FvH4_7g00610
ERF Family

and Fe(II)-dependent oxygenase superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0009235
Physical Location & Seq
Forward (+)
1169073 .. 1172063
2991 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g00610.t2

Sequence Viewer

Length: 1059 bp
ATGGAGCTGGCGGTGATAGATCTGAGCCCCTACCTGAAATCGGAATCGGAGGGGCAATTGAAGGAGCTGTGCAGCGAGGTCAGCCGGAGTCTCAGAGAGACGGGAGCTCTCTTAGTGAAGGACCCCCGATGCACAGCTGAGGACAACGATCGCTTCCTCGATATGATGGAGCACTACTTCGACTCTTCCGACGACTTCAAGCGACTCCACGAGCGGCCCCATTTGCATTACCAGGTCGGGGTGACTCCCGAGGGTGTGGAAGTTCCGAGAAGCCTGGTGGATGAAGAAATGCAGGAAAAATTGAAACAAATGCCAAAACAAGTGCAACCTGCCACTCCCAAGGGCCCTGATTGCAAATGGCGATACATGTGGAGAGTCGGTCCTCGCCCTTCCGAAACCAGCTTTAAGGAACTTAATGCAGAGCCGGTTGTGCCTGAGGGTTTTCCTGAGTGGAAAGAGACCATGGATTCATGGGGGTACAAGATGATATCCGCAATAGAGGCTGTTGCTGAAATGGCTGCCATCGGATTTGGTTTGCCAAAGGATGCATTCACTTCCCTGATGCAGCAGGGACCACACCTTCTAGCTCCAACTGGAAGTGACCTGCGGCGTTATGGTCAGGAGGGTACTGTCTTTGCAGGATATCACTATGACCTGAACTTTTTAACTATTCATGGCAGAAGTAGGTTCCCAGGGCTTAATATCTGGCTAAGAAATGGGCAAAAAGTTGAAGTTAAAGTTCCTGTTGGATGTCTGCTCATTCAGACTGGAAAGCAGATAGAATGGTTAACCGGTGGAGATTGCATAGCTGGAATGCATGAAGTTGTCGTAACCAACAGGACAACTGATGCAATCAAACTAGCAATGGAGCAAAATCGCATCTTATGGAGAGTATCTTCTACATTGTTTGGCCACATAGCATCTGATGCTGTGTTGAAACCCTTAGGCCACTTTGCCGATTCACCACTTGCCAGTAAATATCCGCCCATTCATGCTGGGGATTATGTTGAACAAGAGCTTTCTGTAATCAATCTCAAAGGAAACAAAGGACAAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DIOX_N

Protein Analysis

353

Amino Acids

39.57

Weight (kDa)

5.71

Isoelectric Point (pI)

50.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 337, 612
AccBSI CCGCTC 1 cut(s) 214
AciI CCGC 5 cut(s) 11, 214, 492, 607, 983
AcoI YGGCCR 1 cut(s) 910
AfaI GTAC 2 cut(s) 479, 628
AfiI CCNNNNNNNGG 2 cut(s) 40, 238
AflIII ACRYGT 1 cut(s) 366
AgeI ACCGGT 1 cut(s) 791
AgsI TTSAA 6 cut(s) 61, 199, 304, 731, 937, 1010
AjnI CCWGG 3 cut(s) 231, 273, 691
AluBI AGCT 8 cut(s) 7, 67, 107, 137, 402, 587, 809, 1018
AluI AGCT 8 cut(s) 7, 67, 107, 137, 402, 587, 809, 1018
Alw21I GWGCWC 2 cut(s) 109, 174
Alw26I GTCTC 3 cut(s) 92, 95, 452
Ama87I CYCGRG 1 cut(s) 248
AoxI GGCC 4 cut(s) 215, 343, 910, 946
ApaI GGGCCC 1 cut(s) 347
ApeKI GCWGC 3 cut(s) 72, 518, 565
AsiGI ACCGGT 1 cut(s) 791
AspS9I GGNCC 6 cut(s) 121, 216, 343, 344, 380, 572
AsuHPI GGTGA 3 cut(s) 25, 253, 954
AvaI CYCGRG 1 cut(s) 248
AvaII GGWCC 3 cut(s) 121, 380, 572
AxyI CCTNAGG 2 cut(s) 435, 943
BaeGI GKGCMC 1 cut(s) 347
BalI TGGCCA 1 cut(s) 912
BanII GRGCYC 3 cut(s) 29, 109, 347
BauI CACGAG 1 cut(s) 209
Bbv12I GWGCWC 2 cut(s) 109, 174
BbvCI CCTCAGC 1 cut(s) 138
BbvI GCAGC 3 cut(s) 84, 505, 577
BccI CCATC 2 cut(s) 160, 530
BciT130I CCWGG 3 cut(s) 233, 275, 693
BcoDI GTCTC 3 cut(s) 92, 95, 452
BfaI CTAG 2 cut(s) 584, 860
BfuAI ACCTGC 2 cut(s) 337, 612
BglII AGATCT 1 cut(s) 19
BisI GCNGC 5 cut(s) 73, 215, 519, 566, 608
BlsI GCNGC 5 cut(s) 74, 216, 520, 567, 609
Bme1390I CCNGG 3 cut(s) 233, 275, 693
Bme18I GGWCC 3 cut(s) 121, 380, 572
BmeT110I CYCGRG 1 cut(s) 248
BmgT120I GGNCC 6 cut(s) 121, 216, 343, 344, 380, 572
BmiI GGNNCC 5 cut(s) 123, 218, 345, 573, 689
BmrFI CCNGG 3 cut(s) 233, 275, 693
BmsI GCATC 7 cut(s) 119, 535, 552, 838, 888, 916, 929
Bpu10I CCTNAGC 1 cut(s) 138
BsaI GGTCTC 1 cut(s) 452
BsaJI CCNNGG 5 cut(s) 249, 339, 462, 691, 692
BsaWI WCCGGW 1 cut(s) 791
BsaXI ACNNNNNCTCC 2 cut(s) 364, 394
Bsc4I CCNNNNNNNGG 2 cut(s) 40, 238
Bse118I RCCGGY 2 cut(s) 424, 791
Bse1I ACTGG 3 cut(s) 598, 772, 972
Bse21I CCTNAGG 2 cut(s) 435, 943
Bse3DI GCAATG 1 cut(s) 870
BseBI CCWGG 3 cut(s) 233, 275, 693
BseDI CCNNGG 5 cut(s) 249, 339, 462, 691, 692
BseGI GGATG 3 cut(s) 286, 550, 755
BseLI CCNNNNNNNGG 2 cut(s) 40, 238
BseMI GCAATG 1 cut(s) 870
BseMII CTCAG 5 cut(s) 14, 106, 129, 426, 438
BseNI ACTGG 3 cut(s) 598, 772, 972
BseSI GKGCMC 1 cut(s) 347
BseXI GCAGC 3 cut(s) 84, 505, 577
BseYI CCCAGC 1 cut(s) 995
BsgI GTGCAG 1 cut(s) 91
Bsh1285I CGRYCG 1 cut(s) 151
BshFI GGCC 4 cut(s) 217, 345, 912, 948
BshTI ACCGGT 1 cut(s) 791
BsiEI CGRYCG 1 cut(s) 151
BsiHKAI GWGCWC 2 cut(s) 109, 174
BsiHKCI CYCGRG 1 cut(s) 248
BsiSI CCGG 3 cut(s) 85, 425, 792
BslFI GGGAC 1 cut(s) 585
BslI CCNNNNNNNGG 2 cut(s) 40, 238
BsmAI GTCTC 3 cut(s) 92, 95, 452
BsmBI CGTCTC 1 cut(s) 92
BsmFI GGGAC 1 cut(s) 585
BsmI GAATGC 2 cut(s) 548, 819
BsnI GGCC 4 cut(s) 217, 345, 912, 948
Bso31I GGTCTC 1 cut(s) 452
BsoBI CYCGRG 1 cut(s) 248
Bsp120I GGGCCC 1 cut(s) 343
Bsp1286I GDGCHC 4 cut(s) 29, 109, 174, 347
Bsp143I GATC 2 cut(s) 19, 148
Bsp19I CCATGG 1 cut(s) 462
BspACI CCGC 5 cut(s) 11, 214, 492, 607, 983
BspANI GGCC 4 cut(s) 217, 345, 912, 948
BspCNI CTCAG 5 cut(s) 15, 105, 130, 427, 439
BspLI GGNNCC 5 cut(s) 123, 218, 345, 573, 689
BspMI ACCTGC 2 cut(s) 337, 612
BspTNI GGTCTC 1 cut(s) 452
BsrBI CCGCTC 1 cut(s) 214
BsrDI GCAATG 1 cut(s) 870
BsrFI RCCGGY 2 cut(s) 424, 791
BsrI ACTGG 3 cut(s) 598, 772, 972
BssAI RCCGGY 2 cut(s) 424, 791
BssECI CCNNGG 5 cut(s) 249, 339, 462, 691, 692
BssMI GATC 2 cut(s) 19, 148
BssSI CACGAG 1 cut(s) 209
BssT1I CCWWGG 2 cut(s) 339, 462
Bst2BI CACGAG 1 cut(s) 209
Bst2UI CCWGG 3 cut(s) 233, 275, 693
Bst4CI ACNGT 1 cut(s) 631
Bst6I CTCTTC 1 cut(s) 190
BstAPI GCANNNNNTGC 1 cut(s) 926
BstC8I GCNNGC 1 cut(s) 9
BstDEI CTNAG 8 cut(s) 23, 92, 112, 138, 435, 447, 710, 943
BstDSI CCRYGG 1 cut(s) 462
BstF5I GGATG 3 cut(s) 286, 550, 755
BstKTI GATC 2 cut(s) 22, 151
BstMAI GTCTC 3 cut(s) 92, 95, 452
BstMBI GATC 2 cut(s) 19, 148
BstMCI CGRYCG 1 cut(s) 151
BstMWI GCNNNNNNNGC 7 cut(s) 81, 223, 351, 430, 500, 515, 926
BstNI CCWGG 3 cut(s) 233, 275, 693
BstNSI RCATGY 1 cut(s) 370
BstSCI CCNGG 3 cut(s) 231, 273, 691
BstSLI GKGCMC 1 cut(s) 347
BstV1I GCAGC 3 cut(s) 84, 505, 577
BstX2I RGATCY 1 cut(s) 19
BstYI RGATCY 1 cut(s) 19
Bsu36I CCTNAGG 2 cut(s) 435, 943
BsuRI GGCC 4 cut(s) 217, 345, 912, 948
BtgI CCRYGG 1 cut(s) 462
BtsCI GGATG 3 cut(s) 286, 550, 755
BveI ACCTGC 2 cut(s) 337, 612
Cac8I GCNNGC 1 cut(s) 9
Cfr10I RCCGGY 2 cut(s) 424, 791
Cfr13I GGNCC 6 cut(s) 121, 216, 343, 344, 380, 572
CsiI ACCWGGT 1 cut(s) 231
Csp6I GTAC 2 cut(s) 478, 627
CspAI ACCGGT 1 cut(s) 791
CviAII CATG 6 cut(s) 367, 463, 471, 674, 818, 992
CviQI GTAC 2 cut(s) 478, 627
DdeI CTNAG 8 cut(s) 23, 92, 112, 138, 435, 447, 710, 943
DpnI GATC 2 cut(s) 21, 150
DpnII GATC 2 cut(s) 19, 148
EaeI YGGCCR 1 cut(s) 910
Eam1104I CTCTTC 1 cut(s) 190
EarI CTCTTC 1 cut(s) 190
EciI GGCGGA 1 cut(s) 972
Ecl136II GAGCTC 1 cut(s) 107
Eco130I CCWWGG 2 cut(s) 339, 462
Eco24I GRGCYC 3 cut(s) 29, 109, 347
Eco31I GGTCTC 1 cut(s) 452
Eco32I GATATC 2 cut(s) 489, 644
Eco47I GGWCC 3 cut(s) 121, 380, 572
Eco53kI GAGCTC 1 cut(s) 107
Eco81I CCTNAGG 2 cut(s) 435, 943
Eco88I CYCGRG 1 cut(s) 248
EcoICRI GAGCTC 1 cut(s) 107
EcoO109I RGGNCCY 3 cut(s) 121, 343, 344
EcoRII CCWGG 3 cut(s) 231, 273, 691
EcoRV GATATC 2 cut(s) 489, 644
EcoT14I CCWWGG 2 cut(s) 339, 462
EcoT22I ATGCAT 2 cut(s) 550, 819
EcoT38I GRGCYC 3 cut(s) 29, 109, 347
ErhI CCWWGG 2 cut(s) 339, 462
Esp3I CGTCTC 1 cut(s) 92
FaeI CATG 6 cut(s) 370, 466, 474, 677, 821, 995
FaqI GGGAC 1 cut(s) 585
FatI CATG 6 cut(s) 366, 462, 470, 673, 817, 991
Fnu4HI GCNGC 5 cut(s) 73, 215, 519, 566, 608
FokI GGATG 3 cut(s) 293, 557, 762
FriOI GRGCYC 3 cut(s) 29, 109, 347
Fsp4HI GCNGC 5 cut(s) 73, 215, 519, 566, 608
FspBI CTAG 2 cut(s) 584, 860
GluI GCNGC 5 cut(s) 73, 215, 519, 566, 608
GsaI CCCAGC 1 cut(s) 999
HaeIII GGCC 4 cut(s) 217, 345, 912, 948
HapII CCGG 3 cut(s) 85, 425, 792
Hin1II CATG 6 cut(s) 370, 466, 474, 677, 821, 995
HincII GTYRAC 1 cut(s) 789
HindII GTYRAC 1 cut(s) 789
HinfI GANTC 8 cut(s) 44, 88, 182, 204, 244, 375, 467, 959
HpaI GTTAAC 1 cut(s) 789
HpaII CCGG 3 cut(s) 85, 425, 792
HphI GGTGA 3 cut(s) 25, 253, 954
Hpy166II GTNNAC 1 cut(s) 789
Hpy188III TCNNGA 3 cut(s) 248, 446, 620
Hpy8I GTNNAC 1 cut(s) 789
Hpy99I CGWCG 1 cut(s) 194
HpyAV CCTTC 4 cut(s) 55, 112, 399, 590
HpyCH4III ACNGT 1 cut(s) 631
HpyF10VI GCNNNNNNNGC 7 cut(s) 81, 223, 351, 430, 500, 515, 926
HpyF3I CTNAG 8 cut(s) 23, 92, 112, 138, 435, 447, 710, 943
Hsp92II CATG 6 cut(s) 370, 466, 474, 677, 821, 995
KspAI GTTAAC 1 cut(s) 789
Kzo9I GATC 2 cut(s) 19, 148
LmnI GCTCC 6 cut(s) 4, 64, 104, 169, 592, 868
Lsp1109I GCAGC 3 cut(s) 84, 505, 577
LweI GCATC 7 cut(s) 119, 535, 552, 838, 888, 916, 929
MabI ACCWGGT 1 cut(s) 231
MaeI CTAG 2 cut(s) 584, 860
MaeIII GTNAC 3 cut(s) 241, 599, 829
MalI GATC 2 cut(s) 21, 150
MbiI CCGCTC 1 cut(s) 214
MboI GATC 2 cut(s) 19, 148
MboII GAAGA 3 cut(s) 177, 296, 888
MfeI CAATTG 1 cut(s) 56
MflI RGATCY 1 cut(s) 19
MhlI GDGCHC 4 cut(s) 29, 109, 174, 347
MlsI TGGCCA 1 cut(s) 912
MluCI AATT 2 cut(s) 56, 299
MluNI TGGCCA 1 cut(s) 912
MlyI GAGTC 5 cut(s) 97, 176, 198, 238, 384
MmeI TCCRAC 3 cut(s) 213, 614, 727
MnlI CCTC 9 cut(s) 43, 70, 133, 167, 244, 393, 430, 493, 616
Mox20I TGGCCA 1 cut(s) 912
Mph1103I ATGCAT 2 cut(s) 550, 819
MscI TGGCCA 1 cut(s) 912
MseI TTAA 6 cut(s) 405, 414, 665, 699, 735, 788
Msp20I TGGCCA 1 cut(s) 912
MspA1I CMGCKG 1 cut(s) 137
MspI CCGG 3 cut(s) 85, 425, 792
MspR9I CCNGG 3 cut(s) 233, 275, 693
MunI CAATTG 1 cut(s) 56
Mva1269I GAATGC 2 cut(s) 548, 819
MvaI CCWGG 3 cut(s) 233, 275, 693
MwoI GCNNNNNNNGC 7 cut(s) 81, 223, 351, 430, 500, 515, 926
NcoI CCATGG 1 cut(s) 462
NdeII GATC 2 cut(s) 19, 148
NlaIII CATG 6 cut(s) 370, 466, 474, 677, 821, 995
NlaIV GGNNCC 5 cut(s) 123, 218, 345, 573, 689
NmuCI GTSAC 2 cut(s) 241, 599
NsiI ATGCAT 2 cut(s) 550, 819
NspI RCATGY 1 cut(s) 370
PasI CCCWGGG 1 cut(s) 692
PciI ACATGT 1 cut(s) 366
PcsI WCGNNNNNNNCGW 1 cut(s) 186
PctI GAATGC 2 cut(s) 548, 819
PfeI GAWTC 3 cut(s) 44, 467, 959
PinAI ACCGGT 1 cut(s) 791
PkrI GCNGC 5 cut(s) 74, 216, 520, 567, 609
Ple19I CGATCG 1 cut(s) 151
PleI GAGTC 5 cut(s) 96, 176, 198, 238, 383
PpsI GAGTC 5 cut(s) 96, 176, 198, 238, 383
PpuMI RGGWCCY 1 cut(s) 121
PscI ACATGT 1 cut(s) 366
Psp124BI GAGCTC 1 cut(s) 109
Psp5II RGGWCCY 1 cut(s) 121
Psp6I CCWGG 3 cut(s) 231, 273, 691
PspFI CCCAGC 1 cut(s) 995
PspGI CCWGG 3 cut(s) 231, 273, 691
PspN4I GGNNCC 5 cut(s) 123, 218, 345, 573, 689
PspOMI GGGCCC 1 cut(s) 343
PspPI GGNCC 6 cut(s) 121, 216, 343, 344, 380, 572
PspPPI RGGWCCY 1 cut(s) 121
PsuI RGATCY 1 cut(s) 19
PvuI CGATCG 1 cut(s) 151
PvuII CAGCTG 1 cut(s) 137
RsaI GTAC 2 cut(s) 479, 628
RsaNI GTAC 2 cut(s) 478, 627
SacI GAGCTC 1 cut(s) 109
SaqAI TTAA 6 cut(s) 405, 414, 665, 699, 735, 788
SatI GCNGC 5 cut(s) 73, 215, 519, 566, 608
Sau3AI GATC 2 cut(s) 19, 148
Sau96I GGNCC 6 cut(s) 121, 216, 343, 344, 380, 572
SchI GAGTC 5 cut(s) 97, 176, 198, 238, 384
ScrFI CCNGG 3 cut(s) 233, 275, 693
SduI GDGCHC 4 cut(s) 29, 109, 174, 347
SexAI ACCWGGT 1 cut(s) 231
SfaNI GCATC 7 cut(s) 119, 535, 552, 838, 888, 916, 929
SinI GGWCC 3 cut(s) 121, 380, 572
Sse9I AATT 2 cut(s) 56, 299
SsiI CCGC 5 cut(s) 11, 214, 492, 607, 983
SspMI CTAG 2 cut(s) 584, 860
SstI GAGCTC 1 cut(s) 109
StyD4I CCNGG 3 cut(s) 231, 273, 691
StyI CCWWGG 2 cut(s) 339, 462
TaaI ACNGT 1 cut(s) 631
TaqI TCGA 2 cut(s) 159, 180
TaqII GACCGA 1 cut(s) 368
TasI AATT 2 cut(s) 56, 299
TauI GCSGC 2 cut(s) 217, 610
TfiI GAWTC 3 cut(s) 44, 467, 959
Tru1I TTAA 6 cut(s) 405, 414, 665, 699, 735, 788
Tru9I TTAA 6 cut(s) 405, 414, 665, 699, 735, 788
TseFI GTSAC 2 cut(s) 241, 599
TseI GCWGC 3 cut(s) 72, 518, 565
Tsp45I GTSAC 2 cut(s) 241, 599
TspDTI ATGAA 5 cut(s) 297, 459, 662, 834, 980
VpaK11BI GGWCC 3 cut(s) 121, 380, 572
XceI RCATGY 1 cut(s) 370
XspI CTAG 2 cut(s) 584, 860
Zsp2I ATGCAT 2 cut(s) 550, 819
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.