Rh1DG006100
ERF Family

and Fe(II)-dependent oxygenase superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0009235
Physical Location & Seq
Forward (+)
959409 .. 961685
2277 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG006100.1

Sequence Viewer

Length: 1059 bp
ATGGAGCTGCCGGTGATAGATCTGAGCCCCTACTTGGAATCGGGATCGGAGGGCCAATTGAAGGAGCTGTGCGGCGAGGTCAGTCGGAGTCTCAGAGAAACCGGAGCTCTCTTAGTCAAGGACCCTCGATGTACCGCCCAGGACAACGATCGCTTCCTCGATATGATGGAGAACTACTTCGCCTCTTCTTCCGACTTCAAGCGACTCCACGAGAGGCCCCAATTGCATTACCAGGTCGGCGTGACTCCCGAGGGCGTGGAAGTGCCCAGAAGCCTGGTTGACGAGGAAATGCAGGAGAAATTGAAGCAAATGCCGAAACAAGTGCAGCCTTCCACTCCCAAGGGCCCTGATTGCAAATGGCGATACATGTGGAGAGTCGGTCCCAGACCCTCCAAAACCCGCTTTCAGGAACTTAATGCGGAGCCAGTTGTGCCTGAGGGTTTTCCTGAGTGGAAAGAAACCATGGATTCATGGGGGTACAAGATGATTTCGGCAATTGAGGCTGTTGCTGAAATGGCTGCCATTGGATTTGGTTTGCCAAAGGATGCATTCACTTCCCTTATGCAGCGGGGACCACACCTTCTAGCTCCAACTGGAAGTGACCTTCAGCGTTATGGCCAAGAGGGTACTGTCTTTGCAGGATATCACTATGACCTGAACTTTTTAACTATTCATGGCAGAAGTAGATTCCCAGGGCTTAATATCTGGCTAAGAAATGGGCAAAAAGTTGAAGTGAAGGTTCCTGTCGGATGTCTGCTTATTCAGACCGGAAAGCAGATAGAATGGTTAACTGGTGGAGATTGCATAGCTGGAATGCATGAAGTTGTTGTAACAGACAGGACAACTGATGCAATCAAACTAGCAAGGGAGCAAAATCGCATCTTATGGAGAGTATCTTCTACTTTGTTTGGCCACATAGCATCTGATGCTGTCTTGAAGCCCTTAGGCCACTTTGCCGATTCCCCACTTGCGAGTAAATATCCGCCCATTTATGCAGGGGAGTTTGTTGAACAAGAGCTTTCCGTAATCAATCTCAAAGGAAACAAAGGACAACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DIOX_N

Protein Analysis

352

Amino Acids

39.53

Weight (kDa)

5.97

Isoelectric Point (pI)

48.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 6 cut(s) 72, 135, 400, 419, 568, 983
AclWI GGATC 1 cut(s) 52
AcoI YGGCCR 2 cut(s) 616, 910
AcuI CTGAAG 1 cut(s) 590
AfaI GTAC 3 cut(s) 133, 479, 628
AfiI CCNNNNNNNGG 3 cut(s) 34, 61, 406
AflIII ACRYGT 1 cut(s) 366
AgsI TTSAA 6 cut(s) 61, 199, 304, 731, 937, 1010
AjnI CCWGG 4 cut(s) 138, 231, 273, 691
AluBI AGCT 6 cut(s) 7, 67, 107, 587, 809, 1018
AluI AGCT 6 cut(s) 7, 67, 107, 587, 809, 1018
Alw21I GWGCWC 1 cut(s) 109
Alw26I GTCTC 1 cut(s) 95
AlwI GGATC 1 cut(s) 52
Ama87I CYCGRG 1 cut(s) 248
AoxI GGCC 6 cut(s) 52, 215, 343, 616, 910, 946
ApaI GGGCCC 1 cut(s) 347
ApeKI GCWGC 4 cut(s) 7, 325, 518, 565
Asp700I GAANNNNTTC 1 cut(s) 176
AspS9I GGNCC 7 cut(s) 52, 121, 216, 343, 344, 380, 572
AsuHPI GGTGA 1 cut(s) 25
AvaI CYCGRG 1 cut(s) 248
AvaII GGWCC 3 cut(s) 121, 380, 572
AxyI CCTNAGG 2 cut(s) 435, 943
BaeGI GKGCMC 2 cut(s) 267, 347
BalI TGGCCA 2 cut(s) 618, 912
BanII GRGCYC 3 cut(s) 29, 109, 347
BauI CACGAG 1 cut(s) 209
Bbv12I GWGCWC 1 cut(s) 109
BbvI GCAGC 3 cut(s) 337, 505, 577
BccI CCATC 1 cut(s) 160
BcgI CGANNNNNNTGC 2 cut(s) 304, 338
BciT130I CCWGG 4 cut(s) 140, 233, 275, 693
BcoDI GTCTC 1 cut(s) 95
BfaI CTAG 2 cut(s) 584, 860
BglII AGATCT 1 cut(s) 19
BisI GCNGC 5 cut(s) 8, 73, 326, 519, 566
BlsI GCNGC 5 cut(s) 9, 74, 327, 520, 567
Bme1390I CCNGG 4 cut(s) 140, 233, 275, 693
Bme18I GGWCC 3 cut(s) 121, 380, 572
BmeT110I CYCGRG 1 cut(s) 248
BmgT120I GGNCC 7 cut(s) 52, 121, 216, 343, 344, 380, 572
BmiI GGNNCC 7 cut(s) 123, 218, 345, 382, 423, 573, 741
BmrFI CCNGG 4 cut(s) 140, 233, 275, 693
BmsI GCATC 5 cut(s) 535, 838, 888, 916, 929
BsaJI CCNNGG 6 cut(s) 138, 249, 339, 462, 691, 692
BsaWI WCCGGW 2 cut(s) 101, 767
BsaXI ACNNNNNCTCC 2 cut(s) 364, 394
Bsc4I CCNNNNNNNGG 3 cut(s) 34, 61, 406
Bse118I RCCGGY 1 cut(s) 10
Bse1I ACTGG 3 cut(s) 425, 598, 796
Bse21I CCTNAGG 2 cut(s) 435, 943
BseBI CCWGG 4 cut(s) 140, 233, 275, 693
BseDI CCNNGG 6 cut(s) 138, 249, 339, 462, 691, 692
BseGI GGATG 2 cut(s) 550, 755
BseLI CCNNNNNNNGG 3 cut(s) 34, 61, 406
BseMII CTCAG 4 cut(s) 14, 106, 426, 438
BseNI ACTGG 3 cut(s) 425, 598, 796
BseSI GKGCMC 2 cut(s) 267, 347
BseXI GCAGC 3 cut(s) 337, 505, 577
BsgI GTGCAG 1 cut(s) 344
Bsh1285I CGRYCG 1 cut(s) 151
BshFI GGCC 6 cut(s) 54, 217, 345, 618, 912, 948
BsiEI CGRYCG 1 cut(s) 151
BsiHKAI GWGCWC 1 cut(s) 109
BsiHKCI CYCGRG 1 cut(s) 248
BsiSI CCGG 3 cut(s) 11, 102, 768
BslFI GGGAC 2 cut(s) 366, 585
BslI CCNNNNNNNGG 3 cut(s) 34, 61, 406
BsmAI GTCTC 1 cut(s) 95
BsmFI GGGAC 2 cut(s) 366, 585
BsmI GAATGC 2 cut(s) 548, 819
BsnI GGCC 6 cut(s) 54, 217, 345, 618, 912, 948
BsoBI CYCGRG 1 cut(s) 248
Bsp120I GGGCCC 1 cut(s) 343
Bsp1286I GDGCHC 4 cut(s) 29, 109, 267, 347
Bsp143I GATC 3 cut(s) 19, 44, 148
Bsp19I CCATGG 1 cut(s) 462
BspACI CCGC 6 cut(s) 72, 135, 400, 419, 568, 983
BspANI GGCC 6 cut(s) 54, 217, 345, 618, 912, 948
BspCNI CTCAG 4 cut(s) 15, 105, 427, 439
BspLI GGNNCC 7 cut(s) 123, 218, 345, 382, 423, 573, 741
BspPI GGATC 1 cut(s) 52
BsrFI RCCGGY 1 cut(s) 10
BsrI ACTGG 3 cut(s) 425, 598, 796
BssAI RCCGGY 1 cut(s) 10
BssECI CCNNGG 6 cut(s) 138, 249, 339, 462, 691, 692
BssMI GATC 3 cut(s) 19, 44, 148
BssSI CACGAG 1 cut(s) 209
BssT1I CCWWGG 2 cut(s) 339, 462
Bst2BI CACGAG 1 cut(s) 209
Bst2UI CCWGG 4 cut(s) 140, 233, 275, 693
Bst4CI ACNGT 1 cut(s) 631
Bst6I CTCTTC 1 cut(s) 190
BstAPI GCANNNNNTGC 1 cut(s) 926
BstDEI CTNAG 7 cut(s) 23, 92, 112, 435, 447, 710, 943
BstDSI CCRYGG 1 cut(s) 462
BstF5I GGATG 2 cut(s) 550, 755
BstKTI GATC 3 cut(s) 22, 47, 151
BstMAI GTCTC 1 cut(s) 95
BstMBI GATC 3 cut(s) 19, 44, 148
BstMCI CGRYCG 1 cut(s) 151
BstMWI GCNNNNNNNGC 6 cut(s) 223, 351, 430, 500, 515, 926
BstNI CCWGG 4 cut(s) 140, 233, 275, 693
BstNSI RCATGY 1 cut(s) 370
BstSCI CCNGG 4 cut(s) 138, 231, 273, 691
BstSLI GKGCMC 2 cut(s) 267, 347
BstV1I GCAGC 3 cut(s) 337, 505, 577
BstX2I RGATCY 1 cut(s) 19
BstXI CCANNNNNNTGG 1 cut(s) 274
BstYI RGATCY 1 cut(s) 19
Bsu36I CCTNAGG 2 cut(s) 435, 943
BsuRI GGCC 6 cut(s) 54, 217, 345, 618, 912, 948
BtgI CCRYGG 1 cut(s) 462
BtsCI GGATG 2 cut(s) 550, 755
Cfr10I RCCGGY 1 cut(s) 10
Cfr13I GGNCC 7 cut(s) 52, 121, 216, 343, 344, 380, 572
CsiI ACCWGGT 1 cut(s) 231
Csp6I GTAC 3 cut(s) 132, 478, 627
CviAII CATG 5 cut(s) 367, 463, 471, 674, 818
CviQI GTAC 3 cut(s) 132, 478, 627
DdeI CTNAG 7 cut(s) 23, 92, 112, 435, 447, 710, 943
DpnI GATC 3 cut(s) 21, 46, 150
DpnII GATC 3 cut(s) 19, 44, 148
EaeI YGGCCR 2 cut(s) 616, 910
Eam1104I CTCTTC 1 cut(s) 190
EarI CTCTTC 1 cut(s) 190
EciI GGCGGA 1 cut(s) 972
Ecl136II GAGCTC 1 cut(s) 107
Eco130I CCWWGG 2 cut(s) 339, 462
Eco24I GRGCYC 3 cut(s) 29, 109, 347
Eco32I GATATC 1 cut(s) 644
Eco47I GGWCC 3 cut(s) 121, 380, 572
Eco53kI GAGCTC 1 cut(s) 107
Eco57I CTGAAG 1 cut(s) 590
Eco81I CCTNAGG 2 cut(s) 435, 943
Eco88I CYCGRG 1 cut(s) 248
EcoICRI GAGCTC 1 cut(s) 107
EcoO109I RGGNCCY 4 cut(s) 121, 216, 343, 344
EcoRII CCWGG 4 cut(s) 138, 231, 273, 691
EcoRV GATATC 1 cut(s) 644
EcoT14I CCWWGG 2 cut(s) 339, 462
EcoT22I ATGCAT 2 cut(s) 550, 819
EcoT38I GRGCYC 3 cut(s) 29, 109, 347
ErhI CCWWGG 2 cut(s) 339, 462
FaeI CATG 5 cut(s) 370, 466, 474, 677, 821
FalI AAGNNNNNCTT 1 cut(s) 1038
FaqI GGGAC 2 cut(s) 366, 585
FatI CATG 5 cut(s) 366, 462, 470, 673, 817
FauI CCCGC 2 cut(s) 407, 561
Fnu4HI GCNGC 5 cut(s) 8, 73, 326, 519, 566
FokI GGATG 2 cut(s) 557, 762
FriOI GRGCYC 3 cut(s) 29, 109, 347
Fsp4HI GCNGC 5 cut(s) 8, 73, 326, 519, 566
FspBI CTAG 2 cut(s) 584, 860
GluI GCNGC 5 cut(s) 8, 73, 326, 519, 566
HaeIII GGCC 6 cut(s) 54, 217, 345, 618, 912, 948
HapII CCGG 3 cut(s) 11, 102, 768
Hin1II CATG 5 cut(s) 370, 466, 474, 677, 821
HincII GTYRAC 2 cut(s) 280, 789
HindII GTYRAC 2 cut(s) 280, 789
HinfI GANTC 8 cut(s) 38, 88, 204, 244, 375, 467, 687, 959
HpaI GTTAAC 1 cut(s) 789
HpaII CCGG 3 cut(s) 11, 102, 768
HphI GGTGA 1 cut(s) 25
Hpy166II GTNNAC 2 cut(s) 280, 789
Hpy188I TCNGA 8 cut(s) 24, 49, 87, 95, 193, 749, 765, 925
Hpy188III TCNNGA 5 cut(s) 42, 248, 407, 446, 934
Hpy8I GTNNAC 2 cut(s) 280, 789
HpyAV CCTTC 5 cut(s) 55, 339, 590, 614, 730
HpyCH4III ACNGT 1 cut(s) 631
HpyF10VI GCNNNNNNNGC 6 cut(s) 223, 351, 430, 500, 515, 926
HpyF3I CTNAG 7 cut(s) 23, 92, 112, 435, 447, 710, 943
Hsp92II CATG 5 cut(s) 370, 466, 474, 677, 821
KspAI GTTAAC 1 cut(s) 789
Kzo9I GATC 3 cut(s) 19, 44, 148
LmnI GCTCC 6 cut(s) 4, 64, 104, 421, 592, 868
Lsp1109I GCAGC 3 cut(s) 337, 505, 577
LweI GCATC 5 cut(s) 535, 838, 888, 916, 929
MabI ACCWGGT 1 cut(s) 231
MaeI CTAG 2 cut(s) 584, 860
MaeIII GTNAC 3 cut(s) 241, 599, 829
MalI GATC 3 cut(s) 21, 46, 150
MboI GATC 3 cut(s) 19, 44, 148
MboII GAAGA 3 cut(s) 177, 180, 888
MfeI CAATTG 3 cut(s) 56, 221, 495
MflI RGATCY 1 cut(s) 19
MhlI GDGCHC 4 cut(s) 29, 109, 267, 347
MlsI TGGCCA 2 cut(s) 618, 912
MluCI AATT 4 cut(s) 56, 221, 299, 495
MluNI TGGCCA 2 cut(s) 618, 912
MlyI GAGTC 4 cut(s) 97, 198, 238, 384
MmeI TCCRAC 4 cut(s) 65, 216, 614, 727
Mox20I TGGCCA 2 cut(s) 618, 912
Mph1103I ATGCAT 2 cut(s) 550, 819
MroXI GAANNNNTTC 1 cut(s) 176
MscI TGGCCA 2 cut(s) 618, 912
MseI TTAA 4 cut(s) 414, 665, 699, 788
Msp20I TGGCCA 2 cut(s) 618, 912
MspA1I CMGCKG 1 cut(s) 568
MspI CCGG 3 cut(s) 11, 102, 768
MspR9I CCNGG 4 cut(s) 140, 233, 275, 693
MunI CAATTG 3 cut(s) 56, 221, 495
Mva1269I GAATGC 2 cut(s) 548, 819
MvaI CCWGG 4 cut(s) 140, 233, 275, 693
MwoI GCNNNNNNNGC 6 cut(s) 223, 351, 430, 500, 515, 926
NcoI CCATGG 1 cut(s) 462
NdeII GATC 3 cut(s) 19, 44, 148
NlaIII CATG 5 cut(s) 370, 466, 474, 677, 821
NlaIV GGNNCC 7 cut(s) 123, 218, 345, 382, 423, 573, 741
NmuCI GTSAC 2 cut(s) 241, 599
NsiI ATGCAT 2 cut(s) 550, 819
NspI RCATGY 1 cut(s) 370
PasI CCCWGGG 1 cut(s) 692
PciI ACATGT 1 cut(s) 366
PctI GAATGC 2 cut(s) 548, 819
PdmI GAANNNNTTC 1 cut(s) 176
PfeI GAWTC 4 cut(s) 38, 467, 687, 959
PkrI GCNGC 5 cut(s) 9, 74, 327, 520, 567
Ple19I CGATCG 1 cut(s) 151
PleI GAGTC 4 cut(s) 96, 198, 238, 383
PpsI GAGTC 4 cut(s) 96, 198, 238, 383
PpuMI RGGWCCY 1 cut(s) 121
PscI ACATGT 1 cut(s) 366
Psp124BI GAGCTC 1 cut(s) 109
Psp5II RGGWCCY 1 cut(s) 121
Psp6I CCWGG 4 cut(s) 138, 231, 273, 691
PspGI CCWGG 4 cut(s) 138, 231, 273, 691
PspN4I GGNNCC 7 cut(s) 123, 218, 345, 382, 423, 573, 741
PspOMI GGGCCC 1 cut(s) 343
PspPI GGNCC 7 cut(s) 52, 121, 216, 343, 344, 380, 572
PspPPI RGGWCCY 1 cut(s) 121
PsuI RGATCY 1 cut(s) 19
PvuI CGATCG 1 cut(s) 151
RsaI GTAC 3 cut(s) 133, 479, 628
RsaNI GTAC 3 cut(s) 132, 478, 627
SacI GAGCTC 1 cut(s) 109
SaqAI TTAA 4 cut(s) 414, 665, 699, 788
SatI GCNGC 5 cut(s) 8, 73, 326, 519, 566
Sau3AI GATC 3 cut(s) 19, 44, 148
Sau96I GGNCC 7 cut(s) 52, 121, 216, 343, 344, 380, 572
SchI GAGTC 4 cut(s) 97, 198, 238, 384
ScrFI CCNGG 4 cut(s) 140, 233, 275, 693
SduI GDGCHC 4 cut(s) 29, 109, 267, 347
SexAI ACCWGGT 1 cut(s) 231
SfaNI GCATC 5 cut(s) 535, 838, 888, 916, 929
SinI GGWCC 3 cut(s) 121, 380, 572
Sse9I AATT 4 cut(s) 56, 221, 299, 495
SsiI CCGC 6 cut(s) 72, 135, 400, 419, 568, 983
SspMI CTAG 2 cut(s) 584, 860
SstI GAGCTC 1 cut(s) 109
StyD4I CCNGG 4 cut(s) 138, 231, 273, 691
StyI CCWWGG 2 cut(s) 339, 462
TaaI ACNGT 1 cut(s) 631
TaqI TCGA 2 cut(s) 127, 159
TaqII GACCGA 1 cut(s) 368
TasI AATT 4 cut(s) 56, 221, 299, 495
TauI GCSGC 1 cut(s) 75
TfiI GAWTC 4 cut(s) 38, 467, 687, 959
Tru1I TTAA 4 cut(s) 414, 665, 699, 788
Tru9I TTAA 4 cut(s) 414, 665, 699, 788
TseFI GTSAC 2 cut(s) 241, 599
TseI GCWGC 4 cut(s) 7, 325, 518, 565
Tsp45I GTSAC 2 cut(s) 241, 599
TspDTI ATGAA 3 cut(s) 459, 662, 834
TspGWI ACGGA 1 cut(s) 1012
VpaK11BI GGWCC 3 cut(s) 121, 380, 572
XceI RCATGY 1 cut(s) 370
XmnI GAANNNNTTC 1 cut(s) 176
XspI CTAG 2 cut(s) 584, 860
Zsp2I ATGCAT 2 cut(s) 550, 819
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.