Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0010445

Physical Location & Seq

Genomic Coordinates Forward (+)

8053369 .. 8053956

Gene Structure 588 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g11670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGAAGAATAAGGCTTCTGTTTTCTTGAAGCGGATAATCACATTGTTGAGCTCAATAGCCAAAGCCAAGTCCCTCGCCATCAAGAGCAAAACCAGCGCCGCTAAAGCTCGCCTGATAATGTTTTCATTGGTGAAGAACAAGAAGGTTTTGATGGACACTGTGTCGCACAAGATCCACAGCCTATTAGGTCACGATCACCGTGATCAAGAGGAGGCGGAGGAAGGAGACCAAAACAAGGCGCTTGTTCTCTACAATGCCATGGCCAATGAGTACTCGCATACAGCTGGTACTTCAAGCTACATGCGAAGGTACAATGGTGAAGATGAGGAGGAGGACGATGACGATGATAAGTACCCTGATCTCAGGCACTCGTTGTTCGATGAAAATGAGAACTTTGACGATGTCAAAGATGGCGGGTCTGTGATCGATCTGGTGAAGAATTCCAAAGAGGAAGGACAGGATTTCAAGCTGGAAGACGAGATAGACCACGTTGCGGATTTGTTCATTAACAGGTTTCACAAACAAATGCGCTTGCAAAAGCTTCTATCCTTCAAAAGGCATCAAGAAATGCTCGACAGAAGCGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF761

Protein Analysis

196

Amino Acids

22.49

Weight (kDa)

5.86

Isoelectric Point (pI)

42.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF761	PF05553	158 - 193	1.7e-15	Cotton fibre expressed protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010445)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47920
fragaria_vesca	FvH4_4g22190
malus_domestica	MD13G1134000.v1.1 MD16G1144600.v1.1 MD17G1003900.v1.1
prunus_persica	Prupe.1G211600_v2.0.a1 Prupe.3G315300_v2.0.a1
pyrus_communis	pycom13g11670 pycom16g11390 pycom17g00060
rosa_chinensis	RchiOBHm_Chr4g0428421
rosa_laevigata	RLG00000007152
rosa_multiflora	Rmu_sc0004698.1_g000001 Rmu_sc0010468.1_g000004
rosa_roxburghii	Rroxscaffold_5G00370090
rosa_rugosa	Rorug04G0225300
rosa_samantha	Rh4AG282600 Rh4BG288200 Rh4CG304000 Rh4DG285400
rosa_wichuraiana	Rw4G024530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	581
AciI	CCGC	5 cut(s)	31, 99, 215, 414, 494
AclWI	GGATC	1 cut(s)	166
AcoI	YGGCCR	1 cut(s)	261
AcsI	RAATTY	1 cut(s)	439
AfaI	GTAC	4 cut(s)	272, 289, 311, 353
AfiI	CCNNNNNNNGG	3 cut(s)	235, 493, 555
AgsI	TTSAA	4 cut(s)	28, 294, 466, 553
AhdI	GACNNNNNGTC	1 cut(s)	160
AluBI	AGCT	6 cut(s)	51, 107, 284, 297, 469, 541
AluI	AGCT	6 cut(s)	51, 107, 284, 297, 469, 541
Alw21I	GWGCWC	1 cut(s)	53
Alw26I	GTCTC	1 cut(s)	219
AlwI	GGATC	1 cut(s)	166
AoxI	GGCC	1 cut(s)	261
ApoI	RAATTY	1 cut(s)	439
AspLEI	GCGC	3 cut(s)	98, 241, 531
AsuHPI	GGTGA	4 cut(s)	142, 188, 329, 445
BaeI	ACNNNNGTAYC	2 cut(s)	301, 334
BalI	TGGCCA	1 cut(s)	263
BanII	GRGCYC	1 cut(s)	53
BbsI	GAAGAC	1 cut(s)	480
Bbv12I	GWGCWC	1 cut(s)	53
BccI	CCATC	3 cut(s)	86, 145, 404
BclI	TGATCA	1 cut(s)	202
BcoDI	GTCTC	1 cut(s)	219
BfoI	RGCGCY	2 cut(s)	99, 242
BisI	GCNGC	1 cut(s)	99
BlsI	GCNGC	1 cut(s)	100
BmcAI	AGTACT	1 cut(s)	272
BmeRI	GACNNNNNGTC	1 cut(s)	160
BmsI	GCATC	1 cut(s)	568
BpiI	GAAGAC	1 cut(s)	480
Bsa29I	ATCGAT	1 cut(s)	426
BsaI	GGTCTC	1 cut(s)	219
BsaJI	CCNNGG	1 cut(s)	258
Bsc4I	CCNNNNNNNGG	3 cut(s)	235, 493, 555
BseCI	ATCGAT	1 cut(s)	426
BseDI	CCNNGG	1 cut(s)	258
BseLI	CCNNNNNNNGG	3 cut(s)	235, 493, 555
BseMII	CTCAG	1 cut(s)	376
BseRI	GAGGAG	3 cut(s)	224, 341, 344
BshFI	GGCC	1 cut(s)	263
BshVI	ATCGAT	1 cut(s)	426
BsiHKAI	GWGCWC	1 cut(s)	53
BslFI	GGGAC	1 cut(s)	55
BslI	CCNNNNNNNGG	3 cut(s)	235, 493, 555
BsmAI	GTCTC	1 cut(s)	219
BsmFI	GGGAC	1 cut(s)	55
BsnI	GGCC	1 cut(s)	263
Bso31I	GGTCTC	1 cut(s)	219
Bsp1286I	GDGCHC	1 cut(s)	53
Bsp143I	GATC	6 cut(s)	171, 193, 202, 358, 423, 427
Bsp19I	CCATGG	1 cut(s)	258
BspACI	CCGC	5 cut(s)	31, 99, 215, 414, 494
BspANI	GGCC	1 cut(s)	263
BspCNI	CTCAG	1 cut(s)	375
BspDI	ATCGAT	1 cut(s)	426
BspPI	GGATC	1 cut(s)	166
BspTNI	GGTCTC	1 cut(s)	219
BssECI	CCNNGG	1 cut(s)	258
BssMI	GATC	6 cut(s)	171, 193, 202, 358, 423, 427
BssT1I	CCWWGG	1 cut(s)	258
Bst4CI	ACNGT	2 cut(s)	160, 200
BstC8I	GCNNGC	2 cut(s)	109, 533
BstDEI	CTNAG	1 cut(s)	362
BstDSI	CCRYGG	1 cut(s)	258
BstENI	CCTNNNNNAGG	1 cut(s)	553
BstH2I	RGCGCY	2 cut(s)	99, 242
BstHHI	GCGC	3 cut(s)	98, 241, 531
BstKTI	GATC	6 cut(s)	174, 196, 205, 361, 426, 430
BstMAI	GTCTC	1 cut(s)	219
BstMBI	GATC	6 cut(s)	171, 193, 202, 358, 423, 427
BstMWI	GCNNNNNNNGC	2 cut(s)	93, 104
BstNSI	RCATGY	1 cut(s)	304
BstV2I	GAAGAC	1 cut(s)	480
BstX2I	RGATCY	1 cut(s)	171
BstYI	RGATCY	1 cut(s)	171
Bsu15I	ATCGAT	1 cut(s)	426
BsuRI	GGCC	1 cut(s)	263
BsuTUI	ATCGAT	1 cut(s)	426
BtgI	CCRYGG	1 cut(s)	258
BtsIMutI	CAGTG	1 cut(s)	156
Cac8I	GCNNGC	2 cut(s)	109, 533
CfoI	GCGC	3 cut(s)	98, 241, 531
ClaI	ATCGAT	1 cut(s)	426
CseI	GACGC	1 cut(s)	571
Csp6I	GTAC	4 cut(s)	271, 288, 310, 352
CviAII	CATG	2 cut(s)	259, 301
CviQI	GTAC	4 cut(s)	271, 288, 310, 352
DdeI	CTNAG	1 cut(s)	362
DpnI	GATC	6 cut(s)	173, 195, 204, 360, 425, 429
DpnII	GATC	6 cut(s)	171, 193, 202, 358, 423, 427
DrdI	GACNNNNNNGTC	1 cut(s)	581
DriI	GACNNNNNGTC	1 cut(s)	160
DseDI	GACNNNNNNGTC	1 cut(s)	581
EaeI	YGGCCR	1 cut(s)	261
Eam1105I	GACNNNNNGTC	1 cut(s)	160
EciI	GGCGGA	1 cut(s)	230
Ecl136II	GAGCTC	1 cut(s)	51
Eco130I	CCWWGG	1 cut(s)	258
Eco24I	GRGCYC	1 cut(s)	53
Eco31I	GGTCTC	1 cut(s)	219
Eco53kI	GAGCTC	1 cut(s)	51
EcoICRI	GAGCTC	1 cut(s)	51
EcoNI	CCTNNNNNAGG	1 cut(s)	553
EcoRI	GAATTC	1 cut(s)	439
EcoT14I	CCWWGG	1 cut(s)	258
EcoT38I	GRGCYC	1 cut(s)	53
ErhI	CCWWGG	1 cut(s)	258
FaeI	CATG	2 cut(s)	262, 304
FaiI	YATR	3 cut(s)	260, 279, 302
FaqI	GGGAC	1 cut(s)	55
FatI	CATG	2 cut(s)	258, 300
FauI	CCCGC	1 cut(s)	407
FbaI	TGATCA	1 cut(s)	202
Fnu4HI	GCNGC	1 cut(s)	99
FriOI	GRGCYC	1 cut(s)	53
Fsp4HI	GCNGC	1 cut(s)	99
GlaI	GCGC	3 cut(s)	97, 240, 530
GluI	GCNGC	1 cut(s)	99
HaeII	RGCGCY	2 cut(s)	99, 242
HaeIII	GGCC	1 cut(s)	263
HgaI	GACGC	1 cut(s)	571
HhaI	GCGC	3 cut(s)	98, 241, 531
Hin1II	CATG	2 cut(s)	262, 304
Hin6I	GCGC	3 cut(s)	96, 239, 529
HinP1I	GCGC	3 cut(s)	96, 239, 529
HindIII	AAGCTT	1 cut(s)	539
HphI	GGTGA	4 cut(s)	142, 188, 329, 445
Hpy188I	TCNGA	1 cut(s)	587
Hpy188III	TCNNGA	5 cut(s)	25, 82, 191, 206, 563
HpyAV	CCTTC	5 cut(s)	136, 215, 300, 446, 559
HpyCH4III	ACNGT	2 cut(s)	160, 200
HpyCH4IV	ACGT	1 cut(s)	489
HpyCH4V	TGCA	1 cut(s)	535
HpyF10VI	GCNNNNNNNGC	2 cut(s)	93, 104
HpyF3I	CTNAG	1 cut(s)	362
HpySE526I	ACGT	1 cut(s)	489
Hsp92II	CATG	2 cut(s)	262, 304
HspAI	GCGC	3 cut(s)	96, 239, 529
Ksp22I	TGATCA	1 cut(s)	202
Kzo9I	GATC	6 cut(s)	171, 193, 202, 358, 423, 427
LpnPI	CCDG	9 cut(s)	106, 125, 270, 349, 369, 416, 443, 455, 496
LweI	GCATC	1 cut(s)	568
MaeII	ACGT	1 cut(s)	489
MaeIII	GTNAC	1 cut(s)	188
MalI	GATC	6 cut(s)	173, 195, 204, 360, 425, 429
MboI	GATC	6 cut(s)	171, 193, 202, 358, 423, 427
MboII	GAAGA	5 cut(s)	16, 145, 332, 448, 485
MflI	RGATCY	1 cut(s)	171
MhlI	GDGCHC	1 cut(s)	53
MlsI	TGGCCA	1 cut(s)	263
MluCI	AATT	1 cut(s)	439
MluNI	TGGCCA	1 cut(s)	263
MnlI	CCTC	8 cut(s)	83, 202, 205, 211, 319, 322, 325, 442
Mox20I	TGGCCA	1 cut(s)	263
MscI	TGGCCA	1 cut(s)	263
MseI	TTAA	1 cut(s)	507
Msp20I	TGGCCA	1 cut(s)	263
MspA1I	CMGCKG	1 cut(s)	284
MwoI	GCNNNNNNNGC	2 cut(s)	93, 104
NcoI	CCATGG	1 cut(s)	258
NdeII	GATC	6 cut(s)	171, 193, 202, 358, 423, 427
NlaIII	CATG	2 cut(s)	262, 304
NmuCI	GTSAC	1 cut(s)	188
NspI	RCATGY	1 cut(s)	304
PcsI	WCGNNNNNNNCGW	1 cut(s)	579
PflFI	GACNNNGTC	1 cut(s)	401
PkrI	GCNGC	1 cut(s)	100
Psp124BI	GAGCTC	1 cut(s)	53
PsuI	RGATCY	1 cut(s)	171
PsyI	GACNNNGTC	1 cut(s)	401
PvuII	CAGCTG	1 cut(s)	284
RsaI	GTAC	4 cut(s)	272, 289, 311, 353
RsaNI	GTAC	4 cut(s)	271, 288, 310, 352
SacI	GAGCTC	1 cut(s)	53
SaqAI	TTAA	1 cut(s)	507
SatI	GCNGC	1 cut(s)	99
Sau3AI	GATC	6 cut(s)	171, 193, 202, 358, 423, 427
ScaI	AGTACT	1 cut(s)	272
SduI	GDGCHC	1 cut(s)	53
SfaNI	GCATC	1 cut(s)	568
Sse9I	AATT	1 cut(s)	439
SsiI	CCGC	5 cut(s)	31, 99, 215, 414, 494
SstI	GAGCTC	1 cut(s)	53
StyI	CCWWGG	1 cut(s)	258
TaaI	ACNGT	2 cut(s)	160, 200
TaiI	ACGT	1 cut(s)	492
TaqI	TCGA	3 cut(s)	378, 426, 573
TasI	AATT	1 cut(s)	439
TatI	WGTACW	1 cut(s)	270
TauI	GCSGC	1 cut(s)	101
Tru1I	TTAA	1 cut(s)	507
Tru9I	TTAA	1 cut(s)	507
TscAI	CASTG	1 cut(s)	163
TseFI	GTSAC	1 cut(s)	188
Tsp45I	GTSAC	1 cut(s)	188
TspDTI	ATGAA	4 cut(s)	17, 114, 396, 493
TspRI	CASTG	1 cut(s)	163
Tth111I	GACNNNGTC	1 cut(s)	401
XagI	CCTNNNNNAGG	1 cut(s)	553
XapI	RAATTY	1 cut(s)	439
XceI	RCATGY	1 cut(s)	304
ZrmI	AGTACT	1 cut(s)	272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.