Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009235

Physical Location & Seq

Genomic Coordinates Reverse (-)

19462516 .. 19464971

Gene Structure 2456 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G48020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGGAGTTACCCGTCGTAGATCTGTCTAGTTACCTCGACTTCTCCGGTGATGAATTAGGATCCGATCTACTCGAATCATGCCGACAAGTGAGTCGGATCCTAAAAGAAACCGGAGCTCTCATTGTTAAAGATCCTCGATGTTGCGCTCAAGACAACGATCGATTCATTGATATGATGGAAAATTATTTCGAAAAACCTGATGATTTCAAACGATTGCAACAAAGACCTAATCTTCACTATCAGGTTGGTGCGACGCCGGAGGGAGTTGAAGTGCCGAGGAGTTTGGTTGATGAAGAGATGCAAGAAAAGTTCAATACAATGCCTAATGAATACAAACCACATATTCCGAAAGGACCAGATCATAAGTGGAGATATATGTGGAGAGTTGGTCCTAGGCCATCTAACACACGGTTTAAGGAGCTTAATTCTGAGCCTGTTGTACCGGAAGGTTTTCCGGGGTGGGAAGAAGTAATGGACTCATGGGGTTACAAGATGATATCCGCGGTTGAGGTTGTTGCTGAAATGGCAGCAATTGGGTTTGGTTTGCCTAAGGATGCATTTACATCACTCATGAAGCAGGGTCCTCATCTTCTTGCTCCAACGGGAAGTGATCTTAACTGTTACAACGAGGAAGGGACGATATTTGCAGGATATCACTATGATCTTAATTTTCTAACGATTCATGGAAGAAGTAGATTCCCTGGTCTATATATTTGGTTAAGGAATGGAGAGAAGGTTGCGGTTAAAGTTCCGGTAGGCTGTCTCTTGATTCAAGCTGGAAAGCAGATAGAATGGTTAACTGCTGGAGAATGCATTGCTGGAATGCATGAAGTGGTTGTTACGAGCAAGACGAAGGATGCCATCACATTAGCAAAGGAACAAAACCGAAGCCTATGGAGAGTTTCCTCGACTTTGTTTGCCCACATTGCCTCTGATGCGGAGCTGAAACCTTTGGGACATTTCGCAGAATCATCTTTGGCAAGTAAATATCCGGCGATACCCGCAGGAGAGTATGTTGAACAAGAACTCTCGGTCATCAATCTCAAAGGAAATAAGGGATCTTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DIOX_N

Protein Analysis

355

Amino Acids

39.85

Weight (kDa)

5.4

Isoelectric Point (pI)

45.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009235)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48020
fragaria_vesca	FvH4_7g00610 FvH4_7g00610
malus_domestica	MD02G1316300.v1.1 MD07G1005600.v1.1
prunus_persica	Prupe.2G008000_v2.0.a1 Prupe.2G008000_v2.0.a1 Prupe.2G008200_v2.0.a1 Prupe.2G008200_v2.0.a1
pyrus_communis	pycom02g26490 pycom07g00470
rosa_chinensis	RchiOBHm_Chr1g0314801
rosa_laevigata	RLG00000030763
rosa_multiflora	Rmu_sc0002833.1_g000039 Rmu_sc0010489.1_g000016
rosa_roxburghii	Rroxscaffold_4G00331870
rosa_rugosa	Rorug01G0001900
rosa_samantha	Rh1AG012800 Rh1BG004400 Rh1CG011300 Rh1DG006100
rosa_wichuraiana	Rw1G000540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	90
AccII	CGCG	1 cut(s)	503
AciI	CCGC	5 cut(s)	501, 503, 740, 938, 1002
AclWI	GGATC	6 cut(s)	54, 67, 91, 104, 125, 1066
AcyI	GRCGYC	1 cut(s)	254
AfaI	GTAC	1 cut(s)	441
AgsI	TTSAA	5 cut(s)	208, 269, 313, 773, 1019
AjnI	CCWGG	1 cut(s)	700
AluBI	AGCT	4 cut(s)	116, 421, 776, 943
AluI	AGCT	4 cut(s)	116, 421, 776, 943
Alw21I	GWGCWC	1 cut(s)	118
Alw26I	GTCTC	1 cut(s)	767
AlwI	GGATC	6 cut(s)	54, 67, 91, 104, 125, 1066
AoxI	GGCC	1 cut(s)	395
ApeKI	GCWGC	1 cut(s)	527
Asp700I	GAANNNNTTC	1 cut(s)	450
AspA2I	CCTAGG	1 cut(s)	392
AspLEI	GCGC	1 cut(s)	146
AspS9I	GGNCC	3 cut(s)	353, 389, 581
AsuC2I	CCSGG	1 cut(s)	456
AsuHPI	GGTGA	1 cut(s)	59
AsuII	TTCGAA	1 cut(s)	189
AvaII	GGWCC	3 cut(s)	353, 389, 581
AvrII	CCTAGG	1 cut(s)	392
AxyI	CCTNAGG	1 cut(s)	549
BamHI	GGATCC	2 cut(s)	59, 96
BanII	GRGCYC	1 cut(s)	118
Bbv12I	GWGCWC	1 cut(s)	118
BbvI	GCAGC	1 cut(s)	539
BccI	CCATC	3 cut(s)	169, 406, 869
BciT130I	CCWGG	1 cut(s)	702
BcnI	CCSGG	1 cut(s)	456
BcoDI	GTCTC	1 cut(s)	767
BfaI	CTAG	2 cut(s)	27, 393
BglII	AGATCT	1 cut(s)	19
BisI	GCNGC	1 cut(s)	528
BlnI	CCTAGG	1 cut(s)	392
BlsI	GCNGC	1 cut(s)	529
Bme1390I	CCNGG	2 cut(s)	456, 702
Bme18I	GGWCC	3 cut(s)	353, 389, 581
BmgT120I	GGNCC	3 cut(s)	353, 389, 581
BmiI	GGNNCC	3 cut(s)	61, 98, 582
BmrFI	CCNGG	2 cut(s)	456, 702
BmsI	GCATC	4 cut(s)	288, 544, 847, 925
BpmI	CTGGAG	1 cut(s)	825
Bpu14I	TTCGAA	1 cut(s)	189
BpuEI	CTTGAG	1 cut(s)	132
BpuMI	CCSGG	1 cut(s)	456
Bsa29I	ATCGAT	1 cut(s)	160
BsaHI	GRCGYC	1 cut(s)	254
BsaJI	CCNNGG	5 cut(s)	275, 392, 455, 501, 700
BsaWI	WCCGGW	4 cut(s)	44, 110, 442, 751
BsaXI	ACNNNNNCTCC	8 cut(s)	255, 285, 373, 403, 720, 750, 999, 1029
Bse21I	CCTNAGG	1 cut(s)	549
Bse3DI	GCAATG	2 cut(s)	813, 924
BseBI	CCWGG	1 cut(s)	702
BseCI	ATCGAT	1 cut(s)	160
BseDI	CCNNGG	5 cut(s)	275, 392, 455, 501, 700
BseGI	GGATG	2 cut(s)	559, 862
BseMI	GCAATG	2 cut(s)	813, 924
BseMII	CTCAG	1 cut(s)	420
BseRI	GAGGAG	1 cut(s)	292
BseXI	GCAGC	1 cut(s)	539
Bsh1236I	CGCG	1 cut(s)	503
Bsh1285I	CGRYCG	1 cut(s)	160
BshFI	GGCC	1 cut(s)	397
BshVI	ATCGAT	1 cut(s)	160
BsiEI	CGRYCG	1 cut(s)	160
BsiHKAI	GWGCWC	1 cut(s)	118
BsiSI	CCGG	7 cut(s)	45, 111, 257, 443, 455, 752, 992
BslFI	GGGAC	2 cut(s)	649, 969
BsmAI	GTCTC	1 cut(s)	767
BsmFI	GGGAC	2 cut(s)	649, 969
BsmI	GAATGC	2 cut(s)	815, 828
BsnI	GGCC	1 cut(s)	397
Bsp119I	TTCGAA	1 cut(s)	189
Bsp1286I	GDGCHC	1 cut(s)	118
BspACI	CCGC	5 cut(s)	501, 503, 740, 938, 1002
BspANI	GGCC	1 cut(s)	397
BspCNI	CTCAG	1 cut(s)	421
BspDI	ATCGAT	1 cut(s)	160
BspFNI	CGCG	1 cut(s)	503
BspHI	TCATGA	1 cut(s)	570
BspLI	GGNNCC	3 cut(s)	61, 98, 582
BspPI	GGATC	6 cut(s)	54, 67, 91, 104, 125, 1066
BspT104I	TTCGAA	1 cut(s)	189
BsrDI	GCAATG	2 cut(s)	813, 924
BssECI	CCNNGG	5 cut(s)	275, 392, 455, 501, 700
BssNI	GRCGYC	1 cut(s)	254
BssT1I	CCWWGG	1 cut(s)	392
Bst2UI	CCWGG	1 cut(s)	702
Bst4CI	ACNGT	2 cut(s)	411, 620
Bst6I	CTCTTC	1 cut(s)	288
BstACI	GRCGYC	1 cut(s)	254
BstBI	TTCGAA	1 cut(s)	189
BstDEI	CTNAG	2 cut(s)	429, 549
BstDSI	CCRYGG	1 cut(s)	501
BstF5I	GGATG	2 cut(s)	559, 862
BstFNI	CGCG	1 cut(s)	503
BstHHI	GCGC	1 cut(s)	146
BstMAI	GTCTC	1 cut(s)	767
BstMCI	CGRYCG	1 cut(s)	160
BstMWI	GCNNNNNNNGC	4 cut(s)	524, 926, 935, 1001
BstNI	CCWGG	1 cut(s)	702
BstSCI	CCNGG	2 cut(s)	454, 700
BstUI	CGCG	1 cut(s)	503
BstV1I	GCAGC	1 cut(s)	539
BstX2I	RGATCY	5 cut(s)	19, 59, 96, 130, 1058
BstYI	RGATCY	5 cut(s)	19, 59, 96, 130, 1058
Bsu15I	ATCGAT	1 cut(s)	160
Bsu36I	CCTNAGG	1 cut(s)	549
BsuRI	GGCC	1 cut(s)	397
BsuTUI	ATCGAT	1 cut(s)	160
BtgI	CCRYGG	1 cut(s)	501
BtsCI	GGATG	2 cut(s)	559, 862
CciI	TCATGA	1 cut(s)	570
CfoI	GCGC	1 cut(s)	146
Cfr13I	GGNCC	3 cut(s)	353, 389, 581
Cfr42I	CCGCGG	1 cut(s)	504
ClaI	ATCGAT	1 cut(s)	160
CseI	GACGC	1 cut(s)	262
Csp6I	GTAC	1 cut(s)	440
CviAII	CATG	5 cut(s)	78, 480, 571, 683, 827
CviJI	RGCY	8 cut(s)	116, 397, 421, 433, 759, 776, 891, 943
CviKI_1	RGCY	8 cut(s)	116, 397, 421, 433, 759, 776, 891, 943
CviQI	GTAC	1 cut(s)	440
DdeI	CTNAG	2 cut(s)	429, 549
DrdI	GACNNNNNNGTC	1 cut(s)	90
DseDI	GACNNNNNNGTC	1 cut(s)	90
Eam1104I	CTCTTC	1 cut(s)	288
EarI	CTCTTC	1 cut(s)	288
Ecl136II	GAGCTC	1 cut(s)	116
Eco130I	CCWWGG	1 cut(s)	392
Eco24I	GRGCYC	1 cut(s)	118
Eco32I	GATATC	2 cut(s)	498, 653
Eco47I	GGWCC	3 cut(s)	353, 389, 581
Eco53kI	GAGCTC	1 cut(s)	116
Eco81I	CCTNAGG	1 cut(s)	549
EcoICRI	GAGCTC	1 cut(s)	116
EcoO109I	RGGNCCY	1 cut(s)	581
EcoRII	CCWGG	1 cut(s)	700
EcoRV	GATATC	2 cut(s)	498, 653
EcoT14I	CCWWGG	1 cut(s)	392
EcoT22I	ATGCAT	3 cut(s)	559, 815, 828
EcoT38I	GRGCYC	1 cut(s)	118
ErhI	CCWWGG	1 cut(s)	392
FaeI	CATG	5 cut(s)	81, 483, 574, 686, 830
FaqI	GGGAC	2 cut(s)	649, 969
FatI	CATG	5 cut(s)	77, 479, 570, 682, 826
FauI	CCCGC	1 cut(s)	1009
Fnu4HI	GCNGC	1 cut(s)	528
FokI	GGATG	2 cut(s)	566, 869
FriOI	GRGCYC	1 cut(s)	118
Fsp4HI	GCNGC	1 cut(s)	528
FspBI	CTAG	2 cut(s)	27, 393
GlaI	GCGC	1 cut(s)	145
GluI	GCNGC	1 cut(s)	528
GsuI	CTGGAG	1 cut(s)	825
HaeIII	GGCC	1 cut(s)	397
HapII	CCGG	7 cut(s)	45, 111, 257, 443, 455, 752, 992
HgaI	GACGC	1 cut(s)	262
HhaI	GCGC	1 cut(s)	146
Hin1I	GRCGYC	1 cut(s)	254
Hin1II	CATG	5 cut(s)	81, 483, 574, 686, 830
Hin6I	GCGC	1 cut(s)	144
HinP1I	GCGC	1 cut(s)	144
HincII	GTYRAC	1 cut(s)	798
HindII	GTYRAC	1 cut(s)	798
HinfI	GANTC	8 cut(s)	74, 91, 162, 476, 679, 696, 769, 968
HpaI	GTTAAC	1 cut(s)	798
HpaII	CCGG	7 cut(s)	45, 111, 257, 443, 455, 752, 992
HphI	GGTGA	1 cut(s)	59
Hpy166II	GTNNAC	1 cut(s)	798
Hpy188I	TCNGA	5 cut(s)	64, 96, 348, 430, 934
Hpy188III	TCNNGA	3 cut(s)	149, 571, 766
Hpy8I	GTNNAC	1 cut(s)	798
Hpy99I	CGWCG	2 cut(s)	17, 256
HpyAV	CCTTC	4 cut(s)	440, 626, 727, 847
HpyCH4III	ACNGT	2 cut(s)	411, 620
HpyCH4V	TGCA	6 cut(s)	217, 301, 557, 647, 813, 826
HpyF10VI	GCNNNNNNNGC	4 cut(s)	524, 926, 935, 1001
HpyF3I	CTNAG	2 cut(s)	429, 549
Hsp92I	GRCGYC	1 cut(s)	254
Hsp92II	CATG	5 cut(s)	81, 483, 574, 686, 830
HspAI	GCGC	1 cut(s)	144
KspAI	GTTAAC	1 cut(s)	798
KspI	CCGCGG	1 cut(s)	504
LmnI	GCTCC	4 cut(s)	113, 418, 601, 940
Lsp1109I	GCAGC	1 cut(s)	539
LweI	GCATC	4 cut(s)	288, 544, 847, 925
MaeI	CTAG	2 cut(s)	27, 393
MaeIII	GTNAC	5 cut(s)	6, 29, 485, 620, 838
MboII	GAAGA	6 cut(s)	224, 305, 476, 581, 699, 1053
MfeI	CAATTG	1 cut(s)	531
MflI	RGATCY	5 cut(s)	19, 59, 96, 130, 1058
MhlI	GDGCHC	1 cut(s)	118
MluCI	AATT	5 cut(s)	53, 181, 424, 531, 667
MlyI	GAGTC	2 cut(s)	100, 470
MmeI	TCCRAC	2 cut(s)	74, 623
MnlI	CCTC	9 cut(s)	44, 144, 253, 270, 502, 594, 622, 916, 940
Mph1103I	ATGCAT	3 cut(s)	559, 815, 828
MroXI	GAANNNNTTC	1 cut(s)	450
MseI	TTAA	8 cut(s)	126, 414, 423, 615, 666, 719, 744, 797
MslI	CAYNNNNRTG	1 cut(s)	170
MspA1I	CMGCKG	1 cut(s)	503
MspI	CCGG	7 cut(s)	45, 111, 257, 443, 455, 752, 992
MspR9I	CCNGG	2 cut(s)	456, 702
MunI	CAATTG	1 cut(s)	531
Mva1269I	GAATGC	2 cut(s)	815, 828
MvaI	CCWGG	1 cut(s)	702
MvnI	CGCG	1 cut(s)	503
MwoI	GCNNNNNNNGC	4 cut(s)	524, 926, 935, 1001
NciI	CCSGG	1 cut(s)	456
NlaIII	CATG	5 cut(s)	81, 483, 574, 686, 830
NlaIV	GGNNCC	3 cut(s)	61, 98, 582
NmeAIII	GCCGAG	1 cut(s)	300
NsiI	ATGCAT	3 cut(s)	559, 815, 828
NspV	TTCGAA	1 cut(s)	189
PagI	TCATGA	1 cut(s)	570
PcsI	WCGNNNNNNNCGW	1 cut(s)	848
PctI	GAATGC	2 cut(s)	815, 828
PdmI	GAANNNNTTC	1 cut(s)	450
PfeI	GAWTC	6 cut(s)	74, 162, 679, 696, 769, 968
PkrI	GCNGC	1 cut(s)	529
Ple19I	CGATCG	1 cut(s)	160
PleI	GAGTC	2 cut(s)	99, 470
PpsI	GAGTC	2 cut(s)	99, 470
PpuMI	RGGWCCY	1 cut(s)	581
Psp124BI	GAGCTC	1 cut(s)	118
Psp5II	RGGWCCY	1 cut(s)	581
Psp6I	CCWGG	1 cut(s)	700
PspGI	CCWGG	1 cut(s)	700
PspN4I	GGNNCC	3 cut(s)	61, 98, 582
PspPI	GGNCC	3 cut(s)	353, 389, 581
PspPPI	RGGWCCY	1 cut(s)	581
PsuI	RGATCY	5 cut(s)	19, 59, 96, 130, 1058
PvuI	CGATCG	1 cut(s)	160
RsaI	GTAC	1 cut(s)	441
RsaNI	GTAC	1 cut(s)	440
RseI	CAYNNNNRTG	1 cut(s)	170
SacI	GAGCTC	1 cut(s)	118
SacII	CCGCGG	1 cut(s)	504
SaqAI	TTAA	8 cut(s)	126, 414, 423, 615, 666, 719, 744, 797
SatI	GCNGC	1 cut(s)	528
Sau96I	GGNCC	3 cut(s)	353, 389, 581
SchI	GAGTC	2 cut(s)	100, 470
ScrFI	CCNGG	2 cut(s)	456, 702
SduI	GDGCHC	1 cut(s)	118
SfaNI	GCATC	4 cut(s)	288, 544, 847, 925
Sfr303I	CCGCGG	1 cut(s)	504
SfuI	TTCGAA	1 cut(s)	189
SgrBI	CCGCGG	1 cut(s)	504
SinI	GGWCC	3 cut(s)	353, 389, 581
SmiMI	CAYNNNNRTG	1 cut(s)	170
SmlI	CTYRAG	1 cut(s)	147
SmoI	CTYRAG	1 cut(s)	147
Sse9I	AATT	5 cut(s)	53, 181, 424, 531, 667
SsiI	CCGC	5 cut(s)	501, 503, 740, 938, 1002
SspMI	CTAG	2 cut(s)	27, 393
SstI	GAGCTC	1 cut(s)	118
StyD4I	CCNGG	2 cut(s)	454, 700
StyI	CCWWGG	1 cut(s)	392
TaaI	ACNGT	2 cut(s)	411, 620
TaqI	TCGA	6 cut(s)	36, 72, 136, 160, 189, 908
TaqII	GACCGA	1 cut(s)	1021
TasI	AATT	5 cut(s)	53, 181, 424, 531, 667
TfiI	GAWTC	6 cut(s)	74, 162, 679, 696, 769, 968
Tru1I	TTAA	8 cut(s)	126, 414, 423, 615, 666, 719, 744, 797
Tru9I	TTAA	8 cut(s)	126, 414, 423, 615, 666, 719, 744, 797
TseI	GCWGC	1 cut(s)	527
TspDTI	ATGAA	8 cut(s)	66, 154, 306, 342, 587, 671, 843, 1053
VpaK11BI	GGWCC	3 cut(s)	353, 389, 581
XcmI	CCANNNNNNNNNTGG	1 cut(s)	363
XmaJI	CCTAGG	1 cut(s)	392
XmnI	GAANNNNTTC	1 cut(s)	450
XspI	CTAG	2 cut(s)	27, 393
Zsp2I	ATGCAT	3 cut(s)	559, 815, 828

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.