AT5G47920

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0010445
Physical Location & Seq
Reverse (-)
19403171 .. 19404147
977 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G47920.1

Sequence Viewer

Length: 564 bp
ATGAAGAAAGCTACGGCATTGATGAAACATATCGTTGCATTGTTGAGTTCCATGGCGAAGGCAAAATCTATAGCCATAAAGAACAAAACGAGTGCTTTCAAGACACGAGTACTCATGTTGTCTCTAGTGAAACACAAGAAACTCGGGTTCCGTTCCATTTCCAACAAGATTCACCACCTCTTGGGCCATGCGGATCAAGACGACGATAACGACCAGGACCAAGACAAGAACAAGGCTATAGTCCTCTACAACAGCAAGGCATCCACAATGGCTCATCATGAGGAATATGACGTTCACGAGGAGGAAAGCGACAAGTATCCTGATCTGAGGCACACGTTGTTCGAAGGAGAGGAGGACTTCGGGGACTTGGAGGAGGAAGGTCAAGGTAGTTCTGTGATAGATATGGTGAGGACCTCGAAGGAAGAAGAAGGAGAGAATTTCAAGCTAGAAGATGAGATCGACCATGTCGCGGATCTCTTTATTTCTAGGTTTCATAAGCAGATGAAGCTTCAGAAACTCTTGTCCTTCAAGAGGTATCAAGAAATGCTAGCCCGAGGCACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

187

Amino Acids

21.52

Weight (kDa)

6.12

Isoelectric Point (pI)

44.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF761 PF05553 150 - 185 5.9e-17 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 557
AccB7I CCANNNNNTGG 1 cut(s) 181
AccII CGCG 1 cut(s) 470
AciI CCGC 2 cut(s) 191, 470
AclWI GGATC 2 cut(s) 201, 480
AcsI RAATTY 1 cut(s) 436
AcuI CTGAAG 1 cut(s) 494
AfaI GTAC 1 cut(s) 111
AfiI CCNNNNNNNGG 3 cut(s) 181, 469, 531
AflIII ACRYGT 1 cut(s) 333
AgsI TTSAA 3 cut(s) 100, 442, 529
AjnI CCWGG 1 cut(s) 213
AluBI AGCT 3 cut(s) 11, 445, 508
AluI AGCT 3 cut(s) 11, 445, 508
Alw26I GTCTC 1 cut(s) 126
AlwI GGATC 2 cut(s) 201, 480
Ama87I CYCGRG 2 cut(s) 143, 552
AoxI GGCC 1 cut(s) 184
ApoI RAATTY 1 cut(s) 436
AspS9I GGNCC 3 cut(s) 184, 217, 411
AsuHPI GGTGA 2 cut(s) 164, 418
AsuII TTCGAA 1 cut(s) 342
AsuNHI GCTAGC 1 cut(s) 547
AvaI CYCGRG 2 cut(s) 143, 552
AvaII GGWCC 2 cut(s) 217, 411
BanI GGYRCC 1 cut(s) 557
BauI CACGAG 2 cut(s) 105, 296
BceAI ACGGC 1 cut(s) 30
BciT130I CCWGG 1 cut(s) 215
BciVI GTATCC 1 cut(s) 327
BcoDI GTCTC 1 cut(s) 126
BfaI CTAG 4 cut(s) 125, 446, 486, 548
BfmI CTRYAG 2 cut(s) 69, 237
BfuI GTATCC 1 cut(s) 327
BmcAI AGTACT 1 cut(s) 111
Bme1390I CCNGG 1 cut(s) 215
Bme18I GGWCC 2 cut(s) 217, 411
BmeT110I CYCGRG 2 cut(s) 143, 552
BmgT120I GGNCC 3 cut(s) 184, 217, 411
BmiI GGNNCC 2 cut(s) 149, 559
BmrFI CCNGG 1 cut(s) 215
BmsI GCATC 1 cut(s) 269
BmtI GCTAGC 1 cut(s) 551
Bpu14I TTCGAA 1 cut(s) 342
BsaJI CCNNGG 2 cut(s) 51, 553
Bsc4I CCNNNNNNNGG 3 cut(s) 181, 469, 531
BseBI CCWGG 1 cut(s) 215
BseDI CCNNGG 2 cut(s) 51, 553
BseGI GGATG 1 cut(s) 260
BseLI CCNNNNNNNGG 3 cut(s) 181, 469, 531
BseMII CTCAG 1 cut(s) 317
BseRI GAGGAG 3 cut(s) 314, 365, 386
Bsh1236I CGCG 1 cut(s) 470
BshFI GGCC 1 cut(s) 186
BshNI GGYRCC 1 cut(s) 557
BsiHKCI CYCGRG 2 cut(s) 143, 552
BslFI GGGAC 1 cut(s) 377
BslI CCNNNNNNNGG 3 cut(s) 181, 469, 531
BsmAI GTCTC 1 cut(s) 126
BsmFI GGGAC 1 cut(s) 377
BsnI GGCC 1 cut(s) 186
BsoBI CYCGRG 2 cut(s) 143, 552
Bsp119I TTCGAA 1 cut(s) 342
Bsp143I GATC 4 cut(s) 193, 322, 456, 472
Bsp19I CCATGG 1 cut(s) 51
BspACI CCGC 2 cut(s) 191, 470
BspANI GGCC 1 cut(s) 186
BspCNI CTCAG 1 cut(s) 318
BspFNI CGCG 1 cut(s) 470
BspHI TCATGA 1 cut(s) 277
BspLI GGNNCC 2 cut(s) 149, 559
BspOI GCTAGC 1 cut(s) 551
BspPI GGATC 2 cut(s) 201, 480
BspT104I TTCGAA 1 cut(s) 342
BspT107I GGYRCC 1 cut(s) 557
BssECI CCNNGG 2 cut(s) 51, 553
BssMI GATC 4 cut(s) 193, 322, 456, 472
BssSI CACGAG 2 cut(s) 105, 296
BssT1I CCWWGG 1 cut(s) 51
Bst2BI CACGAG 2 cut(s) 105, 296
Bst2UI CCWGG 1 cut(s) 215
BstBI TTCGAA 1 cut(s) 342
BstC8I GCNNGC 1 cut(s) 549
BstDEI CTNAG 1 cut(s) 326
BstDSI CCRYGG 1 cut(s) 51
BstENI CCTNNNNNAGG 1 cut(s) 529
BstF5I GGATG 1 cut(s) 260
BstFNI CGCG 1 cut(s) 470
BstKTI GATC 4 cut(s) 196, 325, 459, 475
BstMAI GTCTC 1 cut(s) 126
BstMBI GATC 4 cut(s) 193, 322, 456, 472
BstMWI GCNNNNNNNGC 1 cut(s) 505
BstNI CCWGG 1 cut(s) 215
BstSCI CCNGG 1 cut(s) 213
BstSFI CTRYAG 2 cut(s) 69, 237
BstUI CGCG 1 cut(s) 470
BstX2I RGATCY 1 cut(s) 472
BstYI RGATCY 1 cut(s) 472
BsuI GTATCC 1 cut(s) 327
BsuRI GGCC 1 cut(s) 186
BtgI CCRYGG 1 cut(s) 51
BtsCI GGATG 1 cut(s) 260
Cac8I GCNNGC 1 cut(s) 549
CciI TCATGA 1 cut(s) 277
Cfr13I GGNCC 3 cut(s) 184, 217, 411
Csp6I GTAC 1 cut(s) 110
CviAII CATG 5 cut(s) 52, 115, 188, 278, 464
CviJI RGCY 8 cut(s) 11, 74, 186, 236, 272, 445, 508, 551
CviKI_1 RGCY 8 cut(s) 11, 74, 186, 236, 272, 445, 508, 551
CviQI GTAC 1 cut(s) 110
DdeI CTNAG 1 cut(s) 326
DpnI GATC 4 cut(s) 195, 324, 458, 474
DpnII GATC 4 cut(s) 193, 322, 456, 472
Eco130I CCWWGG 1 cut(s) 51
Eco47I GGWCC 2 cut(s) 217, 411
Eco57I CTGAAG 1 cut(s) 494
Eco88I CYCGRG 2 cut(s) 143, 552
EcoNI CCTNNNNNAGG 1 cut(s) 529
EcoO109I RGGNCCY 1 cut(s) 411
EcoRII CCWGG 1 cut(s) 213
EcoT14I CCWWGG 1 cut(s) 51
ErhI CCWWGG 1 cut(s) 51
FaeI CATG 5 cut(s) 55, 118, 191, 281, 467
FaqI GGGAC 1 cut(s) 377
FatI CATG 5 cut(s) 51, 114, 187, 277, 463
FokI GGATG 1 cut(s) 247
FspBI CTAG 4 cut(s) 125, 446, 486, 548
HaeIII GGCC 1 cut(s) 186
Hin1II CATG 5 cut(s) 55, 118, 191, 281, 467
HindIII AAGCTT 1 cut(s) 506
HinfI GANTC 1 cut(s) 169
HphI GGTGA 2 cut(s) 164, 418
Hpy166II GTNNAC 1 cut(s) 295
Hpy188I TCNGA 2 cut(s) 327, 513
Hpy188III TCNNGA 7 cut(s) 100, 197, 278, 296, 320, 529, 539
Hpy8I GTNNAC 1 cut(s) 295
Hpy99I CGWCG 1 cut(s) 206
HpyAV CCTTC 6 cut(s) 52, 338, 371, 412, 422, 535
HpyCH4IV ACGT 2 cut(s) 291, 335
HpyCH4V TGCA 1 cut(s) 38
HpyF10VI GCNNNNNNNGC 1 cut(s) 505
HpyF3I CTNAG 1 cut(s) 326
HpySE526I ACGT 2 cut(s) 291, 335
Hsp92II CATG 5 cut(s) 55, 118, 191, 281, 467
Kzo9I GATC 4 cut(s) 193, 322, 456, 472
LpnPI CCDG 3 cut(s) 200, 227, 333
LweI GCATC 1 cut(s) 269
MaeI CTAG 4 cut(s) 125, 446, 486, 548
MaeII ACGT 2 cut(s) 291, 335
MalI GATC 4 cut(s) 195, 324, 458, 474
MboI GATC 4 cut(s) 193, 322, 456, 472
MboII GAAGA 4 cut(s) 16, 434, 437, 461
MflI RGATCY 1 cut(s) 472
MluCI AATT 1 cut(s) 436
MmeI TCCRAC 1 cut(s) 186
MspR9I CCNGG 1 cut(s) 215
MvaI CCWGG 1 cut(s) 215
MvnI CGCG 1 cut(s) 470
MwoI GCNNNNNNNGC 1 cut(s) 505
NcoI CCATGG 1 cut(s) 51
NdeII GATC 4 cut(s) 193, 322, 456, 472
NheI GCTAGC 1 cut(s) 547
NlaIII CATG 5 cut(s) 55, 118, 191, 281, 467
NlaIV GGNNCC 2 cut(s) 149, 559
NspV TTCGAA 1 cut(s) 342
PagI TCATGA 1 cut(s) 277
PcsI WCGNNNNNNNCGW 1 cut(s) 207
PfeI GAWTC 1 cut(s) 169
PflFI GACNNNGTC 1 cut(s) 464
PflMI CCANNNNNTGG 1 cut(s) 181
PpuMI RGGWCCY 1 cut(s) 411
Psp5II RGGWCCY 1 cut(s) 411
Psp6I CCWGG 1 cut(s) 213
PspGI CCWGG 1 cut(s) 213
PspN4I GGNNCC 2 cut(s) 149, 559
PspPI GGNCC 3 cut(s) 184, 217, 411
PspPPI RGGWCCY 1 cut(s) 411
PsuI RGATCY 1 cut(s) 472
PsyI GACNNNGTC 1 cut(s) 464
RsaI GTAC 1 cut(s) 111
RsaNI GTAC 1 cut(s) 110
Sau3AI GATC 4 cut(s) 193, 322, 456, 472
Sau96I GGNCC 3 cut(s) 184, 217, 411
ScaI AGTACT 1 cut(s) 111
ScrFI CCNGG 1 cut(s) 215
SfaNI GCATC 1 cut(s) 269
SfcI CTRYAG 2 cut(s) 69, 237
SfuI TTCGAA 1 cut(s) 342
SinI GGWCC 2 cut(s) 217, 411
Sse9I AATT 1 cut(s) 436
SsiI CCGC 2 cut(s) 191, 470
SspMI CTAG 4 cut(s) 125, 446, 486, 548
StyD4I CCNGG 1 cut(s) 213
StyI CCWWGG 1 cut(s) 51
TaiI ACGT 2 cut(s) 294, 338
TaqI TCGA 3 cut(s) 342, 416, 459
TasI AATT 1 cut(s) 436
TatI WGTACW 1 cut(s) 109
TfiI GAWTC 1 cut(s) 169
TspDTI ATGAA 4 cut(s) 17, 38, 482, 518
TspGWI ACGGA 1 cut(s) 140
Tth111I GACNNNGTC 1 cut(s) 464
Van91I CCANNNNNTGG 1 cut(s) 181
VpaK11BI GGWCC 2 cut(s) 217, 411
XagI CCTNNNNNAGG 1 cut(s) 529
XapI RAATTY 1 cut(s) 436
XspI CTAG 4 cut(s) 125, 446, 486, 548
ZrmI AGTACT 1 cut(s) 111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.