s)	41, 174
BpuEI	CTTGAG	1 cut(s)	101
BsaXI	ACNNNNNCTCC	1 cut(s)	31
Bse1I	ACTGG	1 cut(s)	58
BseMII	CTCAG	1 cut(s)	188
BseNI	ACTGG	1 cut(s)	58
Bsh1236I	CGCG	1 cut(s)	153
Bsp143I	GATC	2 cut(s)	45, 112
Bsp68I	TCGCGA	1 cut(s)	153
BspCNI	CTCAG	1 cut(s)	187
BspFNI	CGCG	1 cut(s)	153
BspLI	GGNNCC	1 cut(s)	47
BspPI	GGATC	3 cut(s)	40, 53, 120
BsrI	ACTGG	1 cut(s)	58
BssMI	GATC	2 cut(s)	45, 112
Bst6I	CTCTTC	1 cut(s)	214
BstDEI	CTNAG	2 cut(s)	41, 174
BstFNI	CGCG	1 cut(s)	153
BstH2I	RGCGCY	1 cut(s)	78
BstHHI	GCGC	1 cut(s)	77
BstKTI	GATC	2 cut(s)	48, 115
BstMBI	GATC	2 cut(s)	45, 112
BstUI	CGCG	1 cut(s)	153
BstX2I	RGATCY	2 cut(s)	45, 112
BstYI	RGATCY	2 cut(s)	45, 112
BtsI	GCAGTG	1 cut(s)	166
BtsIMutI	CAGTG	1 cut(s)	166
BtuMI	TCGCGA	1 cut(s)	153
CfoI	GCGC	1 cut(s)	77
CviAII	CATG	1 cut(s)	6
CviJI	RGCY	4 cut(s)	40, 172, 178, 185
CviKI_1	RGCY	4 cut(s)	40, 172, 178, 185
DdeI	CTNAG	2 cut(s)	41, 174
DpnI	GATC	2 cut(s)	47, 114
DpnII	GATC	2 cut(s)	45, 112
Eam1104I	CTCTTC	1 cut(s)	214
EarI	CTCTTC	1 cut(s)	214
FaeI	CATG	1 cut(s)	9
FaiI	YATR	3 cut(s)	7, 181, 192
FatI	CATG	1 cut(s)	5
FspBI	CTAG	1 cut(s)	186
GlaI	GCGC	1 cut(s)	76
HaeII	RGCGCY	1 cut(s)	78
HhaI	GCGC	1 cut(s)	77
Hin1II	CATG	1 cut(s)	9
Hin6I	GCGC	1 cut(s)	75
HinP1I	GCGC	1 cut(s)	75
HincII	GTYRAC	1 cut(s)	262
HindII	GTYRAC	1 cut(s)	262
HinfI	GANTC	1 cut(s)	148
HpaI	GTTAAC	1 cut(s)	262
Hpy166II	GTNNAC	1 cut(s)	262
Hpy188I	TCNGA	1 cut(s)	27
Hpy188III	TCNNGA	3 cut(s)	118, 145, 152
Hpy8I	GTNNAC	1 cut(s)	262
HpyAV	CCTTC	1 cut(s)	78
HpyF3I	CTNAG	2 cut(s)	41, 174
Hsp92II	CATG	1 cut(s)	9
HspAI	GCGC	1 cut(s)	75
KspAI	GTTAAC	1 cut(s)	262
Kzo9I	GATC	2 cut(s)	45, 112
LmnI	GCTCC	1 cut(s)	37
LpnPI	CCDG	3 cut(s)	71, 97, 220
MaeI	CTAG	1 cut(s)	186
MalI	GATC	2 cut(s)	47, 114
MboI	GATC	2 cut(s)	45, 112
MboII	GAAGA	5 cut(s)	112, 201, 217, 220, 223
MflI	RGATCY	2 cut(s)	45, 112
MluCI	AATT	2 cut(s)	103, 134
MnlI	CCTC	3 cut(s)	3, 183, 224
MseI	TTAA	2 cut(s)	32, 261
MvnI	CGCG	1 cut(s)	153
NdeII	GATC	2 cut(s)	45, 112
NlaIII	CATG	1 cut(s)	9
NlaIV	GGNNCC	1 cut(s)	47
NruI	TCGCGA	1 cut(s)	153
PfeI	GAWTC	1 cut(s)	148
PspN4I	GGNNCC	1 cut(s)	47
PsuI	RGATCY	2 cut(s)	45, 112
RruI	TCGCGA	1 cut(s)	153
SaqAI	TTAA	2 cut(s)	32, 261
Sau3AI	GATC	2 cut(s)	45, 112
SetI	ASST	2 cut(s)	42, 180
SmlI	CTYRAG	1 cut(s)	116
SmoI	CTYRAG	1 cut(s)	116
Sse9I	AATT	2 cut(s)	103, 134
SspMI	CTAG	1 cut(s)	186
TasI	AATT	2 cut(s)	103, 134
TfiI	GAWTC	1 cut(s)	148
Tru1I	TTAA	2 cut(s)	32, 261
Tru9I	TTAA	2 cut(s)	32, 261
TscAI	CASTG	1 cut(s)	166
TspRI	CASTG	1 cut(s)	166
XcmI	CCANNNNNNNNNTGG	1 cut(s)	91
XspI	CTAG	1 cut(s)	186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.