Prupe.3G315300_v2.0.a1

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0010445
Physical Location & Seq
Forward (+)
27225186 .. 27226028
843 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G315300.1

Sequence Viewer

Length: 690 bp
ATGAAGAAGAAAGTATCTGCACTAGTGAAGCAGATAATAGCTGCAGTGAGCTCAATTGCGAAGAATAAAACTCTGGCCCTTAGGAGCAAAACCAGAGCCATAAAGACTCGAATCATTATATTCTCGTTGCTGAACAGGAGGTTTGTGATGAGCTCCATCTCTCACAAGCTCCAGGCTTTGCTAGGGCAGCAGCAACACCATTACCCTGAATCTGATGATGATGATCATCAGGAAGATCAAGACCAAAGCAAGGGCAAAGCCGGCGCACTTGTAGTCAACCCAAGCAGCAGCAACAACGATATTATTAATGTTGTCGTGTCCCACAGATCCCACCAGCACCAGCCAGTTGATCTTATTATTAATCCAACTGATGATGATCACATTCACATGACGGCGGATTCGGAGGATAATATTGATATTGATCATGATATTGATCATGGGTACTTGCACCACTTGGTAGAAGCTCAAGCTCAAGCTGGGGATCATCACCTTGACGTGGATAGATATTGTGAAGAGGAGGATCAATTCGAATCTGTGATAGATATTGTGAAGAACTCAAAGCAACAGGCTGGGCAGGCATTCAGTCTGGAGGACGACATAGACCACGTGGCAGACTTGTTCATAAGGAGGGTCCACCGCCAAATCACAATTCAGAAGCAGCACTCCTTCAAGAGCAAGAGGCACCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

230

Amino Acids

26.08

Weight (kDa)

6.14

Isoelectric Point (pI)

52.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 681
AciI CCGC 2 cut(s) 395, 637
AclWI GGATC 3 cut(s) 321, 489, 528
AcvI CACGTG 1 cut(s) 607
AfaI GTAC 1 cut(s) 443
AfiI CCNNNNNNNGG 2 cut(s) 250, 496
AgsI TTSAA 1 cut(s) 670
AhlI ACTAGT 1 cut(s) 22
AjiI CACGTC 1 cut(s) 496
AjnI CCWGG 1 cut(s) 171
AjuI GAANNNNNNNTTGG 2 cut(s) 633, 665
AluBI AGCT 7 cut(s) 41, 51, 153, 169, 464, 470, 476
AluI AGCT 7 cut(s) 41, 51, 153, 169, 464, 470, 476
Alw21I GWGCWC 2 cut(s) 53, 155
AlwI GGATC 3 cut(s) 321, 489, 528
AoxI GGCC 1 cut(s) 75
ApeKI GCWGC 6 cut(s) 41, 187, 190, 285, 288, 658
ArsI GACNNNNNNTTYG 2 cut(s) 382, 414
AseI ATTAAT 2 cut(s) 306, 360
AspLEI GCGC 1 cut(s) 266
AspS9I GGNCC 2 cut(s) 76, 631
AsuHPI GGTGA 1 cut(s) 479
AsuII TTCGAA 1 cut(s) 528
AvaII GGWCC 1 cut(s) 631
AxyI CCTNAGG 1 cut(s) 80
BanI GGYRCC 1 cut(s) 681
BanII GRGCYC 2 cut(s) 53, 155
BbrPI CACGTG 1 cut(s) 607
Bbv12I GWGCWC 2 cut(s) 53, 155
BbvI GCAGC 6 cut(s) 28, 199, 202, 297, 300, 670
BccI CCATC 1 cut(s) 164
BceAI ACGGC 1 cut(s) 408
BciT130I CCWGG 1 cut(s) 173
BclI TGATCA 4 cut(s) 223, 376, 421, 433
BcuI ACTAGT 1 cut(s) 22
BfaI CTAG 2 cut(s) 23, 182
BfmI CTRYAG 1 cut(s) 42
BisI GCNGC 6 cut(s) 42, 188, 191, 286, 289, 659
BlsI GCNGC 6 cut(s) 43, 189, 192, 287, 290, 660
Bme1390I CCNGG 1 cut(s) 173
Bme18I GGWCC 1 cut(s) 631
BmgBI CACGTC 1 cut(s) 496
BmgT120I GGNCC 2 cut(s) 76, 631
BmiI GGNNCC 2 cut(s) 632, 683
BmrFI CCNGG 1 cut(s) 173
BpmI CTGGAG 2 cut(s) 155, 608
Bpu14I TTCGAA 1 cut(s) 528
BpuEI CTTGAG 2 cut(s) 450, 456
BsaAI YACGTR 1 cut(s) 607
BsaBI GATNNNNATC 5 cut(s) 222, 225, 375, 420, 432
Bsc4I CCNNNNNNNGG 2 cut(s) 250, 496
Bse118I RCCGGY 1 cut(s) 260
Bse1I ACTGG 2 cut(s) 344, 685
Bse21I CCTNAGG 1 cut(s) 80
Bse8I GATNNNNATC 5 cut(s) 222, 225, 375, 420, 432
BseBI CCWGG 1 cut(s) 173
BseJI GATNNNNATC 5 cut(s) 222, 225, 375, 420, 432
BseLI CCNNNNNNNGG 2 cut(s) 250, 496
BseNI ACTGG 2 cut(s) 344, 685
BseRI GAGGAG 1 cut(s) 530
BseXI GCAGC 6 cut(s) 28, 199, 202, 297, 300, 670
BseYI CCCAGC 2 cut(s) 476, 569
BshFI GGCC 1 cut(s) 77
BshNI GGYRCC 1 cut(s) 681
BsiHKAI GWGCWC 2 cut(s) 53, 155
BsiSI CCGG 1 cut(s) 261
BslFI GGGAC 1 cut(s) 304
BslI CCNNNNNNNGG 2 cut(s) 250, 496
BsmFI GGGAC 1 cut(s) 304
BsmI GAATGC 1 cut(s) 578
BsnI GGCC 1 cut(s) 77
Bsp119I TTCGAA 1 cut(s) 528
Bsp1286I GDGCHC 2 cut(s) 53, 155
Bsp143I GATC 9 cut(s) 223, 235, 326, 349, 376, 421, 433, 481, 520
BspACI CCGC 2 cut(s) 395, 637
BspANI GGCC 1 cut(s) 77
BspHI TCATGA 1 cut(s) 424
BspLI GGNNCC 2 cut(s) 632, 683
BspMAI CTGCAG 1 cut(s) 46
BspPI GGATC 3 cut(s) 321, 489, 528
BspT104I TTCGAA 1 cut(s) 528
BspT107I GGYRCC 1 cut(s) 681
BsrFI RCCGGY 1 cut(s) 260
BsrI ACTGG 2 cut(s) 344, 685
BssAI RCCGGY 1 cut(s) 260
BssMI GATC 9 cut(s) 223, 235, 326, 349, 376, 421, 433, 481, 520
Bst2UI CCWGG 1 cut(s) 173
Bst6I CTCTTC 1 cut(s) 507
BstBAI YACGTR 1 cut(s) 607
BstBI TTCGAA 1 cut(s) 528
BstC8I GCNNGC 2 cut(s) 262, 576
BstDEI CTNAG 1 cut(s) 80
BstHHI GCGC 1 cut(s) 266
BstKTI GATC 9 cut(s) 226, 238, 329, 352, 379, 424, 436, 484, 523
BstMBI GATC 9 cut(s) 223, 235, 326, 349, 376, 421, 433, 481, 520
BstMWI GCNNNNNNNGC 3 cut(s) 187, 261, 575
BstNI CCWGG 1 cut(s) 173
BstSCI CCNGG 1 cut(s) 171
BstSFI CTRYAG 1 cut(s) 42
BstV1I GCAGC 6 cut(s) 28, 199, 202, 297, 300, 670
BstX2I RGATCY 1 cut(s) 326
BstYI RGATCY 1 cut(s) 326
Bsu36I CCTNAGG 1 cut(s) 80
BsuRI GGCC 1 cut(s) 77
BtrI CACGTC 1 cut(s) 496
BtsI GCAGTG 1 cut(s) 51
BtsIMutI CAGTG 1 cut(s) 51
Cac8I GCNNGC 2 cut(s) 262, 576
CciI TCATGA 1 cut(s) 424
CfoI GCGC 1 cut(s) 266
Cfr10I RCCGGY 1 cut(s) 260
Cfr13I GGNCC 2 cut(s) 76, 631
Csp6I GTAC 1 cut(s) 442
CviAII CATG 3 cut(s) 388, 425, 437
CviQI GTAC 1 cut(s) 442
DdeI CTNAG 1 cut(s) 80
DpnI GATC 9 cut(s) 225, 237, 328, 351, 378, 423, 435, 483, 522
DpnII GATC 9 cut(s) 223, 235, 326, 349, 376, 421, 433, 481, 520
Eam1104I CTCTTC 1 cut(s) 507
EarI CTCTTC 1 cut(s) 507
EciI GGCGGA 1 cut(s) 410
Ecl136II GAGCTC 2 cut(s) 51, 153
Eco24I GRGCYC 2 cut(s) 53, 155
Eco47I GGWCC 1 cut(s) 631
Eco53kI GAGCTC 2 cut(s) 51, 153
Eco72I CACGTG 1 cut(s) 607
Eco81I CCTNAGG 1 cut(s) 80
EcoICRI GAGCTC 2 cut(s) 51, 153
EcoRII CCWGG 1 cut(s) 171
EcoT38I GRGCYC 2 cut(s) 53, 155
FaeI CATG 3 cut(s) 391, 428, 440
FaiI YATR 7 cut(s) 101, 119, 389, 426, 438, 599, 623
FaqI GGGAC 1 cut(s) 304
FatI CATG 3 cut(s) 387, 424, 436
FbaI TGATCA 4 cut(s) 223, 376, 421, 433
Fnu4HI GCNGC 6 cut(s) 42, 188, 191, 286, 289, 659
FriOI GRGCYC 2 cut(s) 53, 155
Fsp4HI GCNGC 6 cut(s) 42, 188, 191, 286, 289, 659
FspBI CTAG 2 cut(s) 23, 182
GlaI GCGC 1 cut(s) 265
GluI GCNGC 6 cut(s) 42, 188, 191, 286, 289, 659
GsaI CCCAGC 2 cut(s) 480, 573
GsuI CTGGAG 2 cut(s) 155, 608
HaeIII GGCC 1 cut(s) 77
HapII CCGG 1 cut(s) 261
HhaI GCGC 1 cut(s) 266
Hin1II CATG 3 cut(s) 391, 428, 440
Hin6I GCGC 1 cut(s) 264
HinP1I GCGC 1 cut(s) 264
HincII GTYRAC 1 cut(s) 277
HindII GTYRAC 1 cut(s) 277
HinfI GANTC 5 cut(s) 106, 111, 209, 398, 530
HpaII CCGG 1 cut(s) 261
HphI GGTGA 1 cut(s) 479
Hpy166II GTNNAC 2 cut(s) 277, 634
Hpy188I TCNGA 3 cut(s) 214, 403, 654
Hpy188III TCNNGA 5 cut(s) 230, 239, 425, 587, 670
Hpy8I GTNNAC 2 cut(s) 277, 634
HpyAV CCTTC 1 cut(s) 676
HpyCH4IV ACGT 2 cut(s) 495, 606
HpyCH4V TGCA 3 cut(s) 20, 44, 448
HpyF10VI GCNNNNNNNGC 3 cut(s) 187, 261, 575
HpyF3I CTNAG 1 cut(s) 80
HpySE526I ACGT 2 cut(s) 495, 606
Hsp92II CATG 3 cut(s) 391, 428, 440
HspAI GCGC 1 cut(s) 264
KroI GCCGGC 1 cut(s) 260
KroNI GCCGGC 1 cut(s) 262
Ksp22I TGATCA 4 cut(s) 223, 376, 421, 433
Kzo9I GATC 9 cut(s) 223, 235, 326, 349, 376, 421, 433, 481, 520
LmnI GCTCC 3 cut(s) 84, 158, 174
Lsp1109I GCAGC 6 cut(s) 28, 199, 202, 297, 300, 670
MaeI CTAG 2 cut(s) 23, 182
MaeII ACGT 2 cut(s) 495, 606
MalI GATC 9 cut(s) 225, 237, 328, 351, 378, 423, 435, 483, 522
MboI GATC 9 cut(s) 223, 235, 326, 349, 376, 421, 433, 481, 520
MboII GAAGA 6 cut(s) 16, 19, 73, 245, 524, 562
MfeI CAATTG 1 cut(s) 54
MflI RGATCY 1 cut(s) 326
MhlI GDGCHC 2 cut(s) 53, 155
MluCI AATT 3 cut(s) 54, 524, 648
MlyI GAGTC 1 cut(s) 100
MmeI TCCRAC 1 cut(s) 389
MnlI CCTC 7 cut(s) 132, 397, 508, 511, 583, 621, 672
MroNI GCCGGC 1 cut(s) 260
MseI TTAA 2 cut(s) 306, 360
MslI CAYNNNNRTG 1 cut(s) 386
MspI CCGG 1 cut(s) 261
MspR9I CCNGG 1 cut(s) 173
MunI CAATTG 1 cut(s) 54
Mva1269I GAATGC 1 cut(s) 578
MvaI CCWGG 1 cut(s) 173
MwoI GCNNNNNNNGC 3 cut(s) 187, 261, 575
NaeI GCCGGC 1 cut(s) 262
NdeII GATC 9 cut(s) 223, 235, 326, 349, 376, 421, 433, 481, 520
NgoMIV GCCGGC 1 cut(s) 260
NlaIII CATG 3 cut(s) 391, 428, 440
NlaIV GGNNCC 2 cut(s) 632, 683
NspV TTCGAA 1 cut(s) 528
PagI TCATGA 1 cut(s) 424
PctI GAATGC 1 cut(s) 578
PdiI GCCGGC 1 cut(s) 262
PfeI GAWTC 4 cut(s) 111, 209, 398, 530
PkrI GCNGC 6 cut(s) 43, 189, 192, 287, 290, 660
PleI GAGTC 1 cut(s) 100
PmaCI CACGTG 1 cut(s) 607
PmlI CACGTG 1 cut(s) 607
PpsI GAGTC 1 cut(s) 100
Ppu21I YACGTR 1 cut(s) 607
PshBI ATTAAT 2 cut(s) 306, 360
Psp124BI GAGCTC 2 cut(s) 53, 155
Psp6I CCWGG 1 cut(s) 171
PspCI CACGTG 1 cut(s) 607
PspFI CCCAGC 2 cut(s) 476, 569
PspGI CCWGG 1 cut(s) 171
PspN4I GGNNCC 2 cut(s) 632, 683
PspPI GGNCC 2 cut(s) 76, 631
PstI CTGCAG 1 cut(s) 46
PsuI RGATCY 1 cut(s) 326
RsaI GTAC 1 cut(s) 443
RsaNI GTAC 1 cut(s) 442
RseI CAYNNNNRTG 1 cut(s) 386
SacI GAGCTC 2 cut(s) 53, 155
SaqAI TTAA 2 cut(s) 306, 360
SatI GCNGC 6 cut(s) 42, 188, 191, 286, 289, 659
Sau3AI GATC 9 cut(s) 223, 235, 326, 349, 376, 421, 433, 481, 520
Sau96I GGNCC 2 cut(s) 76, 631
SchI GAGTC 1 cut(s) 100
ScrFI CCNGG 1 cut(s) 173
SduI GDGCHC 2 cut(s) 53, 155
SfcI CTRYAG 1 cut(s) 42
SfuI TTCGAA 1 cut(s) 528
SinI GGWCC 1 cut(s) 631
SmiMI CAYNNNNRTG 1 cut(s) 386
SmlI CTYRAG 2 cut(s) 465, 471
SmoI CTYRAG 2 cut(s) 465, 471
SpeI ACTAGT 1 cut(s) 22
Sse9I AATT 3 cut(s) 54, 524, 648
SsiI CCGC 2 cut(s) 395, 637
SspI AATATT 1 cut(s) 412
SspMI CTAG 2 cut(s) 23, 182
SstI GAGCTC 2 cut(s) 53, 155
StyD4I CCNGG 1 cut(s) 171
TaiI ACGT 2 cut(s) 498, 609
TaqI TCGA 2 cut(s) 109, 528
TasI AATT 3 cut(s) 54, 524, 648
TfiI GAWTC 4 cut(s) 111, 209, 398, 530
Tru1I TTAA 2 cut(s) 306, 360
Tru9I TTAA 2 cut(s) 306, 360
TscAI CASTG 1 cut(s) 51
TseI GCWGC 6 cut(s) 41, 187, 190, 285, 288, 658
TspDTI ATGAA 2 cut(s) 17, 610
TspRI CASTG 1 cut(s) 51
VpaK11BI GGWCC 1 cut(s) 631
VspI ATTAAT 2 cut(s) 306, 360
XspI CTAG 2 cut(s) 23, 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.