AT5G48940
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0013816
Physical Location & Seq
Forward (+)
19839663 .. 19843859
4197 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G48940.1

Sequence Viewer

Length: 3408 bp
ATGTCTTTGCAAATGCCGATTCCAAGAAAAAAAGCCTTAACTGTTTCTCATTTTTCCATTACATTGTCTCTGTTTTTAGCTTTCTTCATCTCCTCGACCTCTGCATCAACCAATGAAGTCTCAGCTTTGATTTCTTGGCTTCACAGCTCGAACTCGCCGCCACCGTCAGTCTTCTCCGGCTGGAATCCTTCTGATTCTGACCCATGTCAATGGCCTTACATTACTTGTTCCTCCTCAGACAACAAACTCGTTACAGAGATCAATGTCGTCTCTGTTCAGTTAGCTTTACCTTTCCCTCCTAACATTTCTTCGTTTACTTCACTTCAGAAACTCGTTATCTCCAACACTAATCTCACCGGAGCTATATCTTCTGAGATCGGAGATTGTTCGGAGCTTATAGTTATCGATTTAAGCTCAAATAGTCTTGTTGGTGAAATACCTTCGAGTCTAGGGAAGCTCAAGAATCTTCAAGAACTTTGTTTAAACTCCAATGGCCTCACAGGAAAGATCCCACCGGAACTCGGCGACTGCGTTAGCCTCAAGAATCTTGAGATTTTCGATAACTACTTATCCGAGAATCTCCCGTTGGAGCTCGGAAAGATCTCGACTCTTGAGAGCATAAGAGCCGGAGGAAACTCAGAGCTTTCAGGGAAGATCCCGGAGGAGATCGGAAACTGTAGGAATCTCAAGGTCTTAGGGTTAGCAGCAACGAAAATATCCGGTTCTTTACCTGTTTCGTTGGGTCAACTAAGCAAGCTCCAGTCTTTATCTGTCTATTCTACAATGCTCTCAGGTGAGATCCCTAAAGAGCTTGGAAACTGCTCTGAACTTATCAATCTGTTTCTATACGACAATGACTTGTCCGGCACGCTTCCAAAAGAACTAGGAAAGCTTCAAAACCTAGAGAAGATGCTTCTATGGCAGAATAATCTCCACGGACCTATCCCTGAGGAGATTGGATTCATGAAAAGCTTAAACGCCATTGATCTCTCTATGAACTATTTCTCAGGAACCATCCCTAAATCGTTCGGTAACTTGTCGAATCTCCAAGAGCTTATGCTTAGCAGCAACAACATCACCGGGTCAATACCTTCGATTCTAAGTAACTGCACAAAGCTTGTTCAGTTCCAGATTGACGCCAATCAGATTTCAGGTTTGATTCCACCAGAGATTGGATTGCTTAAGGAGCTCAACATCTTCTTGGGATGGCAGAATAAGCTAGAAGGGAATATTCCGGACGAGTTAGCTGGTTGTCAGAATCTTCAAGCTCTTGACTTGTCACAGAATTATCTCACCGGATCATTACCTGCAGGTTTGTTTCAGCTTCGTAATCTGACTAAGCTCTTGCTTATATCTAATGCCATCTCCGGTGTTATCCCACTGGAGATCGGGAACTGCACTTCGCTTGTCAGATTAAGGCTTGTCAATAACAGAATCACCGGAGAAATCCCTAAAGGTATTGGATTTCTTCAGAACCTTAGCTTCCTCGACTTGTCTGAGAACAATCTCTCCGGTCCAGTTCCTTTGGAGATAAGTAATTGTAGACAACTCCAGATGCTTAACTTGAGCAACAACACTCTTCAAGGTTATCTTCCTCTGTCTTTATCATCGTTAACAAAGCTTCAAGTACTTGATGTCTCTTCCAATGACTTGACTGGCAAGATACCTGATAGTCTAGGTCATCTCATTTCACTCAACCGGCTCATTCTAAGTAAGAATTCTTTCAATGGAGAAATCCCTTCGTCTCTCGGTCACTGCACGAATCTTCAGCTTCTTGATCTCAGCAGTAATAACATCTCTGGAACTATACCGGAGGAGCTTTTTGACATCCAAGATCTAGACATTGCGTTAAACTTGAGCTGGAATTCATTAGATGGCTTTATCCCGGAAAGGATTTCCGCGCTTAACCGATTATCCGTGCTCGATATTTCGCATAACATGCTTTCAGGCGACCTTTCTGCGCTGTCCGGTCTAGAAAACTTGGTTTCTCTGAACATCTCTCATAACAGATTCTCAGGTTATCTTCCAGATAGTAAAGTGTTTAGACAGCTGATAGGAGCAGAGATGGAAGGAAACAATGGACTCTGTTCCAAAGGTTTCAGGTCTTGCTTTGTAAGTAACAGTTCACAGTTAACTACACAGCGTGGTGTGCACTCACATAGACTCAGGATAGCCATTGGATTGCTAATCAGCGTGACAGCGGTTCTAGCGGTATTAGGCGTGTTGGCGGTTATACGAGCTAAACAAATGATTCGAGATGATAACGATTCAGAGACTGGAGAAAATCTATGGACATGGCAATTCACACCTTTTCAGAAACTCAACTTCACAGTCGAACATGTACTCAAGTGTTTGGTAGAAGGTAATGTTATAGGGAAAGGTTGCTCCGGGATAGTGTACAAAGCTGAAATGCCTAACAGAGAAGTCATCGCGGTGAAAAAGCTCTGGCCAGTGACAGTACCTAATCTGAATGAGAAAACTAAGTCATCAGGAGTTCGAGACTCATTCTCAGCTGAAGTAAAAACACTTGGATCGATCAGACACAAGAACATTGTACGCTTCTTGGGATGTTGTTGGAACAAGAACACTAGACTTCTTATGTATGATTATATGTCAAATGGGAGTTTGGGAAGTTTGCTTCACGAAAGGAGCGGTGTATGTAGCTTAGGATGGGAAGTGAGGTACAAGATTATACTTGGTGCAGCTCAGGGTTTGGCTTACTTGCACCATGACTGTGTTCCTCCCATTGTTCATAGAGACATCAAGGCAAATAATATTCTGATTGGCCCTGATTTTGAACCTTACATTGGAGATTTCGGACTCGCTAAGCTTGTTGATGATGGCGACTTTGCTCGTTCTTCCAACACCATTGCTGGTTCCTATGGTTACATAGCTCCAGAATACGGATACTCAATGAAGATAACAGAGAAAAGCGACGTGTACAGCTATGGAGTCGTAGTGCTCGAGGTACTAACGGGTAAGCAACCAATCGATCCAACGATACCAGATGGACTCCACATAGTGGACTGGGTCAAGAAAATCAGAGACATACAAGTAATCGACCAAGGACTACAAGCAAGACCAGAGTCAGAGGTTGAAGAGATGATGCAAACGCTAGGAGTCGCGCTTTTATGCATTAATCCAATACCCGAAGACAGGCCTACAATGAAAGATGTGGCTGCTATGCTTAGTGAGATATGTCAAGAGAGAGAGGAATCGATGAAAGTTGATGGTTGCTCGGGAAGTTGTAACAATGGAAGAGAACGTGGCAAAGATGATTCGACTTCATCGGTTATGCAACAAACGGCTAAGTATTTGAGAAGTAGTAGCACGAGTTTCTCTGCGTCTTCTTTGCTTTACTCTTCTTCTTCTTCTGCTACTTCTAATGTTAGACCAAATCTTAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

1135

Amino Acids

123.61

Weight (kDa)

5.48

Isoelectric Point (pI)

37.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 38 - 77 6.4e-09 Leucine rich repeat N-terminal domain
LRR_14 PF23598 102 - 208 1.1e-06 Leucine-rich repeat region
LRR_14 PF23598 217 - 304 8.2e-10 Leucine-rich repeat region
LRR_8 PF13855 324 - 383 1.1e-07 Leucine rich repeat
LRR_8 PF13855 468 - 527 6.3e-07 Leucine rich repeat
LRR_14 PF23598 472 - 693 1.8e-16 Leucine-rich repeat region
PK_Tyr_Ser-Thr PF07714 788 - 1062 1e-41 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 788 - 1060 2.2e-40 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013816)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48940
fragaria_vesca FvH4_2g19620
malus_domestica MD10G1169800.v1.1
prunus_persica Prupe.8G207600_v2.0.a1
pyrus_communis pycom10g14630
rosa_chinensis RchiOBHm_Chr6g0285351
rosa_laevigata RLG00000012651
rosa_multiflora Rmu_co8152086.1_g000001 Rmu_co8221716.1_g000001 Rmu_sc0012287.1_g000004
rosa_roxburghii Rroxscaffold_7G00183330
rosa_rugosa Rorug06G0173900
rosa_samantha Rh6AG284500 Rh6BG285700 Rh6CG286800 Rh6DG279800
rosa_wichuraiana Rw6G024490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 1301, 1315
AccB7I CCANNNNNTGG 2 cut(s) 1172, 3022
AccBSI CCGCTC 1 cut(s) 2652
AccI GTMKAC 1 cut(s) 1543
AccII CGCG 3 cut(s) 1901, 2432, 3125
AccIII TCCGGA 1 cut(s) 1234
AciI CCGC 7 cut(s) 158, 1899, 2201, 2210, 2228, 2432, 2652
AclWI GGATC 6 cut(s) 502, 649, 793, 1306, 2539, 2987
AcoI YGGCCR 1 cut(s) 2447
AcsI RAATTY 2 cut(s) 1717, 1864
AcuI CTGAAG 4 cut(s) 308, 1454, 1751, 2535
AcyI GRCGYC 1 cut(s) 1137
AdeI CACNNNGTG 2 cut(s) 2144, 3022
AfaI GTAC 8 cut(s) 1629, 2343, 2399, 2460, 2556, 2684, 2942, 2970
AfiI CCNNNNNNNGG 6 cut(s) 521, 1172, 2807, 2903, 3022, 3156
AflII CTTAAG 1 cut(s) 1181
AflIII ACRYGT 2 cut(s) 2338, 2937
AgsI TTSAA 8 cut(s) 470, 896, 1265, 1583, 1625, 1726, 2798, 3098
AjiI CACGTC 1 cut(s) 2938
AjuI GAANNNNNNNTTGG 4 cut(s) 569, 601, 2790, 2822
AloI GAACNNNNNNTCC 2 cut(s) 1493, 1525
Alw21I GWGCWC 5 cut(s) 594, 1191, 1923, 2154, 2964
Alw26I GTCTC 9 cut(s) 72, 124, 274, 1642, 1749, 2267, 2493, 2751, 3039
Alw44I GTGCAC 1 cut(s) 2150
AlwI GGATC 6 cut(s) 502, 649, 793, 1306, 2539, 2987
AlwNI CAGNNNCTG 1 cut(s) 2276
Ama87I CYCGRG 2 cut(s) 2963, 3238
Aor13HI TCCGGA 1 cut(s) 1234
AoxI GGCC 5 cut(s) 212, 493, 2447, 2785, 3158
ApaLI GTGCAC 1 cut(s) 2150
ApeKI GCWGC 4 cut(s) 704, 1065, 2702, 3179
ApoI RAATTY 2 cut(s) 1717, 1864
AseI ATTAAT 1 cut(s) 3138
Asp700I GAANNNNTTC 2 cut(s) 1001, 1721
AspLEI GCGC 3 cut(s) 1903, 1963, 3127
AspS9I GGNCC 3 cut(s) 938, 1514, 2786
AsuC2I CCSGG 4 cut(s) 659, 1081, 1886, 2389
AsuHPI GGTGA 7 cut(s) 346, 443, 806, 1069, 1285, 1429, 2446
AvaI CYCGRG 2 cut(s) 2963, 3238
AvaII GGWCC 2 cut(s) 938, 1514
AxyI CCTNAGG 1 cut(s) 948
BaeGI GKGCMC 1 cut(s) 2154
BalI TGGCCA 1 cut(s) 2449
BanII GRGCYC 2 cut(s) 594, 1191
BauI CACGAG 1 cut(s) 3331
BbsI GAAGAC 3 cut(s) 163, 3159, 3339
Bbv12I GWGCWC 5 cut(s) 594, 1191, 1923, 2154, 2964
BbvI GCAGC 4 cut(s) 716, 1077, 2714, 3166
BccI CCATC 9 cut(s) 1022, 1200, 1370, 1868, 2059, 2664, 2834, 3002, 3224
BceAI ACGGC 1 cut(s) 3321
BcgI CGANNNNNNTGC 2 cut(s) 1940, 1974
BciVI GTATCC 1 cut(s) 2900
BcnI CCSGG 4 cut(s) 659, 1081, 1886, 2389
BcoDI GTCTC 9 cut(s) 72, 124, 274, 1642, 1749, 2267, 2493, 2751, 3039
BfmI CTRYAG 2 cut(s) 676, 1308
BfrI CTTAAG 1 cut(s) 1181
BfuAI ACCTGC 2 cut(s) 1301, 1315
BfuI GTATCC 1 cut(s) 2900
BglII AGATCT 2 cut(s) 600, 1834
BisI GCNGC 5 cut(s) 158, 705, 1066, 2703, 3180
BlpI GCTNAGC 2 cut(s) 1061, 2826
BlsI GCNGC 5 cut(s) 159, 706, 1067, 2704, 3181
BmcAI AGTACT 1 cut(s) 1629
Bme1390I CCNGG 4 cut(s) 659, 1081, 1886, 2389
Bme18I GGWCC 2 cut(s) 938, 1514
BmeT110I CYCGRG 2 cut(s) 2963, 3238
BmgBI CACGTC 1 cut(s) 2938
BmgT120I GGNCC 3 cut(s) 938, 1514, 2786
BmiI GGNNCC 2 cut(s) 1012, 2878
BmrFI CCNGG 4 cut(s) 659, 1081, 1886, 2389
BmrI ACTGGG 1 cut(s) 3037
BmsI GCATC 4 cut(s) 113, 900, 1545, 3096
BmuI ACTGGG 1 cut(s) 3037
BoxI GACNNNNGTC 2 cut(s) 204, 3085
BpiI GAAGAC 3 cut(s) 163, 3159, 3339
BpmI CTGGAG 5 cut(s) 743, 1403, 1535, 2298, 2880
Bpu10I CCTNAGC 3 cut(s) 1478, 2665, 2706
Bpu1102I GCTNAGC 2 cut(s) 1061, 2826
BpuEI CTTGAG 8 cut(s) 443, 524, 569, 632, 671, 1585, 1876, 2330
BpuMI CCSGG 4 cut(s) 659, 1081, 1886, 2389
Bsa29I ATCGAT 4 cut(s) 405, 2534, 2991, 3218
BsaHI GRCGYC 1 cut(s) 1137
BsaJI CCNNGG 2 cut(s) 934, 3064
BsaXI ACNNNNNCTCC 4 cut(s) 1493, 1523, 2943, 2973
Bsc4I CCNNNNNNNGG 6 cut(s) 521, 1172, 2807, 2903, 3022, 3156
Bse118I RCCGGY 1 cut(s) 1698
Bse1I ACTGG 7 cut(s) 760, 1386, 1517, 1660, 2281, 2450, 3032
Bse21I CCTNAGG 1 cut(s) 948
Bse3DI GCAATG 2 cut(s) 1842, 2868
BseAI TCCGGA 1 cut(s) 1234
BseCI ATCGAT 4 cut(s) 405, 2534, 2991, 3218
BseDI CCNNGG 2 cut(s) 934, 3064
BseGI GGATG 5 cut(s) 1014, 1211, 1827, 2573, 2675
BseLI CCNNNNNNNGG 6 cut(s) 521, 1172, 2807, 2903, 3022, 3156
BseMI GCAATG 2 cut(s) 1842, 2868
BseNI ACTGG 7 cut(s) 760, 1386, 1517, 1660, 2281, 2450, 3032
BseRI GAGGAG 5 cut(s) 82, 223, 677, 965, 1829
BseSI GKGCMC 1 cut(s) 2154
BseXI GCAGC 4 cut(s) 716, 1077, 2714, 3166
BsgI GTGCAG 4 cut(s) 1093, 1381, 1741, 2721
Bsh1236I CGCG 3 cut(s) 1901, 2432, 3125
BshFI GGCC 5 cut(s) 214, 495, 2449, 2787, 3160
BshVI ATCGAT 4 cut(s) 405, 2534, 2991, 3218
BsiHKAI GWGCWC 5 cut(s) 594, 1191, 1923, 2154, 2964
BsiHKCI CYCGRG 2 cut(s) 2963, 3238
BslI CCNNNNNNNGG 6 cut(s) 521, 1172, 2807, 2903, 3022, 3156
BsmAI GTCTC 9 cut(s) 72, 124, 274, 1642, 1749, 2267, 2493, 2751, 3039
BsmBI CGTCTC 2 cut(s) 274, 1749
BsnI GGCC 5 cut(s) 214, 495, 2449, 2787, 3160
BsoBI CYCGRG 2 cut(s) 2963, 3238
Bsp1286I GDGCHC 5 cut(s) 594, 1191, 1923, 2154, 2964
Bsp13I TCCGGA 1 cut(s) 1234
Bsp1407I TGTACA 2 cut(s) 2397, 2940
Bsp1720I GCTNAGC 2 cut(s) 1061, 2826
BspACI CCGC 7 cut(s) 158, 1899, 2201, 2210, 2228, 2432, 2652
BspANI GGCC 5 cut(s) 214, 495, 2449, 2787, 3160
BspDI ATCGAT 4 cut(s) 405, 2534, 2991, 3218
BspEI TCCGGA 1 cut(s) 1234
BspFNI CGCG 3 cut(s) 1901, 2432, 3125
BspHI TCATGA 1 cut(s) 963
BspLI GGNNCC 2 cut(s) 1012, 2878
BspMAI CTGCAG 1 cut(s) 1312
BspMI ACCTGC 2 cut(s) 1301, 1315
BspPI GGATC 6 cut(s) 502, 649, 793, 1306, 2539, 2987
BspTI CTTAAG 1 cut(s) 1181
BsrBI CCGCTC 1 cut(s) 2652
BsrDI GCAATG 2 cut(s) 1842, 2868
BsrFI RCCGGY 1 cut(s) 1698
BsrGI TGTACA 2 cut(s) 2397, 2940
BsrI ACTGG 7 cut(s) 760, 1386, 1517, 1660, 2281, 2450, 3032
BssAI RCCGGY 1 cut(s) 1698
BssECI CCNNGG 2 cut(s) 934, 3064
BssNI GRCGYC 1 cut(s) 1137
BssSI CACGAG 1 cut(s) 3331
BssT1I CCWWGG 1 cut(s) 3064
Bst2BI CACGAG 1 cut(s) 3331
Bst4CI ACNGT 8 cut(s) 43, 165, 677, 2123, 2130, 2332, 2458, 2735
Bst6I CTCTTC 5 cut(s) 1584, 1645, 3093, 3253, 3367
BstACI GRCGYC 1 cut(s) 1137
BstAFI CTTAAG 1 cut(s) 1181
BstAPI GCANNNNNTGC 1 cut(s) 1939
BstAUI TGTACA 2 cut(s) 2397, 2940
BstC8I GCNNGC 2 cut(s) 755, 869
BstDSI CCRYGG 1 cut(s) 934
BstF5I GGATG 5 cut(s) 1014, 1211, 1827, 2573, 2675
BstFNI CGCG 3 cut(s) 1901, 2432, 3125
BstHHI GCGC 3 cut(s) 1903, 1963, 3127
BstMAI GTCTC 9 cut(s) 72, 124, 274, 1642, 1749, 2267, 2493, 2751, 3039
BstMWI GCNNNNNNNGC 6 cut(s) 919, 1186, 1216, 1939, 2149, 2207
BstNSI RCATGY 2 cut(s) 1942, 2342
BstPAI GACNNNNGTC 2 cut(s) 204, 3085
BstSCI CCNGG 4 cut(s) 657, 1079, 1884, 2387
BstSFI CTRYAG 2 cut(s) 676, 1308
BstSLI GKGCMC 1 cut(s) 2154
BstUI CGCG 3 cut(s) 1901, 2432, 3125
BstV1I GCAGC 4 cut(s) 716, 1077, 2714, 3166
BstV2I GAAGAC 3 cut(s) 163, 3159, 3339
BstX2I RGATCY 5 cut(s) 507, 600, 654, 798, 1834
BstXI CCANNNNNNTGG 1 cut(s) 210
BstYI RGATCY 5 cut(s) 507, 600, 654, 798, 1834
Bsu15I ATCGAT 4 cut(s) 405, 2534, 2991, 3218
Bsu36I CCTNAGG 1 cut(s) 948
BsuI GTATCC 1 cut(s) 2900
BsuRI GGCC 5 cut(s) 214, 495, 2449, 2787, 3160
BsuTUI ATCGAT 4 cut(s) 405, 2534, 2991, 3218
BtgI CCRYGG 1 cut(s) 934
BtgZI GCGATG 1 cut(s) 2413
BtrI CACGTC 1 cut(s) 2938
BtsCI GGATG 5 cut(s) 1014, 1211, 1827, 2573, 2675
BtsI GCAGTG 1 cut(s) 1753
BtsIMutI CAGTG 3 cut(s) 1379, 1753, 2457
BveI ACCTGC 2 cut(s) 1301, 1315
Cac8I GCNNGC 2 cut(s) 755, 869
CaiI CAGNNNCTG 1 cut(s) 2276
CciI TCATGA 1 cut(s) 963
CfoI GCGC 3 cut(s) 1903, 1963, 3127
Cfr10I RCCGGY 1 cut(s) 1698
Cfr13I GGNCC 3 cut(s) 938, 1514, 2786
ClaI ATCGAT 4 cut(s) 405, 2534, 2991, 3218
CseI GACGC 2 cut(s) 1145, 3333
Csp6I GTAC 8 cut(s) 1628, 2342, 2398, 2459, 2555, 2683, 2941, 2969
CviAII CATG 6 cut(s) 204, 964, 1939, 2295, 2339, 2729
CviQI GTAC 8 cut(s) 1628, 2342, 2398, 2459, 2555, 2683, 2941, 2969
DraI TTTAAA 1 cut(s) 483
DraIII CACNNNGTG 2 cut(s) 2144, 3022
EaeI YGGCCR 1 cut(s) 2447
Eam1104I CTCTTC 5 cut(s) 1584, 1645, 3093, 3253, 3367
EarI CTCTTC 5 cut(s) 1584, 1645, 3093, 3253, 3367
Ecl136II GAGCTC 2 cut(s) 592, 1189
Eco130I CCWWGG 1 cut(s) 3064
Eco147I AGGCCT 1 cut(s) 3160
Eco24I GRGCYC 2 cut(s) 594, 1191
Eco47I GGWCC 2 cut(s) 938, 1514
Eco53kI GAGCTC 2 cut(s) 592, 1189
Eco57I CTGAAG 4 cut(s) 308, 1454, 1751, 2535
Eco81I CCTNAGG 1 cut(s) 948
Eco88I CYCGRG 2 cut(s) 2963, 3238
EcoICRI GAGCTC 2 cut(s) 592, 1189
EcoRI GAATTC 2 cut(s) 1717, 1864
EcoT14I CCWWGG 1 cut(s) 3064
EcoT22I ATGCAT 1 cut(s) 3137
EcoT38I GRGCYC 2 cut(s) 594, 1191
ErhI CCWWGG 1 cut(s) 3064
Esp3I CGTCTC 2 cut(s) 274, 1749
FaeI CATG 6 cut(s) 207, 967, 1942, 2298, 2342, 2732
FalI AAGNNNNNCTT 2 cut(s) 1575, 1607
FatI CATG 6 cut(s) 203, 963, 1938, 2294, 2338, 2728
FblI GTMKAC 1 cut(s) 1543
Fnu4HI GCNGC 5 cut(s) 158, 705, 1066, 2703, 3180
FokI GGATG 5 cut(s) 1001, 1218, 1814, 2580, 2682
FriOI GRGCYC 2 cut(s) 594, 1191
Fsp4HI GCNGC 5 cut(s) 158, 705, 1066, 2703, 3180
GlaI GCGC 3 cut(s) 1902, 1962, 3126
GluI GCNGC 5 cut(s) 158, 705, 1066, 2703, 3180
GsuI CTGGAG 5 cut(s) 743, 1403, 1535, 2298, 2880
HaeIII GGCC 5 cut(s) 214, 495, 2449, 2787, 3160
HgaI GACGC 2 cut(s) 1145, 3333
HhaI GCGC 3 cut(s) 1903, 1963, 3127
Hin1I GRCGYC 1 cut(s) 1137
Hin1II CATG 6 cut(s) 207, 967, 1942, 2298, 2342, 2732
Hin6I GCGC 3 cut(s) 1901, 1961, 3125
HinP1I GCGC 3 cut(s) 1901, 1961, 3125
HincII GTYRAC 3 cut(s) 746, 1614, 2133
HindII GTYRAC 3 cut(s) 746, 1614, 2133
HindIII AAGCTT 5 cut(s) 890, 970, 1115, 1619, 2828
HpaI GTTAAC 2 cut(s) 1614, 2133
HphI GGTGA 7 cut(s) 346, 443, 806, 1069, 1285, 1429, 2446
Hpy99I CGWCG 1 cut(s) 2939
HpyAV CCTTC 7 cut(s) 198, 450, 1101, 1217, 1749, 2063, 2354
HpyCH4III ACNGT 8 cut(s) 43, 165, 677, 2123, 2130, 2332, 2458, 2735
HpyCH4IV ACGT 2 cut(s) 2937, 3265
HpyF10VI GCNNNNNNNGC 6 cut(s) 919, 1186, 1216, 1939, 2149, 2207
HpySE526I ACGT 2 cut(s) 2937, 3265
Hsp92I GRCGYC 1 cut(s) 1137
Hsp92II CATG 6 cut(s) 207, 967, 1942, 2298, 2342, 2732
HspAI GCGC 3 cut(s) 1901, 1961, 3125
Kpn2I TCCGGA 1 cut(s) 1234
KspAI GTTAAC 2 cut(s) 1614, 2133
Lsp1109I GCAGC 4 cut(s) 716, 1077, 2714, 3166
LweI GCATC 4 cut(s) 113, 900, 1545, 3096
MaeII ACGT 2 cut(s) 2937, 3265
MbiI CCGCTC 1 cut(s) 2652
MflI RGATCY 5 cut(s) 507, 600, 654, 798, 1834
MhlI GDGCHC 5 cut(s) 594, 1191, 1923, 2154, 2964
MlsI TGGCCA 1 cut(s) 2449
MluCI AATT 5 cut(s) 1285, 1537, 1717, 1864, 2300
MluNI TGGCCA 1 cut(s) 2449
MmeI TCCRAC 5 cut(s) 366, 567, 2555, 2886, 3020
Mox20I TGGCCA 1 cut(s) 2449
Mph1103I ATGCAT 1 cut(s) 3137
MroI TCCGGA 1 cut(s) 1234
MroXI GAANNNNTTC 2 cut(s) 1001, 1721
MscI TGGCCA 1 cut(s) 2449
MslI CAYNNNNRTG 3 cut(s) 208, 2432, 2733
Msp20I TGGCCA 1 cut(s) 2449
MspA1I CMGCKG 3 cut(s) 2050, 2201, 2513
MspCI CTTAAG 1 cut(s) 1181
MspR9I CCNGG 4 cut(s) 659, 1081, 1886, 2389
MssI GTTTAAAC 1 cut(s) 483
MvnI CGCG 3 cut(s) 1901, 2432, 3125
MwoI GCNNNNNNNGC 6 cut(s) 919, 1186, 1216, 1939, 2149, 2207
NciI CCSGG 4 cut(s) 659, 1081, 1886, 2389
NlaIII CATG 6 cut(s) 207, 967, 1942, 2298, 2342, 2732
NlaIV GGNNCC 2 cut(s) 1012, 2878
NmeAIII GCCGAG 1 cut(s) 501
NmuCI GTSAC 4 cut(s) 1278, 1751, 2194, 2452
NsiI ATGCAT 1 cut(s) 3137
NspI RCATGY 2 cut(s) 1942, 2342
PaeR7I CTCGAG 1 cut(s) 2963
PagI TCATGA 1 cut(s) 963
PceI AGGCCT 1 cut(s) 3160
PciI ACATGT 1 cut(s) 2338
PcsI WCGNNNNNNNCGW 3 cut(s) 161, 528, 2961
PdmI GAANNNNTTC 2 cut(s) 1001, 1721
PflFI GACNNNGTC 1 cut(s) 3029
PflMI CCANNNNNTGG 2 cut(s) 1172, 3022
PfoI TCCNGGA 3 cut(s) 657, 1884, 2387
PkrI GCNGC 5 cut(s) 159, 706, 1067, 2704, 3181
PmeI GTTTAAAC 1 cut(s) 483
PscI ACATGT 1 cut(s) 2338
PshAI GACNNNNGTC 2 cut(s) 204, 3085
PshBI ATTAAT 1 cut(s) 3138
Psp124BI GAGCTC 2 cut(s) 594, 1191
PspN4I GGNNCC 2 cut(s) 1012, 2878
PspPI GGNCC 3 cut(s) 938, 1514, 2786
PspXI VCTCGAGB 1 cut(s) 2963
PstI CTGCAG 1 cut(s) 1312
PstNI CAGNNNCTG 1 cut(s) 2276
PsuI RGATCY 5 cut(s) 507, 600, 654, 798, 1834
PsyI GACNNNGTC 1 cut(s) 3029
PvuII CAGCTG 2 cut(s) 2050, 2513
RsaI GTAC 8 cut(s) 1629, 2343, 2399, 2460, 2556, 2684, 2942, 2970
RsaNI GTAC 8 cut(s) 1628, 2342, 2398, 2459, 2555, 2683, 2941, 2969
RseI CAYNNNNRTG 3 cut(s) 208, 2432, 2733
SacI GAGCTC 2 cut(s) 594, 1191
SatI GCNGC 5 cut(s) 158, 705, 1066, 2703, 3180
Sau96I GGNCC 3 cut(s) 938, 1514, 2786
SbfI CCTGCAGG 1 cut(s) 1312
ScaI AGTACT 1 cut(s) 1629
ScrFI CCNGG 4 cut(s) 659, 1081, 1886, 2389
SdaI CCTGCAGG 1 cut(s) 1312
SduI GDGCHC 5 cut(s) 594, 1191, 1923, 2154, 2964
SfaNI GCATC 4 cut(s) 113, 900, 1545, 3096
SfcI CTRYAG 2 cut(s) 676, 1308
Sfr274I CTCGAG 1 cut(s) 2963
SinI GGWCC 2 cut(s) 938, 1514
SlaI CTCGAG 1 cut(s) 2963
SmiMI CAYNNNNRTG 3 cut(s) 208, 2432, 2733
Sse8387I CCTGCAGG 1 cut(s) 1312
Sse9I AATT 5 cut(s) 1285, 1537, 1717, 1864, 2300
SseBI AGGCCT 1 cut(s) 3160
SsiI CCGC 7 cut(s) 158, 1899, 2201, 2210, 2228, 2432, 2652
SspI AATATT 2 cut(s) 1231, 2776
SstI GAGCTC 2 cut(s) 594, 1191
StuI AGGCCT 1 cut(s) 3160
StyD4I CCNGG 4 cut(s) 657, 1079, 1884, 2387
StyI CCWWGG 1 cut(s) 3064
TaaI ACNGT 8 cut(s) 43, 165, 677, 2123, 2130, 2332, 2458, 2735
TaiI ACGT 2 cut(s) 2940, 3268
TaqII GACCGA 1 cut(s) 1739
TasI AATT 5 cut(s) 1285, 1537, 1717, 1864, 2300
TatI WGTACW 4 cut(s) 1627, 2341, 2397, 2940
TauI GCSGC 1 cut(s) 160
TscAI CASTG 3 cut(s) 1386, 1760, 2457
TseFI GTSAC 4 cut(s) 1278, 1751, 2194, 2452
TseI GCWGC 4 cut(s) 704, 1065, 2702, 3179
Tsp45I GTSAC 4 cut(s) 1278, 1751, 2194, 2452
TspGWI ACGGA 3 cut(s) 951, 1906, 2919
TspRI CASTG 3 cut(s) 1386, 1760, 2457
Tth111I GACNNNGTC 1 cut(s) 3029
Van91I CCANNNNNTGG 2 cut(s) 1172, 3022
Vha464I CTTAAG 1 cut(s) 1181
VneI GTGCAC 1 cut(s) 2150
VpaK11BI GGWCC 2 cut(s) 938, 1514
VspI ATTAAT 1 cut(s) 3138
XapI RAATTY 2 cut(s) 1717, 1864
XbaI TCTAGA 2 cut(s) 1837, 1972
XceI RCATGY 2 cut(s) 1942, 2342
XhoI CTCGAG 1 cut(s) 2963
XmiI GTMKAC 1 cut(s) 1543
XmnI GAANNNNTTC 2 cut(s) 1001, 1721
ZrmI AGTACT 1 cut(s) 1629
Zsp2I ATGCAT 1 cut(s) 3137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.