Cotton fibre expressed protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G47920 |
| fragaria_vesca | FvH4_4g22190 |
| malus_domestica | MD13G1134000.v1.1 MD16G1144600.v1.1 MD17G1003900.v1.1 |
| prunus_persica | Prupe.1G211600_v2.0.a1 Prupe.3G315300_v2.0.a1 |
| pyrus_communis | pycom13g11670 pycom16g11390 pycom17g00060 |
| rosa_chinensis | RchiOBHm_Chr4g0428421 |
| rosa_laevigata | RLG00000007152 |
| rosa_multiflora | Rmu_sc0004698.1_g000001 Rmu_sc0010468.1_g000004 |
| rosa_roxburghii | Rroxscaffold_5G00370090 |
| rosa_rugosa | Rorug04G0225300 |
| rosa_samantha | Rh4AG282600 Rh4BG288200 Rh4CG304000 Rh4DG285400 |
| rosa_wichuraiana | Rw4G024530 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 2 cut(s) | 98, 289 |
| AciI | CCGC | 5 cut(s) | 98, 109, 199, 417, 497 |
| AclWI | GGATC | 2 cut(s) | 166, 241 |
| AcoI | YGGCCR | 3 cut(s) | 75, 187, 324 |
| AcsI | RAATTY | 1 cut(s) | 442 |
| AfaI | GTAC | 2 cut(s) | 284, 356 |
| AgsI | TTSAA | 3 cut(s) | 28, 469, 556 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 160 |
| AjiI | CACGTC | 1 cut(s) | 406 |
| AluBI | AGCT | 3 cut(s) | 312, 472, 544 |
| AluI | AGCT | 3 cut(s) | 312, 472, 544 |
| Alw21I | GWGCWC | 1 cut(s) | 53 |
| Alw26I | GTCTC | 1 cut(s) | 168 |
| AlwI | GGATC | 2 cut(s) | 166, 241 |
| AoxI | GGCC | 4 cut(s) | 75, 187, 249, 324 |
| ApoI | RAATTY | 1 cut(s) | 442 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 380, 412 |
| AspLEI | GCGC | 1 cut(s) | 98 |
| AspS9I | GGNCC | 1 cut(s) | 250 |
| AsuHPI | GGTGA | 2 cut(s) | 112, 436 |
| BalI | TGGCCA | 1 cut(s) | 77 |
| BbsI | GAAGAC | 1 cut(s) | 351 |
| Bbv12I | GWGCWC | 1 cut(s) | 53 |
| BccI | CCATC | 4 cut(s) | 86, 145, 278, 407 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 235, 269 |
| BclI | TGATCA | 1 cut(s) | 487 |
| BcoDI | GTCTC | 1 cut(s) | 168 |
| BfaI | CTAG | 1 cut(s) | 575 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 186 |
| BmcAI | AGTACT | 1 cut(s) | 284 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 160 |
| BmgBI | CACGTC | 1 cut(s) | 406 |
| BmgT120I | GGNCC | 1 cut(s) | 250 |
| BpiI | GAAGAC | 1 cut(s) | 351 |
| BsaBI | GATNNNNATC | 1 cut(s) | 431 |
| BsaJI | CCNNGG | 5 cut(s) | 72, 184, 321, 327, 447 |
| Bse8I | GATNNNNATC | 1 cut(s) | 431 |
| BseDI | CCNNGG | 5 cut(s) | 72, 184, 321, 327, 447 |
| BseGI | GGATG | 1 cut(s) | 418 |
| BseJI | GATNNNNATC | 1 cut(s) | 431 |
| BseMII | CTCAG | 1 cut(s) | 356 |
| BseRI | GAGGAG | 2 cut(s) | 173, 344 |
| Bsh1236I | CGCG | 2 cut(s) | 98, 289 |
| BshFI | GGCC | 4 cut(s) | 77, 189, 251, 326 |
| BsiHKAI | GWGCWC | 1 cut(s) | 53 |
| BsmAI | GTCTC | 1 cut(s) | 168 |
| BsnI | GGCC | 4 cut(s) | 77, 189, 251, 326 |
| Bsp1286I | GDGCHC | 1 cut(s) | 53 |
| Bsp143I | GATC | 4 cut(s) | 171, 233, 361, 487 |
| Bsp19I | CCATGG | 1 cut(s) | 321 |
| BspACI | CCGC | 5 cut(s) | 98, 109, 199, 417, 497 |
| BspANI | GGCC | 4 cut(s) | 77, 189, 251, 326 |
| BspCNI | CTCAG | 1 cut(s) | 357 |
| BspFNI | CGCG | 2 cut(s) | 98, 289 |
| BspPI | GGATC | 2 cut(s) | 166, 241 |
| BssECI | CCNNGG | 5 cut(s) | 72, 184, 321, 327, 447 |
| BssMI | GATC | 4 cut(s) | 171, 233, 361, 487 |
| BssT1I | CCWWGG | 3 cut(s) | 72, 321, 447 |
| Bst4CI | ACNGT | 1 cut(s) | 160 |
| Bst6I | CTCTTC | 1 cut(s) | 213 |
| BstC8I | GCNNGC | 2 cut(s) | 109, 536 |
| BstDEI | CTNAG | 1 cut(s) | 365 |
| BstDSI | CCRYGG | 1 cut(s) | 321 |
| BstF5I | GGATG | 1 cut(s) | 418 |
| BstFNI | CGCG | 2 cut(s) | 98, 289 |
| BstHHI | GCGC | 1 cut(s) | 98 |
| BstKTI | GATC | 4 cut(s) | 174, 236, 364, 490 |
| BstMAI | GTCTC | 1 cut(s) | 168 |
| BstMBI | GATC | 4 cut(s) | 171, 233, 361, 487 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 93, 104, 186 |
| BstUI | CGCG | 2 cut(s) | 98, 289 |
| BstV2I | GAAGAC | 1 cut(s) | 351 |
| BstX2I | RGATCY | 1 cut(s) | 171 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 73 |
| BstYI | RGATCY | 1 cut(s) | 171 |
| BsuRI | GGCC | 4 cut(s) | 77, 189, 251, 326 |
| BtgI | CCRYGG | 1 cut(s) | 321 |
| BtgZI | GCGATG | 1 cut(s) | 256 |
| BtrI | CACGTC | 1 cut(s) | 406 |
| BtsCI | GGATG | 1 cut(s) | 418 |
| Cac8I | GCNNGC | 2 cut(s) | 109, 536 |
| CfoI | GCGC | 1 cut(s) | 98 |
| Cfr13I | GGNCC | 1 cut(s) | 250 |
| Csp6I | GTAC | 2 cut(s) | 283, 355 |
| CviAII | CATG | 1 cut(s) | 322 |
| CviQI | GTAC | 2 cut(s) | 283, 355 |
| DdeI | CTNAG | 1 cut(s) | 365 |
| DpnI | GATC | 4 cut(s) | 173, 235, 363, 489 |
| DpnII | GATC | 4 cut(s) | 171, 233, 361, 487 |
| DriI | GACNNNNNGTC | 1 cut(s) | 160 |
| EaeI | YGGCCR | 3 cut(s) | 75, 187, 324 |
| Eam1104I | CTCTTC | 1 cut(s) | 213 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 160 |
| EarI | CTCTTC | 1 cut(s) | 213 |
| Eco130I | CCWWGG | 3 cut(s) | 72, 321, 447 |
| Eco32I | GATATC | 2 cut(s) | 433, 563 |
| EcoO109I | RGGNCCY | 1 cut(s) | 250 |
| EcoRI | GAATTC | 1 cut(s) | 442 |
| EcoRV | GATATC | 2 cut(s) | 433, 563 |
| EcoT14I | CCWWGG | 3 cut(s) | 72, 321, 447 |
| ErhI | CCWWGG | 3 cut(s) | 72, 321, 447 |
| FaeI | CATG | 1 cut(s) | 325 |
| FaiI | YATR | 4 cut(s) | 56, 116, 323, 522 |
| FatI | CATG | 1 cut(s) | 321 |
| FauI | CCCGC | 2 cut(s) | 116, 410 |
| FbaI | TGATCA | 1 cut(s) | 487 |
| FokI | GGATG | 1 cut(s) | 425 |
| FspBI | CTAG | 1 cut(s) | 575 |
| GlaI | GCGC | 1 cut(s) | 97 |
| HaeIII | GGCC | 4 cut(s) | 77, 189, 251, 326 |
| HhaI | GCGC | 1 cut(s) | 98 |
| Hin1II | CATG | 1 cut(s) | 325 |
| Hin6I | GCGC | 1 cut(s) | 96 |
| HinP1I | GCGC | 1 cut(s) | 96 |
| HindIII | AAGCTT | 1 cut(s) | 542 |
| HphI | GGTGA | 2 cut(s) | 112, 436 |
| Hpy188I | TCNGA | 2 cut(s) | 238, 366 |
| Hpy188III | TCNNGA | 5 cut(s) | 25, 82, 436, 556, 566 |
| Hpy99I | CGWCG | 4 cut(s) | 218, 230, 386, 407 |
| HpyAV | CCTTC | 3 cut(s) | 136, 403, 449 |
| HpyCH4III | ACNGT | 1 cut(s) | 160 |
| HpyCH4IV | ACGT | 1 cut(s) | 405 |
| HpyCH4V | TGCA | 1 cut(s) | 538 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 93, 104, 186 |
| HpyF3I | CTNAG | 1 cut(s) | 365 |
| HpySE526I | ACGT | 1 cut(s) | 405 |
| Hsp92II | CATG | 1 cut(s) | 325 |
| HspAI | GCGC | 1 cut(s) | 96 |
| Ksp22I | TGATCA | 1 cut(s) | 487 |
| Kzo9I | GATC | 4 cut(s) | 171, 233, 361, 487 |
| LpnPI | CCDG | 6 cut(s) | 106, 282, 372, 458, 476, 499 |
| MaeI | CTAG | 1 cut(s) | 575 |
| MaeII | ACGT | 1 cut(s) | 405 |
| MalI | GATC | 4 cut(s) | 173, 235, 363, 489 |
| MboI | GATC | 4 cut(s) | 171, 233, 361, 487 |
| MboII | GAAGA | 5 cut(s) | 16, 145, 230, 356, 488 |
| MflI | RGATCY | 1 cut(s) | 171 |
| MhlI | GDGCHC | 1 cut(s) | 53 |
| MlsI | TGGCCA | 1 cut(s) | 77 |
| MluCI | AATT | 1 cut(s) | 442 |
| MluNI | TGGCCA | 1 cut(s) | 77 |
| Mox20I | TGGCCA | 1 cut(s) | 77 |
| MscI | TGGCCA | 1 cut(s) | 77 |
| MseI | TTAA | 1 cut(s) | 510 |
| Msp20I | TGGCCA | 1 cut(s) | 77 |
| MvnI | CGCG | 2 cut(s) | 98, 289 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 93, 104, 186 |
| NcoI | CCATGG | 1 cut(s) | 321 |
| NdeII | GATC | 4 cut(s) | 171, 233, 361, 487 |
| NlaIII | CATG | 1 cut(s) | 325 |
| NmeAIII | GCCGAG | 2 cut(s) | 165, 352 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 222, 387 |
| PspPI | GGNCC | 1 cut(s) | 250 |
| PsuI | RGATCY | 1 cut(s) | 171 |
| RsaI | GTAC | 2 cut(s) | 284, 356 |
| RsaNI | GTAC | 2 cut(s) | 283, 355 |
| SaqAI | TTAA | 1 cut(s) | 510 |
| Sau3AI | GATC | 4 cut(s) | 171, 233, 361, 487 |
| Sau96I | GGNCC | 1 cut(s) | 250 |
| ScaI | AGTACT | 1 cut(s) | 284 |
| SduI | GDGCHC | 1 cut(s) | 53 |
| SetI | ASST | 8 cut(s) | 44, 147, 314, 408, 474, 495, 518, 546 |
| Sse9I | AATT | 1 cut(s) | 442 |
| SsiI | CCGC | 5 cut(s) | 98, 109, 199, 417, 497 |
| SspMI | CTAG | 1 cut(s) | 575 |
| StyI | CCWWGG | 3 cut(s) | 72, 321, 447 |
| TaaI | ACNGT | 1 cut(s) | 160 |
| TaiI | ACGT | 1 cut(s) | 408 |
| TaqI | TCGA | 3 cut(s) | 308, 374, 381 |
| TasI | AATT | 1 cut(s) | 442 |
| TatI | WGTACW | 1 cut(s) | 282 |
| Tru1I | TTAA | 1 cut(s) | 510 |
| Tru9I | TTAA | 1 cut(s) | 510 |
| TspDTI | ATGAA | 4 cut(s) | 17, 146, 496, 509 |
| XapI | RAATTY | 1 cut(s) | 442 |
| XspI | CTAG | 1 cut(s) | 575 |
| ZrmI | AGTACT | 1 cut(s) | 284 |