pycom16g11390

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0010445
Physical Location & Seq
Forward (+)
7947242 .. 7947829
588 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g11390.1

Sequence Viewer

Length: 588 bp
ATGAAGAACAAGGCTTCTGTTTTCTTGAAACATATAATCACCTTGCTGAGTTCCATAGCCAAGGCCAAGTCCTTGGCTATCAAGAGCAAAACTAGCGCCACGAAAGCTCGCCTGATAATGTTCTCATTGGTGAAGAACAAGAAGGTTTTGATGGACACCGTGTCACACAAGATCCACAGTCTCCTAGGCCACGATCACCGCTATCAAGAGGAGGAGGAGGGAGACCAAAGCAAGGCGCTTGTTCTCTACAATGCCATTGCCAATGAGTACTCACATGCAGTTGGTACTTCGACCTGCATGCTTAGGTACAACGGCCAAGATGAGGAGGAGGAGGAGGACGATGATGATAAGTACCCTGATCTCAGGCACTCGTTGTTCGATGAAAATGAGAACTTTGATGATGTCAAGGATGGCGGGTCTGTGATCGATCTGGTGAAGAATTCCAAGGTGGAAGGAGAGGATTTCAAGCTGGAAGACGAGATAGATCACGTTGCGGATTTGTTCATTAATAGGTTCCATAAACAAATGCGCTTGCAAAAGCTTCTCTCCTTCAAAAGGTATCAAGAAATGCTCGACAGAAGCGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

196

Amino Acids

22.48

Weight (kDa)

5.72

Isoelectric Point (pI)

41.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF761 PF05553 158 - 193 1.5e-16 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 581
Acc36I ACCTGC 1 cut(s) 302
AciI CCGC 3 cut(s) 199, 414, 494
AclWI GGATC 1 cut(s) 166
AcoI YGGCCR 1 cut(s) 313
AcsI RAATTY 1 cut(s) 439
AfaI GTAC 4 cut(s) 269, 286, 308, 353
AfiI CCNNNNNNNGG 3 cut(s) 232, 322, 555
AgsI TTSAA 3 cut(s) 28, 466, 553
AhdI GACNNNNNGTC 1 cut(s) 160
AluBI AGCT 3 cut(s) 107, 469, 541
AluI AGCT 3 cut(s) 107, 469, 541
Alw26I GTCTC 2 cut(s) 185, 216
AlwI GGATC 1 cut(s) 166
AoxI GGCC 3 cut(s) 63, 187, 313
ApoI RAATTY 1 cut(s) 439
AseI ATTAAT 1 cut(s) 507
AspA2I CCTAGG 1 cut(s) 184
AspLEI GCGC 3 cut(s) 98, 238, 531
AsuHPI GGTGA 4 cut(s) 31, 142, 188, 445
AvrII CCTAGG 1 cut(s) 184
BbsI GAAGAC 1 cut(s) 480
BccI CCATC 2 cut(s) 145, 404
BceAI ACGGC 1 cut(s) 328
BcgI CGANNNNNNTGC 2 cut(s) 280, 314
BcoDI GTCTC 2 cut(s) 185, 216
BfaI CTAG 2 cut(s) 93, 185
BfoI RGCGCY 2 cut(s) 99, 239
BfuAI ACCTGC 1 cut(s) 302
BlnI CCTAGG 1 cut(s) 184
BmcAI AGTACT 1 cut(s) 269
BmeRI GACNNNNNGTC 1 cut(s) 160
BmiI GGNNCC 1 cut(s) 515
BpiI GAAGAC 1 cut(s) 480
Bpu10I CCTNAGC 1 cut(s) 302
Bsa29I ATCGAT 1 cut(s) 426
BsaI GGTCTC 1 cut(s) 216
BsaJI CCNNGG 4 cut(s) 60, 72, 184, 444
Bsc4I CCNNNNNNNGG 3 cut(s) 232, 322, 555
Bse3DI GCAATG 1 cut(s) 255
BseCI ATCGAT 1 cut(s) 426
BseDI CCNNGG 4 cut(s) 60, 72, 184, 444
BseGI GGATG 1 cut(s) 415
BseLI CCNNNNNNNGG 3 cut(s) 232, 322, 555
BseMI GCAATG 1 cut(s) 255
BseMII CTCAG 2 cut(s) 38, 376
BseRI GAGGAG 7 cut(s) 224, 227, 230, 338, 341, 344, 347
BshFI GGCC 3 cut(s) 65, 189, 315
BshVI ATCGAT 1 cut(s) 426
BslI CCNNNNNNNGG 3 cut(s) 232, 322, 555
BsmAI GTCTC 2 cut(s) 185, 216
BsnI GGCC 3 cut(s) 65, 189, 315
Bso31I GGTCTC 1 cut(s) 216
Bsp143I GATC 6 cut(s) 171, 193, 358, 423, 427, 484
BspACI CCGC 3 cut(s) 199, 414, 494
BspANI GGCC 3 cut(s) 65, 189, 315
BspCNI CTCAG 2 cut(s) 39, 375
BspDI ATCGAT 1 cut(s) 426
BspLI GGNNCC 1 cut(s) 515
BspMI ACCTGC 1 cut(s) 302
BspPI GGATC 1 cut(s) 166
BspTNI GGTCTC 1 cut(s) 216
BsrDI GCAATG 1 cut(s) 255
BssECI CCNNGG 4 cut(s) 60, 72, 184, 444
BssMI GATC 6 cut(s) 171, 193, 358, 423, 427, 484
BssT1I CCWWGG 4 cut(s) 60, 72, 184, 444
Bst4CI ACNGT 2 cut(s) 160, 179
BstC8I GCNNGC 3 cut(s) 109, 299, 533
BstDEI CTNAG 3 cut(s) 47, 302, 362
BstENI CCTNNNNNAGG 1 cut(s) 553
BstF5I GGATG 1 cut(s) 415
BstH2I RGCGCY 2 cut(s) 99, 239
BstHHI GCGC 3 cut(s) 98, 238, 531
BstKTI GATC 6 cut(s) 174, 196, 361, 426, 430, 487
BstMAI GTCTC 2 cut(s) 185, 216
BstMBI GATC 6 cut(s) 171, 193, 358, 423, 427, 484
BstMWI GCNNNNNNNGC 2 cut(s) 93, 104
BstNSI RCATGY 2 cut(s) 278, 301
BstV2I GAAGAC 1 cut(s) 480
BstX2I RGATCY 1 cut(s) 171
BstXI CCANNNNNNTGG 1 cut(s) 73
BstYI RGATCY 1 cut(s) 171
Bsu15I ATCGAT 1 cut(s) 426
BsuRI GGCC 3 cut(s) 65, 189, 315
BsuTUI ATCGAT 1 cut(s) 426
BtsCI GGATG 1 cut(s) 415
BveI ACCTGC 1 cut(s) 302
Cac8I GCNNGC 3 cut(s) 109, 299, 533
CfoI GCGC 3 cut(s) 98, 238, 531
ClaI ATCGAT 1 cut(s) 426
CseI GACGC 1 cut(s) 571
Csp6I GTAC 4 cut(s) 268, 285, 307, 352
CviAII CATG 2 cut(s) 275, 298
CviJI RGCY 9 cut(s) 14, 59, 65, 77, 107, 189, 315, 469, 541
CviKI_1 RGCY 9 cut(s) 14, 59, 65, 77, 107, 189, 315, 469, 541
CviQI GTAC 4 cut(s) 268, 285, 307, 352
DdeI CTNAG 3 cut(s) 47, 302, 362
DpnI GATC 6 cut(s) 173, 195, 360, 425, 429, 486
DpnII GATC 6 cut(s) 171, 193, 358, 423, 427, 484
DrdI GACNNNNNNGTC 1 cut(s) 581
DriI GACNNNNNGTC 1 cut(s) 160
DseDI GACNNNNNNGTC 1 cut(s) 581
EaeI YGGCCR 1 cut(s) 313
Eam1105I GACNNNNNGTC 1 cut(s) 160
Eco130I CCWWGG 4 cut(s) 60, 72, 184, 444
Eco31I GGTCTC 1 cut(s) 216
EcoNI CCTNNNNNAGG 1 cut(s) 553
EcoRI GAATTC 1 cut(s) 439
EcoT14I CCWWGG 4 cut(s) 60, 72, 184, 444
ErhI CCWWGG 4 cut(s) 60, 72, 184, 444
FaeI CATG 2 cut(s) 278, 301
FaiI YATR 6 cut(s) 33, 35, 56, 276, 299, 519
FatI CATG 2 cut(s) 274, 297
FauI CCCGC 1 cut(s) 407
FokI GGATG 1 cut(s) 422
FspBI CTAG 2 cut(s) 93, 185
GlaI GCGC 3 cut(s) 97, 237, 530
HaeII RGCGCY 2 cut(s) 99, 239
HaeIII GGCC 3 cut(s) 65, 189, 315
HgaI GACGC 1 cut(s) 571
HhaI GCGC 3 cut(s) 98, 238, 531
Hin1II CATG 2 cut(s) 278, 301
Hin6I GCGC 3 cut(s) 96, 236, 529
HinP1I GCGC 3 cut(s) 96, 236, 529
HindIII AAGCTT 1 cut(s) 539
HphI GGTGA 4 cut(s) 31, 142, 188, 445
Hpy188I TCNGA 1 cut(s) 587
Hpy188III TCNNGA 4 cut(s) 25, 82, 206, 563
HpyAV CCTTC 3 cut(s) 136, 446, 559
HpyCH4III ACNGT 2 cut(s) 160, 179
HpyCH4IV ACGT 1 cut(s) 489
HpyCH4V TGCA 3 cut(s) 278, 297, 535
HpyF10VI GCNNNNNNNGC 2 cut(s) 93, 104
HpyF3I CTNAG 3 cut(s) 47, 302, 362
HpySE526I ACGT 1 cut(s) 489
Hsp92II CATG 2 cut(s) 278, 301
HspAI GCGC 3 cut(s) 96, 236, 529
Kzo9I GATC 6 cut(s) 171, 193, 358, 423, 427, 484
LpnPI CCDG 6 cut(s) 125, 307, 349, 369, 416, 455
MaeI CTAG 2 cut(s) 93, 185
MaeII ACGT 1 cut(s) 489
MaeIII GTNAC 1 cut(s) 162
MalI GATC 6 cut(s) 173, 195, 360, 425, 429, 486
MboI GATC 6 cut(s) 171, 193, 358, 423, 427, 484
MboII GAAGA 4 cut(s) 16, 145, 448, 485
MflI RGATCY 1 cut(s) 171
MluCI AATT 1 cut(s) 439
MseI TTAA 1 cut(s) 507
MwoI GCNNNNNNNGC 2 cut(s) 93, 104
NdeII GATC 6 cut(s) 171, 193, 358, 423, 427, 484
NlaIII CATG 2 cut(s) 278, 301
NlaIV GGNNCC 1 cut(s) 515
NmuCI GTSAC 1 cut(s) 162
NspI RCATGY 2 cut(s) 278, 301
PaeI GCATGC 1 cut(s) 301
PcsI WCGNNNNNNNCGW 1 cut(s) 579
PshBI ATTAAT 1 cut(s) 507
PspN4I GGNNCC 1 cut(s) 515
PsuI RGATCY 1 cut(s) 171
RsaI GTAC 4 cut(s) 269, 286, 308, 353
RsaNI GTAC 4 cut(s) 268, 285, 307, 352
SaqAI TTAA 1 cut(s) 507
Sau3AI GATC 6 cut(s) 171, 193, 358, 423, 427, 484
ScaI AGTACT 1 cut(s) 269
SphI GCATGC 1 cut(s) 301
Sse9I AATT 1 cut(s) 439
SsiI CCGC 3 cut(s) 199, 414, 494
SspMI CTAG 2 cut(s) 93, 185
StyI CCWWGG 4 cut(s) 60, 72, 184, 444
TaaI ACNGT 2 cut(s) 160, 179
TaiI ACGT 1 cut(s) 492
TaqI TCGA 4 cut(s) 290, 378, 426, 573
TasI AATT 1 cut(s) 439
TatI WGTACW 1 cut(s) 267
Tru1I TTAA 1 cut(s) 507
Tru9I TTAA 1 cut(s) 507
TseFI GTSAC 1 cut(s) 162
Tsp45I GTSAC 1 cut(s) 162
TspDTI ATGAA 3 cut(s) 17, 396, 493
VspI ATTAAT 1 cut(s) 507
XagI CCTNNNNNAGG 1 cut(s) 553
XapI RAATTY 1 cut(s) 439
XceI RCATGY 2 cut(s) 278, 301
XmaJI CCTAGG 1 cut(s) 184
XspI CTAG 2 cut(s) 93, 185
ZrmI AGTACT 1 cut(s) 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.