MD17G1003900.v1.1

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0010445
Physical Location & Seq
Reverse (-)
334888 .. 335583
696 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1003900.v1.1.491

Sequence Viewer

Length: 696 bp
ATGATGAAGAAGAAAGTATGTGCAGCATTAGTGAAGCAGATAATAGGTGCGGTAAGCTCAATGGGCAAGGGTAGAACCCTAGAGGCTCTCAAGAGAAAAACCAGGGCCATAAAGGCTCGAATCATCATATTCTCGTTGCTGAGCAACAACAAGTTGGTGATGATCACCTCCATCTCTCACAAGCTCCACGCTCTGTTTGGCCACTCTGACGACTCTGATCATCATGATGATCATCAGCAGCTGGAAGAAGAAGAAGATGATGACGATGATGGTATTAATCAAGATCATCAGTACCAGAACAGCAACAGTATTATTAATAATGATCATAGTATAATATTAATGTCGTTCCATGAATCCCAGTCCCACCTGCAGCAGCCGCGGCCGGTTCATGATAATACTATTATTAGTACTCCAACTGATCATCATGATCACGATTACATTACTACGTCGGAGGACCACGTCGTTGTCAATGATGCAGAAAAGTACCCAGATCTGACCCACTCGCTGTTCGACTCGGACGATGATCAGTTTGGATCTGTGATAGATATTGTCAAGAACTCAAAGCAAGAGGCCGGCCAGGAATTCAGTCTCGAAGAAGAAATAGACCACGTGGCAGACTTGTTCATAAGAAGGTTCCACCGCCAAATCAGAATTCAGAGGCAGCACTCCTTCAAGAGGCACCAGCAGCAGCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

232

Amino Acids

26.69

Weight (kDa)

5.73

Isoelectric Point (pI)

45.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF761 PF05553 198 - 229 2.9e-11 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 375
Acc36I ACCTGC 1 cut(s) 375
AccB1I GGYRCC 1 cut(s) 678
AccII CGCG 1 cut(s) 379
AciI CCGC 4 cut(s) 50, 377, 379, 640
AclWI GGATC 1 cut(s) 541
AcoI YGGCCR 3 cut(s) 199, 380, 574
AcsI RAATTY 2 cut(s) 581, 651
AcvI CACGTG 1 cut(s) 610
AfaI GTAC 3 cut(s) 293, 409, 485
AfiI CCNNNNNNNGG 1 cut(s) 675
AgsI TTSAA 1 cut(s) 673
AjiI CACGTC 1 cut(s) 460
AjnI CCWGG 2 cut(s) 101, 576
AjuI GAANNNNNNNTTGG 2 cut(s) 636, 668
AluBI AGCT 3 cut(s) 57, 184, 241
AluI AGCT 3 cut(s) 57, 184, 241
Alw26I GTCTC 1 cut(s) 593
AlwI GGATC 1 cut(s) 541
AlwNI CAGNNNCTG 1 cut(s) 241
AoxI GGCC 5 cut(s) 105, 199, 380, 570, 574
ApeKI GCWGC 7 cut(s) 23, 238, 370, 373, 661, 685, 688
ApoI RAATTY 2 cut(s) 581, 651
AseI ATTAAT 3 cut(s) 276, 315, 338
AspS9I GGNCC 2 cut(s) 105, 454
AsuHPI GGTGA 2 cut(s) 157, 169
AvaII GGWCC 1 cut(s) 454
BalI TGGCCA 1 cut(s) 201
BanI GGYRCC 1 cut(s) 678
BbrPI CACGTG 1 cut(s) 610
BbvI GCAGC 5 cut(s) 35, 250, 382, 385, 673
BccI CCATC 2 cut(s) 179, 263
BciT130I CCWGG 2 cut(s) 103, 578
BclI TGATCA 7 cut(s) 162, 217, 229, 322, 418, 427, 523
BcoDI GTCTC 1 cut(s) 593
BfaI CTAG 1 cut(s) 80
BfmI CTRYAG 1 cut(s) 368
BfuAI ACCTGC 1 cut(s) 375
BglI GCCNNNNNGGC 1 cut(s) 113
BglII AGATCT 1 cut(s) 490
BisI GCNGC 9 cut(s) 24, 239, 371, 374, 377, 380, 662, 686, 689
BlpI GCTNAGC 1 cut(s) 140
BlsI GCNGC 9 cut(s) 25, 240, 372, 375, 378, 381, 663, 687, 690
BmcAI AGTACT 1 cut(s) 409
Bme1390I CCNGG 2 cut(s) 103, 578
Bme18I GGWCC 1 cut(s) 454
BmgBI CACGTC 1 cut(s) 460
BmgT120I GGNCC 2 cut(s) 105, 454
BmiI GGNNCC 2 cut(s) 635, 680
BmrFI CCNGG 2 cut(s) 103, 578
BmrI ACTGGG 1 cut(s) 352
BmsI GCATC 1 cut(s) 463
BmuI ACTGGG 1 cut(s) 352
Bpu1102I GCTNAGC 1 cut(s) 140
BpuEI CTTGAG 1 cut(s) 74
BsaAI YACGTR 1 cut(s) 610
BsaBI GATNNNNATC 1 cut(s) 231
BsaJI CCNNGG 2 cut(s) 102, 377
Bsc4I CCNNNNNNNGG 1 cut(s) 675
Bse118I RCCGGY 2 cut(s) 382, 572
Bse1I ACTGG 1 cut(s) 358
Bse8I GATNNNNATC 1 cut(s) 231
BseBI CCWGG 2 cut(s) 103, 578
BseDI CCNNGG 2 cut(s) 102, 377
BseJI GATNNNNATC 1 cut(s) 231
BseLI CCNNNNNNNGG 1 cut(s) 675
BseMII CTCAG 1 cut(s) 131
BseNI ACTGG 1 cut(s) 358
BseX3I CGGCCG 1 cut(s) 380
BseXI GCAGC 5 cut(s) 35, 250, 382, 385, 673
BsgI GTGCAG 1 cut(s) 42
Bsh1236I CGCG 1 cut(s) 379
Bsh1285I CGRYCG 1 cut(s) 383
BshFI GGCC 5 cut(s) 107, 201, 382, 572, 576
BshNI GGYRCC 1 cut(s) 678
BsiEI CGRYCG 1 cut(s) 383
BsiSI CCGG 2 cut(s) 383, 573
BslFI GGGAC 1 cut(s) 346
BslI CCNNNNNNNGG 1 cut(s) 675
BsmAI GTCTC 1 cut(s) 593
BsmFI GGGAC 1 cut(s) 346
BsnI GGCC 5 cut(s) 107, 201, 382, 572, 576
Bsp1720I GCTNAGC 1 cut(s) 140
BspACI CCGC 4 cut(s) 50, 377, 379, 640
BspANI GGCC 5 cut(s) 107, 201, 382, 572, 576
BspCNI CTCAG 1 cut(s) 132
BspFNI CGCG 1 cut(s) 379
BspHI TCATGA 3 cut(s) 223, 388, 424
BspLI GGNNCC 2 cut(s) 635, 680
BspMAI CTGCAG 1 cut(s) 372
BspMI ACCTGC 1 cut(s) 375
BspPI GGATC 1 cut(s) 541
BspT107I GGYRCC 1 cut(s) 678
BsrFI RCCGGY 2 cut(s) 382, 572
BsrI ACTGG 1 cut(s) 358
BssAI RCCGGY 2 cut(s) 382, 572
BssECI CCNNGG 2 cut(s) 102, 377
Bst2UI CCWGG 2 cut(s) 103, 578
Bst4CI ACNGT 1 cut(s) 308
BstBAI YACGTR 1 cut(s) 610
BstC8I GCNNGC 1 cut(s) 574
BstDEI CTNAG 1 cut(s) 140
BstDSI CCRYGG 1 cut(s) 377
BstENI CCTNNNNNAGG 1 cut(s) 673
BstFNI CGCG 1 cut(s) 379
BstMAI GTCTC 1 cut(s) 593
BstMCI CGRYCG 1 cut(s) 383
BstMWI GCNNNNNNNGC 5 cut(s) 63, 113, 376, 379, 685
BstNI CCWGG 2 cut(s) 103, 578
BstSCI CCNGG 2 cut(s) 101, 576
BstSFI CTRYAG 1 cut(s) 368
BstUI CGCG 1 cut(s) 379
BstV1I GCAGC 5 cut(s) 35, 250, 382, 385, 673
BstX2I RGATCY 2 cut(s) 490, 533
BstYI RGATCY 2 cut(s) 490, 533
BstZI CGGCCG 1 cut(s) 380
BsuRI GGCC 5 cut(s) 107, 201, 382, 572, 576
BtgI CCRYGG 1 cut(s) 377
BtrI CACGTC 1 cut(s) 460
BveI ACCTGC 1 cut(s) 375
Cac8I GCNNGC 1 cut(s) 574
CaiI CAGNNNCTG 1 cut(s) 241
CciI TCATGA 3 cut(s) 223, 388, 424
Cfr10I RCCGGY 2 cut(s) 382, 572
Cfr13I GGNCC 2 cut(s) 105, 454
Cfr42I CCGCGG 1 cut(s) 380
Csp6I GTAC 3 cut(s) 292, 408, 484
CviAII CATG 4 cut(s) 224, 350, 389, 425
CviQI GTAC 3 cut(s) 292, 408, 484
DdeI CTNAG 1 cut(s) 140
EaeI YGGCCR 3 cut(s) 199, 380, 574
EagI CGGCCG 1 cut(s) 380
EclXI CGGCCG 1 cut(s) 380
Eco47I GGWCC 1 cut(s) 454
Eco52I CGGCCG 1 cut(s) 380
Eco72I CACGTG 1 cut(s) 610
EcoNI CCTNNNNNAGG 1 cut(s) 673
EcoRI GAATTC 2 cut(s) 581, 651
EcoRII CCWGG 2 cut(s) 101, 576
FaeI CATG 4 cut(s) 227, 353, 392, 428
FaqI GGGAC 1 cut(s) 346
FatI CATG 4 cut(s) 223, 349, 388, 424
FbaI TGATCA 7 cut(s) 162, 217, 229, 322, 418, 427, 523
Fnu4HI GCNGC 9 cut(s) 24, 239, 371, 374, 377, 380, 662, 686, 689
FseI GGCCGGCC 1 cut(s) 576
Fsp4HI GCNGC 9 cut(s) 24, 239, 371, 374, 377, 380, 662, 686, 689
FspBI CTAG 1 cut(s) 80
GluI GCNGC 9 cut(s) 24, 239, 371, 374, 377, 380, 662, 686, 689
HaeIII GGCC 5 cut(s) 107, 201, 382, 572, 576
HapII CCGG 2 cut(s) 383, 573
Hin1II CATG 4 cut(s) 227, 353, 392, 428
HinfI GANTC 4 cut(s) 120, 212, 353, 512
HpaII CCGG 2 cut(s) 383, 573
HphI GGTGA 2 cut(s) 157, 169
Hpy188I TCNGA 7 cut(s) 208, 217, 451, 495, 517, 650, 657
Hpy188III TCNNGA 9 cut(s) 91, 224, 281, 389, 425, 431, 553, 590, 673
Hpy99I CGWCG 2 cut(s) 451, 464
HpyAV CCTTC 2 cut(s) 624, 679
HpyCH4III ACNGT 1 cut(s) 308
HpyCH4IV ACGT 3 cut(s) 446, 459, 609
HpyCH4V TGCA 3 cut(s) 23, 370, 476
HpyF10VI GCNNNNNNNGC 5 cut(s) 63, 113, 376, 379, 685
HpyF3I CTNAG 1 cut(s) 140
HpySE526I ACGT 3 cut(s) 446, 459, 609
Hsp92II CATG 4 cut(s) 227, 353, 392, 428
KroI GCCGGC 1 cut(s) 572
KroNI GCCGGC 1 cut(s) 574
Ksp22I TGATCA 7 cut(s) 162, 217, 229, 322, 418, 427, 523
KspI CCGCGG 1 cut(s) 380
LmnI GCTCC 1 cut(s) 189
Lsp1109I GCAGC 5 cut(s) 35, 250, 382, 385, 673
LweI GCATC 1 cut(s) 463
MaeI CTAG 1 cut(s) 80
MaeII ACGT 3 cut(s) 446, 459, 609
MboII GAAGA 8 cut(s) 19, 22, 257, 260, 263, 266, 605, 608
MflI RGATCY 2 cut(s) 490, 533
MlsI TGGCCA 1 cut(s) 201
MluCI AATT 2 cut(s) 581, 651
MluNI TGGCCA 1 cut(s) 201
MlyI GAGTC 2 cut(s) 206, 506
MmeI TCCRAC 2 cut(s) 429, 437
MnlI CCTC 6 cut(s) 76, 178, 445, 562, 651, 669
Mox20I TGGCCA 1 cut(s) 201
MroNI GCCGGC 1 cut(s) 572
MscI TGGCCA 1 cut(s) 201
MseI TTAA 3 cut(s) 276, 315, 338
MslI CAYNNNNRTG 1 cut(s) 225
Msp20I TGGCCA 1 cut(s) 201
MspA1I CMGCKG 2 cut(s) 241, 379
MspI CCGG 2 cut(s) 383, 573
MspR9I CCNGG 2 cut(s) 103, 578
MvaI CCWGG 2 cut(s) 103, 578
MvnI CGCG 1 cut(s) 379
MwoI GCNNNNNNNGC 5 cut(s) 63, 113, 376, 379, 685
NaeI GCCGGC 1 cut(s) 574
NgoMIV GCCGGC 1 cut(s) 572
NlaIII CATG 4 cut(s) 227, 353, 392, 428
NlaIV GGNNCC 2 cut(s) 635, 680
PagI TCATGA 3 cut(s) 223, 388, 424
PaqCI CACCTGC 1 cut(s) 375
PcsI WCGNNNNNNNCGW 1 cut(s) 516
PdiI GCCGGC 1 cut(s) 574
PfeI GAWTC 2 cut(s) 120, 353
PflFI GACNNNGTC 1 cut(s) 458
PkrI GCNGC 9 cut(s) 25, 240, 372, 375, 378, 381, 663, 687, 690
PleI GAGTC 2 cut(s) 206, 506
PmaCI CACGTG 1 cut(s) 610
PmlI CACGTG 1 cut(s) 610
PpsI GAGTC 2 cut(s) 206, 506
Ppu21I YACGTR 1 cut(s) 610
PshBI ATTAAT 3 cut(s) 276, 315, 338
Psp6I CCWGG 2 cut(s) 101, 576
PspCI CACGTG 1 cut(s) 610
PspGI CCWGG 2 cut(s) 101, 576
PspN4I GGNNCC 2 cut(s) 635, 680
PspPI GGNCC 2 cut(s) 105, 454
PstI CTGCAG 1 cut(s) 372
PstNI CAGNNNCTG 1 cut(s) 241
PsuI RGATCY 2 cut(s) 490, 533
PsyI GACNNNGTC 1 cut(s) 458
PvuII CAGCTG 1 cut(s) 241
RigI GGCCGGCC 1 cut(s) 576
RsaI GTAC 3 cut(s) 293, 409, 485
RsaNI GTAC 3 cut(s) 292, 408, 484
RseI CAYNNNNRTG 1 cut(s) 225
SacII CCGCGG 1 cut(s) 380
SaqAI TTAA 3 cut(s) 276, 315, 338
SatI GCNGC 9 cut(s) 24, 239, 371, 374, 377, 380, 662, 686, 689
Sau96I GGNCC 2 cut(s) 105, 454
ScaI AGTACT 1 cut(s) 409
SchI GAGTC 2 cut(s) 206, 506
ScrFI CCNGG 2 cut(s) 103, 578
SfaNI GCATC 1 cut(s) 463
SfcI CTRYAG 1 cut(s) 368
Sfr303I CCGCGG 1 cut(s) 380
SgrBI CCGCGG 1 cut(s) 380
SinI GGWCC 1 cut(s) 454
SmiMI CAYNNNNRTG 1 cut(s) 225
SmlI CTYRAG 1 cut(s) 89
SmoI CTYRAG 1 cut(s) 89
Sse9I AATT 2 cut(s) 581, 651
SsiI CCGC 4 cut(s) 50, 377, 379, 640
SspI AATATT 1 cut(s) 336
SspMI CTAG 1 cut(s) 80
StyD4I CCNGG 2 cut(s) 101, 576
TaaI ACNGT 1 cut(s) 308
TaiI ACGT 3 cut(s) 449, 462, 612
TaqI TCGA 3 cut(s) 118, 510, 591
TasI AATT 2 cut(s) 581, 651
TatI WGTACW 1 cut(s) 407
TauI GCSGC 2 cut(s) 379, 382
TfiI GAWTC 2 cut(s) 120, 353
Tru1I TTAA 3 cut(s) 276, 315, 338
Tru9I TTAA 3 cut(s) 276, 315, 338
TseI GCWGC 7 cut(s) 23, 238, 370, 373, 661, 685, 688
TspDTI ATGAA 4 cut(s) 20, 366, 377, 613
Tth111I GACNNNGTC 1 cut(s) 458
VpaK11BI GGWCC 1 cut(s) 454
VspI ATTAAT 3 cut(s) 276, 315, 338
XagI CCTNNNNNAGG 1 cut(s) 673
XapI RAATTY 2 cut(s) 581, 651
XcmI CCANNNNNNNNNTGG 1 cut(s) 194
XspI CTAG 1 cut(s) 80
ZrmI AGTACT 1 cut(s) 409
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.