Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0009235

Physical Location & Seq

Genomic Coordinates Forward (+)

575341 .. 578494

Gene Structure 3154 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1005600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGGATCTGACGGTGGTAGATCTGAGCGCGTACTTGGAATCGGAAGAGGGCGGAGTGGAGGAGCTGTGCGGCGAGGTGAGTCGGAGTCTGAGAGAAACGGGAGCTTTGTTGGTCAAGGATCCCAGATGTACGGCGGAGGACAACGATCGCTTCCTTGATATGATGGAGAGGTACTTTGACAGTCCGCCGGAGTTCAAGCGACTCCAGGAGAGGCCCCAATTGCATTACCAGGTTGGCGTGACACCGGAAGGCGTGGAAGTCCCGAGAAGCCTTGTTGATGAAGAAATGCAGGAGAAATTGAAAGAAATGCCCAAAGAGTTCCAGCCATCCATCCCCAAAGGGGCAGATCGCAAATGGCGATACATGTGGAGGGTGGGTCCTCGACCCTCGAAAACCCGCTTTCAGGAACTTAATGCAGAGCCTGTTGTACCGGAGGGGTTTCCTGAATGGAAAGATACCATGGATTCATGGGGTTACAAGATGATTTCCGCAATAGAGGCTGTTGCTGAAATGGCTGCCATTGGATTTGGCTTGCCAAAGGATGCATTCACTTCTCTTATGAATCAGGGGCCACACCTTCTAGCTCCAACAGGAAGTGACCTTCGGCGTTACGGCCAAGAGGGTACTGTGTTTGCAGGATATCACTATGACCTGAACTTTCTAACTATTCATGGCAGAAGTAGATTTCCTGGTCTGAACATTTGGTTAAAAAATGGGCAAAAAGTTGAAGTCAAGGTTCCTGTAGGATGTCTTCTCATTCAGACCGGGAAGCAGATAGAATGGTTGACTGCAGGTGATTGCATAGCTGGATTGCATGAAGTTATCGTAACAAACAGGACGATTGATGCAATCAAGCTTGCAACAGAGCAAAGTCGCTTACTATGGAGAGTATCTTCAACATTGTTTGCACACATAGCATCTGATGCTGTGTTGAAGCCCTTAGGTCACTTTGCAGAATCCCCGCTTGTGAGTAAATATCCGCCCATTTATGCAGGAGAGTTTGTTGAACAAGAGCTTGCAGTAATCAATCTCAAAGGCAACAAAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DIOX_N

Protein Analysis

350

Amino Acids

39.34

Weight (kDa)

5.31

Isoelectric Point (pI)

50.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009235)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48020
fragaria_vesca	FvH4_7g00610 FvH4_7g00610
malus_domestica	MD02G1316300.v1.1 MD07G1005600.v1.1
prunus_persica	Prupe.2G008000_v2.0.a1 Prupe.2G008000_v2.0.a1 Prupe.2G008200_v2.0.a1 Prupe.2G008200_v2.0.a1
pyrus_communis	pycom02g26490 pycom07g00470
rosa_chinensis	RchiOBHm_Chr1g0314801
rosa_laevigata	RLG00000030763
rosa_multiflora	Rmu_sc0002833.1_g000039 Rmu_sc0010489.1_g000016
rosa_roxburghii	Rroxscaffold_4G00331870
rosa_rugosa	Rorug01G0001900
rosa_samantha	Rh1AG012800 Rh1BG004400 Rh1CG011300 Rh1DG006100
rosa_wichuraiana	Rw1G000540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	782
Acc36I	ACCTGC	1 cut(s)	782
AccII	CGCG	1 cut(s)	29
AciI	CCGC	8 cut(s)	51, 69, 134, 185, 397, 489, 962, 980
AclWI	GGATC	3 cut(s)	12, 113, 126
AcoI	YGGCCR	1 cut(s)	613
AfaI	GTAC	5 cut(s)	32, 130, 173, 429, 625
AfiI	CCNNNNNNNGG	2 cut(s)	340, 403
AflIII	ACRYGT	1 cut(s)	363
AgsI	TTSAA	6 cut(s)	196, 301, 728, 897, 934, 1007
AjnI	CCWGG	3 cut(s)	204, 228, 688
AluBI	AGCT	6 cut(s)	64, 104, 584, 806, 856, 1015
AluI	AGCT	6 cut(s)	64, 104, 584, 806, 856, 1015
AlwI	GGATC	3 cut(s)	12, 113, 126
AlwNI	CAGNNNCTG	1 cut(s)	422
Ama87I	CYCGRG	1 cut(s)	262
AoxI	GGCC	3 cut(s)	212, 569, 613
ApeKI	GCWGC	1 cut(s)	515
AspLEI	GCGC	1 cut(s)	29
AspS9I	GGNCC	3 cut(s)	213, 377, 569
AsuC2I	CCSGG	1 cut(s)	766
AsuHPI	GGTGA	2 cut(s)	88, 806
AvaI	CYCGRG	1 cut(s)	262
AvaII	GGWCC	1 cut(s)	377
AxyI	CCTNAGG	1 cut(s)	940
BamHI	GGATCC	1 cut(s)	118
BarI	GAAGNNNNNNTAC	2 cut(s)	735, 767
BbsI	GAAGAC	1 cut(s)	743
BbvI	GCAGC	1 cut(s)	502
BccI	CCATC	3 cut(s)	157, 334, 338
BceAI	ACGGC	2 cut(s)	147, 628
BciT130I	CCWGG	3 cut(s)	206, 230, 690
BcnI	CCSGG	1 cut(s)	766
BfaI	CTAG	1 cut(s)	581
BfmI	CTRYAG	2 cut(s)	741, 789
BfuAI	ACCTGC	1 cut(s)	782
BglII	AGATCT	1 cut(s)	19
BisI	GCNGC	2 cut(s)	70, 516
BlsI	GCNGC	2 cut(s)	71, 517
Bme1390I	CCNGG	4 cut(s)	206, 230, 690, 766
Bme18I	GGWCC	1 cut(s)	377
BmeT110I	CYCGRG	1 cut(s)	262
BmgT120I	GGNCC	3 cut(s)	213, 377, 569
BmiI	GGNNCC	5 cut(s)	120, 215, 378, 570, 738
BmrFI	CCNGG	4 cut(s)	206, 230, 690, 766
BmsI	GCATC	4 cut(s)	532, 835, 913, 926
BpiI	GAAGAC	1 cut(s)	743
BpmI	CTGGAG	1 cut(s)	188
BpuMI	CCSGG	1 cut(s)	766
BsaJI	CCNNGG	1 cut(s)	459
BsaWI	WCCGGW	2 cut(s)	244, 430
BsaXI	ACNNNNNCTCC	6 cut(s)	50, 80, 361, 391, 987, 1017
Bsc4I	CCNNNNNNNGG	2 cut(s)	340, 403
Bse21I	CCTNAGG	1 cut(s)	940
BseBI	CCWGG	3 cut(s)	206, 230, 690
BseDI	CCNNGG	1 cut(s)	459
BseGI	GGATG	4 cut(s)	326, 330, 547, 752
BseLI	CCNNNNNNNGG	2 cut(s)	340, 403
BseMII	CTCAG	2 cut(s)	14, 80
BseRI	GAGGAG	1 cut(s)	74
BseXI	GCAGC	1 cut(s)	502
Bsh1236I	CGCG	1 cut(s)	29
Bsh1285I	CGRYCG	1 cut(s)	148
BshFI	GGCC	3 cut(s)	214, 571, 615
BsiEI	CGRYCG	1 cut(s)	148
BsiHKCI	CYCGRG	1 cut(s)	262
BsiSI	CCGG	4 cut(s)	188, 245, 431, 765
BslFI	GGGAC	1 cut(s)	245
BslI	CCNNNNNNNGG	2 cut(s)	340, 403
BsmFI	GGGAC	1 cut(s)	245
BsmI	GAATGC	1 cut(s)	545
BsnI	GGCC	3 cut(s)	214, 571, 615
BsoBI	CYCGRG	1 cut(s)	262
Bsp143I	GATC	5 cut(s)	4, 19, 118, 145, 346
Bsp19I	CCATGG	1 cut(s)	459
BspACI	CCGC	8 cut(s)	51, 69, 134, 185, 397, 489, 962, 980
BspANI	GGCC	3 cut(s)	214, 571, 615
BspCNI	CTCAG	2 cut(s)	15, 81
BspFNI	CGCG	1 cut(s)	29
BspLI	GGNNCC	5 cut(s)	120, 215, 378, 570, 738
BspMAI	CTGCAG	1 cut(s)	793
BspMI	ACCTGC	1 cut(s)	782
BspPI	GGATC	3 cut(s)	12, 113, 126
BssECI	CCNNGG	1 cut(s)	459
BssMI	GATC	5 cut(s)	4, 19, 118, 145, 346
BssT1I	CCWWGG	1 cut(s)	459
Bst2UI	CCWGG	3 cut(s)	206, 230, 690
Bst4CI	ACNGT	3 cut(s)	13, 182, 628
Bst6I	CTCTTC	1 cut(s)	39
BstAPI	GCANNNNNTGC	1 cut(s)	923
BstC8I	GCNNGC	3 cut(s)	533, 858, 1017
BstDEI	CTNAG	3 cut(s)	23, 89, 940
BstDSI	CCRYGG	1 cut(s)	459
BstF5I	GGATG	4 cut(s)	326, 330, 547, 752
BstFNI	CGCG	1 cut(s)	29
BstHHI	GCGC	1 cut(s)	29
BstKTI	GATC	5 cut(s)	7, 22, 121, 148, 349
BstMBI	GATC	5 cut(s)	4, 19, 118, 145, 346
BstMCI	CGRYCG	1 cut(s)	148
BstMWI	GCNNNNNNNGC	5 cut(s)	220, 497, 512, 914, 923
BstNI	CCWGG	3 cut(s)	206, 230, 690
BstNSI	RCATGY	1 cut(s)	367
BstSCI	CCNGG	4 cut(s)	204, 228, 688, 764
BstSFI	CTRYAG	2 cut(s)	741, 789
BstUI	CGCG	1 cut(s)	29
BstV1I	GCAGC	1 cut(s)	502
BstV2I	GAAGAC	1 cut(s)	743
BstX2I	RGATCY	3 cut(s)	4, 19, 118
BstYI	RGATCY	3 cut(s)	4, 19, 118
Bsu36I	CCTNAGG	1 cut(s)	940
BsuRI	GGCC	3 cut(s)	214, 571, 615
BtgI	CCRYGG	1 cut(s)	459
BtsCI	GGATG	4 cut(s)	326, 330, 547, 752
BveI	ACCTGC	1 cut(s)	782
Cac8I	GCNNGC	3 cut(s)	533, 858, 1017
CaiI	CAGNNNCTG	1 cut(s)	422
CfoI	GCGC	1 cut(s)	29
Cfr13I	GGNCC	3 cut(s)	213, 377, 569
CsiI	ACCWGGT	1 cut(s)	228
Csp6I	GTAC	5 cut(s)	31, 129, 172, 428, 624
CviAII	CATG	5 cut(s)	364, 460, 468, 671, 815
CviQI	GTAC	5 cut(s)	31, 129, 172, 428, 624
DdeI	CTNAG	3 cut(s)	23, 89, 940
DpnI	GATC	5 cut(s)	6, 21, 120, 147, 348
DpnII	GATC	5 cut(s)	4, 19, 118, 145, 346
EaeI	YGGCCR	1 cut(s)	613
Eam1104I	CTCTTC	1 cut(s)	39
EarI	CTCTTC	1 cut(s)	39
EciI	GGCGGA	4 cut(s)	66, 149, 174, 969
Eco130I	CCWWGG	1 cut(s)	459
Eco32I	GATATC	1 cut(s)	641
Eco47I	GGWCC	1 cut(s)	377
Eco81I	CCTNAGG	1 cut(s)	940
Eco88I	CYCGRG	1 cut(s)	262
EcoO109I	RGGNCCY	2 cut(s)	213, 377
EcoRII	CCWGG	3 cut(s)	204, 228, 688
EcoRV	GATATC	1 cut(s)	641
EcoT14I	CCWWGG	1 cut(s)	459
EcoT22I	ATGCAT	1 cut(s)	547
ErhI	CCWWGG	1 cut(s)	459
FaeI	CATG	5 cut(s)	367, 463, 471, 674, 818
FaqI	GGGAC	1 cut(s)	245
FatI	CATG	5 cut(s)	363, 459, 467, 670, 814
FauI	CCCGC	2 cut(s)	404, 969
Fnu4HI	GCNGC	2 cut(s)	70, 516
FokI	GGATG	4 cut(s)	313, 317, 554, 759
Fsp4HI	GCNGC	2 cut(s)	70, 516
FspBI	CTAG	1 cut(s)	581
GlaI	GCGC	1 cut(s)	28
GluI	GCNGC	2 cut(s)	70, 516
GsuI	CTGGAG	1 cut(s)	188
HaeIII	GGCC	3 cut(s)	214, 571, 615
HapII	CCGG	4 cut(s)	188, 245, 431, 765
HhaI	GCGC	1 cut(s)	29
Hin1II	CATG	5 cut(s)	367, 463, 471, 674, 818
Hin6I	GCGC	1 cut(s)	27
HinP1I	GCGC	1 cut(s)	27
HincII	GTYRAC	1 cut(s)	786
HindII	GTYRAC	1 cut(s)	786
HindIII	AAGCTT	1 cut(s)	854
HinfI	GANTC	7 cut(s)	38, 79, 85, 201, 464, 562, 956
HpaII	CCGG	4 cut(s)	188, 245, 431, 765
HphI	GGTGA	2 cut(s)	88, 806
Hpy166II	GTNNAC	1 cut(s)	786
Hpy188I	TCNGA	8 cut(s)	9, 24, 43, 84, 90, 696, 762, 922
Hpy188III	TCNNGA	3 cut(s)	262, 404, 443
Hpy8I	GTNNAC	1 cut(s)	786
HpyAV	CCTTC	3 cut(s)	242, 587, 611
HpyCH4III	ACNGT	3 cut(s)	13, 182, 628
HpyF10VI	GCNNNNNNNGC	5 cut(s)	220, 497, 512, 914, 923
HpyF3I	CTNAG	3 cut(s)	23, 89, 940
Hsp92II	CATG	5 cut(s)	367, 463, 471, 674, 818
HspAI	GCGC	1 cut(s)	27
Kzo9I	GATC	5 cut(s)	4, 19, 118, 145, 346
LmnI	GCTCC	3 cut(s)	61, 101, 589
Lsp1109I	GCAGC	1 cut(s)	502
LweI	GCATC	4 cut(s)	532, 835, 913, 926
MabI	ACCWGGT	1 cut(s)	228
MaeI	CTAG	1 cut(s)	581
MaeIII	GTNAC	6 cut(s)	238, 473, 596, 608, 826, 944
MalI	GATC	5 cut(s)	6, 21, 120, 147, 348
MboI	GATC	5 cut(s)	4, 19, 118, 145, 346
MboII	GAAGA	4 cut(s)	56, 293, 743, 885
MfeI	CAATTG	1 cut(s)	218
MflI	RGATCY	3 cut(s)	4, 19, 118
MluCI	AATT	2 cut(s)	218, 296
MlyI	GAGTC	3 cut(s)	88, 94, 195
MmeI	TCCRAC	2 cut(s)	62, 611
Mph1103I	ATGCAT	1 cut(s)	547
MseI	TTAA	2 cut(s)	411, 707
MspI	CCGG	4 cut(s)	188, 245, 431, 765
MspR9I	CCNGG	4 cut(s)	206, 230, 690, 766
MunI	CAATTG	1 cut(s)	218
Mva1269I	GAATGC	1 cut(s)	545
MvaI	CCWGG	3 cut(s)	206, 230, 690
MvnI	CGCG	1 cut(s)	29
MwoI	GCNNNNNNNGC	5 cut(s)	220, 497, 512, 914, 923
NciI	CCSGG	1 cut(s)	766
NcoI	CCATGG	1 cut(s)	459
NdeII	GATC	5 cut(s)	4, 19, 118, 145, 346
NlaIII	CATG	5 cut(s)	367, 463, 471, 674, 818
NlaIV	GGNNCC	5 cut(s)	120, 215, 378, 570, 738
NmuCI	GTSAC	3 cut(s)	238, 596, 944
NsiI	ATGCAT	1 cut(s)	547
NspI	RCATGY	1 cut(s)	367
PaqCI	CACCTGC	1 cut(s)	782
PciI	ACATGT	1 cut(s)	363
PcsI	WCGNNNNNNNCGW	1 cut(s)	355
PctI	GAATGC	1 cut(s)	545
PfeI	GAWTC	4 cut(s)	38, 464, 562, 956
PfoI	TCCNGGA	1 cut(s)	204
PkrI	GCNGC	2 cut(s)	71, 517
Ple19I	CGATCG	1 cut(s)	148
PleI	GAGTC	3 cut(s)	87, 93, 195
PpsI	GAGTC	3 cut(s)	87, 93, 195
PpuMI	RGGWCCY	1 cut(s)	377
PscI	ACATGT	1 cut(s)	363
Psp5II	RGGWCCY	1 cut(s)	377
Psp6I	CCWGG	3 cut(s)	204, 228, 688
PspGI	CCWGG	3 cut(s)	204, 228, 688
PspN4I	GGNNCC	5 cut(s)	120, 215, 378, 570, 738
PspPI	GGNCC	3 cut(s)	213, 377, 569
PspPPI	RGGWCCY	1 cut(s)	377
PstI	CTGCAG	1 cut(s)	793
PstNI	CAGNNNCTG	1 cut(s)	422
PsuI	RGATCY	3 cut(s)	4, 19, 118
PvuI	CGATCG	1 cut(s)	148
RsaI	GTAC	5 cut(s)	32, 130, 173, 429, 625
RsaNI	GTAC	5 cut(s)	31, 129, 172, 428, 624
SaqAI	TTAA	2 cut(s)	411, 707
SatI	GCNGC	2 cut(s)	70, 516
Sau3AI	GATC	5 cut(s)	4, 19, 118, 145, 346
Sau96I	GGNCC	3 cut(s)	213, 377, 569
SchI	GAGTC	3 cut(s)	88, 94, 195
ScrFI	CCNGG	4 cut(s)	206, 230, 690, 766
SexAI	ACCWGGT	1 cut(s)	228
SfaNI	GCATC	4 cut(s)	532, 835, 913, 926
SfcI	CTRYAG	2 cut(s)	741, 789
SinI	GGWCC	1 cut(s)	377
Sse9I	AATT	2 cut(s)	218, 296
SsiI	CCGC	8 cut(s)	51, 69, 134, 185, 397, 489, 962, 980
SspMI	CTAG	1 cut(s)	581
StyD4I	CCNGG	4 cut(s)	204, 228, 688, 764
StyI	CCWWGG	1 cut(s)	459
TaaI	ACNGT	3 cut(s)	13, 182, 628
TaqI	TCGA	2 cut(s)	382, 389
TasI	AATT	2 cut(s)	218, 296
TauI	GCSGC	1 cut(s)	72
TfiI	GAWTC	4 cut(s)	38, 464, 562, 956
Tru1I	TTAA	2 cut(s)	411, 707
Tru9I	TTAA	2 cut(s)	411, 707
TseFI	GTSAC	3 cut(s)	238, 596, 944
TseI	GCWGC	1 cut(s)	515
Tsp45I	GTSAC	3 cut(s)	238, 596, 944
TspDTI	ATGAA	5 cut(s)	294, 456, 575, 659, 831
VpaK11BI	GGWCC	1 cut(s)	377
XceI	RCATGY	1 cut(s)	367
XspI	CTAG	1 cut(s)	581
Zsp2I	ATGCAT	1 cut(s)	547

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.