NADH dehydrogenase ubiquinone 1 alpha subcomplex subunit
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G47890 |
| fragaria_vesca | FvH4_3g23621 |
| malus_domestica | MD03G1192500.v1.1 MD11G1209000.v1.1 |
| prunus_persica | Prupe.4G224700_v2.0.a1 Prupe.4G224700_v2.0.a1 Prupe.4G224700_v2.0.a1 |
| pyrus_communis | pycom11g18390 |
| rosa_chinensis | RchiOBHm_Chr5g0041661 |
| rosa_laevigata | RLG00000033678 |
| rosa_multiflora | Rmu_sc0000271.1_g000013 Rmu_sc0000706.1_g000019 Rmu_sc0000861.1_g000016 Rmu_sc0004455.1_g000011 Rmu_sc0011648.1_g000010 |
| rosa_roxburghii | Rroxscaffold_1G00038840 |
| rosa_rugosa | Rorug05G0194500 |
| rosa_samantha | Rh5BG285300 Rh5CG317300 Rh5DG294100 |
| rosa_wichuraiana | Rw0G011090 Rw5G026350 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 120 |
| AgsI | TTSAA | 2 cut(s) | 72, 127 |
| AluBI | AGCT | 2 cut(s) | 19, 40 |
| AluI | AGCT | 2 cut(s) | 19, 40 |
| Alw26I | GTCTC | 1 cut(s) | 288 |
| AlwI | GGATC | 1 cut(s) | 120 |
| Ama87I | CYCGRG | 1 cut(s) | 257 |
| AspLEI | GCGC | 1 cut(s) | 77 |
| AvaI | CYCGRG | 1 cut(s) | 257 |
| BcoDI | GTCTC | 1 cut(s) | 288 |
| BfaI | CTAG | 1 cut(s) | 186 |
| BglII | AGATCT | 1 cut(s) | 243 |
| BmeT110I | CYCGRG | 1 cut(s) | 257 |
| Bpu10I | CCTNAGC | 1 cut(s) | 41 |
| BpuEI | CTTGAG | 1 cut(s) | 101 |
| BseMII | CTCAG | 2 cut(s) | 38, 188 |
| BsiHKCI | CYCGRG | 1 cut(s) | 257 |
| BsmAI | GTCTC | 1 cut(s) | 288 |
| BsmI | GAATGC | 1 cut(s) | 161 |
| BsoBI | CYCGRG | 1 cut(s) | 257 |
| Bsp143I | GATC | 2 cut(s) | 112, 243 |
| BspCNI | CTCAG | 2 cut(s) | 37, 187 |
| BspPI | GGATC | 1 cut(s) | 120 |
| BssMI | GATC | 2 cut(s) | 112, 243 |
| BstDEI | CTNAG | 3 cut(s) | 24, 41, 174 |
| BstHHI | GCGC | 1 cut(s) | 77 |
| BstKTI | GATC | 2 cut(s) | 115, 246 |
| BstMAI | GTCTC | 1 cut(s) | 288 |
| BstMBI | GATC | 2 cut(s) | 112, 243 |
| BstX2I | RGATCY | 2 cut(s) | 112, 243 |
| BstYI | RGATCY | 2 cut(s) | 112, 243 |
| CfoI | GCGC | 1 cut(s) | 77 |
| CviAII | CATG | 2 cut(s) | 6, 196 |
| CviJI | RGCY | 6 cut(s) | 19, 40, 172, 185, 238, 293 |
| CviKI_1 | RGCY | 6 cut(s) | 19, 40, 172, 185, 238, 293 |
| DdeI | CTNAG | 3 cut(s) | 24, 41, 174 |
| DpnI | GATC | 2 cut(s) | 114, 245 |
| DpnII | GATC | 2 cut(s) | 112, 243 |
| Eco88I | CYCGRG | 1 cut(s) | 257 |
| FaeI | CATG | 2 cut(s) | 9, 199 |
| FaiI | YATR | 5 cut(s) | 7, 143, 181, 192, 197 |
| FatI | CATG | 2 cut(s) | 5, 195 |
| FspBI | CTAG | 1 cut(s) | 186 |
| GlaI | GCGC | 1 cut(s) | 76 |
| HhaI | GCGC | 1 cut(s) | 77 |
| Hin1II | CATG | 2 cut(s) | 9, 199 |
| Hin6I | GCGC | 1 cut(s) | 75 |
| HinP1I | GCGC | 1 cut(s) | 75 |
| HinfI | GANTC | 2 cut(s) | 148, 281 |
| Hpy188I | TCNGA | 1 cut(s) | 27 |
| Hpy188III | TCNNGA | 3 cut(s) | 118, 152, 247 |
| HpyAV | CCTTC | 3 cut(s) | 78, 218, 244 |
| HpyCH4V | TGCA | 1 cut(s) | 159 |
| HpyF3I | CTNAG | 3 cut(s) | 24, 41, 174 |
| Hsp92II | CATG | 2 cut(s) | 9, 199 |
| HspAI | GCGC | 1 cut(s) | 75 |
| Kzo9I | GATC | 2 cut(s) | 112, 243 |
| LmnI | GCTCC | 1 cut(s) | 37 |
| LpnPI | CCDG | 1 cut(s) | 97 |
| MaeI | CTAG | 1 cut(s) | 186 |
| MalI | GATC | 2 cut(s) | 114, 245 |
| MboI | GATC | 2 cut(s) | 112, 243 |
| MboII | GAAGA | 2 cut(s) | 54, 112 |
| MflI | RGATCY | 2 cut(s) | 112, 243 |
| MluCI | AATT | 2 cut(s) | 103, 134 |
| MlyI | GAGTC | 1 cut(s) | 290 |
| MnlI | CCTC | 5 cut(s) | 5, 155, 183, 201, 253 |
| MseI | TTAA | 3 cut(s) | 32, 270, 288 |
| Mva1269I | GAATGC | 1 cut(s) | 161 |
| NdeII | GATC | 2 cut(s) | 112, 243 |
| NlaIII | CATG | 2 cut(s) | 9, 199 |
| PaeR7I | CTCGAG | 1 cut(s) | 257 |
| PctI | GAATGC | 1 cut(s) | 161 |
| PfeI | GAWTC | 1 cut(s) | 148 |
| PleI | GAGTC | 1 cut(s) | 289 |
| PpsI | GAGTC | 1 cut(s) | 289 |
| PspXI | VCTCGAGB | 1 cut(s) | 257 |
| PsuI | RGATCY | 2 cut(s) | 112, 243 |
| SaqAI | TTAA | 3 cut(s) | 32, 270, 288 |
| Sau3AI | GATC | 2 cut(s) | 112, 243 |
| SchI | GAGTC | 1 cut(s) | 290 |
| SetI | ASST | 3 cut(s) | 21, 42, 229 |
| Sfr274I | CTCGAG | 1 cut(s) | 257 |
| SlaI | CTCGAG | 1 cut(s) | 257 |
| SmlI | CTYRAG | 2 cut(s) | 116, 257 |
| SmoI | CTYRAG | 2 cut(s) | 116, 257 |
| Sse9I | AATT | 2 cut(s) | 103, 134 |
| SspMI | CTAG | 1 cut(s) | 186 |
| TaqI | TCGA | 2 cut(s) | 248, 258 |
| TasI | AATT | 2 cut(s) | 103, 134 |
| TfiI | GAWTC | 1 cut(s) | 148 |
| Tru1I | TTAA | 3 cut(s) | 32, 270, 288 |
| Tru9I | TTAA | 3 cut(s) | 32, 270, 288 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 91 |
| XhoI | CTCGAG | 1 cut(s) | 257 |
| XspI | CTAG | 1 cut(s) | 186 |