Rmu_co8221716.1_g000001
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8221716.1
OG0013816
Physical Location & Seq
Forward (+)
1 .. 741
741 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8221716.1_g000001.1.cds

Sequence Viewer

Length: 611 bp
tgcattgctgattttgggcttgccaagctcgttgatgaaggagattttgctcggtcctccaacacggttgcaggttcttatggctacattgctcctgagtatggatactcaatgaagataacagagaaaagcgatgtgtacagctacggcgtagttgtgctagaagtgctaacagggaagcaaccaattgatccaaccataccagatggactccacattgtggattgggtaaggcagaagagagggggagttgaggtacttgatcaaagcttacgagcacgaccagaacccgagattgaggaaatgctgcagacattaggtgtggcattgctgtgcattaaccctaccccggatgacagaccaaccatgaaagatgtagcagcaatgctcaaagagattaggcaggagagagaggagtgcatgaaagctaacatgaggcttctcaatgggtccaattctgcaaatgatcatggacaagaaactatggtcagttgcaatggaggaacatcatcagctatggtgaagcaaccacatccataccctccaacaagtaccagcacaagtttctctgcttcctcattgctatacacttcatcttccaatgtcaaaac
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

204

Amino Acids

22.21

Weight (kDa)

5.0

Isoelectric Point (pI)

42.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013816)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48940
fragaria_vesca FvH4_2g19620
malus_domestica MD10G1169800.v1.1
prunus_persica Prupe.8G207600_v2.0.a1
pyrus_communis pycom10g14630
rosa_chinensis RchiOBHm_Chr6g0285351
rosa_laevigata RLG00000012651
rosa_multiflora Rmu_co8152086.1_g000001 Rmu_co8221716.1_g000001 Rmu_sc0012287.1_g000004
rosa_roxburghii Rroxscaffold_7G00183330
rosa_rugosa Rorug06G0173900
rosa_samantha Rh6AG284500 Rh6BG285700 Rh6CG286800 Rh6DG279800
rosa_wichuraiana Rw6G024490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 62
AccB7I CCANNNNNTGG 1 cut(s) 220
AclWI GGATC 1 cut(s) 185
AdeI CACNNNGTG 1 cut(s) 220
AfaI GTAC 3 cut(s) 140, 258, 553
AfiI CCNNNNNNNGG 3 cut(s) 101, 220, 349
AluBI AGCT 5 cut(s) 28, 144, 270, 428, 515
AluI AGCT 5 cut(s) 28, 144, 270, 428, 515
Alw21I GWGCWC 1 cut(s) 280
AlwI GGATC 1 cut(s) 185
Ama87I CYCGRG 1 cut(s) 290
ApeKI GCWGC 2 cut(s) 307, 380
AspS9I GGNCC 2 cut(s) 54, 450
AsuC2I CCSGG 1 cut(s) 350
AsuHPI GGTGA 1 cut(s) 532
AvaI CYCGRG 1 cut(s) 290
AvaII GGWCC 2 cut(s) 54, 450
Bbv12I GWGCWC 1 cut(s) 280
BbvI GCAGC 2 cut(s) 294, 392
BccI CCATC 1 cut(s) 200
BceAI ACGGC 1 cut(s) 163
BciVI GTATCC 1 cut(s) 98
BclI TGATCA 2 cut(s) 262, 466
BcnI CCSGG 1 cut(s) 350
BfaI CTAG 1 cut(s) 161
BfmI CTRYAG 1 cut(s) 308
BfuAI ACCTGC 1 cut(s) 62
BfuI GTATCC 1 cut(s) 98
BisI GCNGC 2 cut(s) 308, 381
BlsI GCNGC 2 cut(s) 309, 382
Bme1390I CCNGG 1 cut(s) 350
Bme18I GGWCC 2 cut(s) 54, 450
BmeT110I CYCGRG 1 cut(s) 290
BmgT120I GGNCC 2 cut(s) 54, 450
BmiI GGNNCC 1 cut(s) 451
BmrFI CCNGG 1 cut(s) 350
BpuMI CCSGG 1 cut(s) 350
BsaJI CCNNGG 1 cut(s) 348
BsaXI ACNNNNNCTCC 2 cut(s) 240, 270
Bsc4I CCNNNNNNNGG 3 cut(s) 101, 220, 349
Bse3DI GCAATG 5 cut(s) 87, 326, 390, 502, 578
BseDI CCNNGG 1 cut(s) 348
BseGI GGATG 2 cut(s) 358, 532
BseLI CCNNNNNNNGG 3 cut(s) 101, 220, 349
BseMI GCAATG 5 cut(s) 87, 326, 390, 502, 578
BseMII CTCAG 1 cut(s) 87
BseRI GAGGAG 1 cut(s) 428
BseXI GCAGC 2 cut(s) 294, 392
BsiHKAI GWGCWC 1 cut(s) 280
BsiHKCI CYCGRG 1 cut(s) 290
BsiSI CCGG 1 cut(s) 350
BslI CCNNNNNNNGG 3 cut(s) 101, 220, 349
BsoBI CYCGRG 1 cut(s) 290
Bsp1286I GDGCHC 1 cut(s) 280
Bsp1407I TGTACA 1 cut(s) 138
Bsp143I GATC 3 cut(s) 190, 262, 466
BspCNI CTCAG 1 cut(s) 88
BspLI GGNNCC 1 cut(s) 451
BspMAI CTGCAG 1 cut(s) 312
BspMI ACCTGC 1 cut(s) 62
BspPI GGATC 1 cut(s) 185
BsrDI GCAATG 5 cut(s) 87, 326, 390, 502, 578
BsrGI TGTACA 1 cut(s) 138
BssECI CCNNGG 1 cut(s) 348
BssMI GATC 3 cut(s) 190, 262, 466
Bst4CI ACNGT 1 cut(s) 67
Bst6I CTCTTC 1 cut(s) 233
BstAUI TGTACA 1 cut(s) 138
BstC8I GCNNGC 1 cut(s) 21
BstDEI CTNAG 1 cut(s) 96
BstF5I GGATG 2 cut(s) 358, 532
BstKTI GATC 3 cut(s) 193, 265, 469
BstMBI GATC 3 cut(s) 190, 262, 466
BstMWI GCNNNNNNNGC 2 cut(s) 25, 166
BstSCI CCNGG 1 cut(s) 348
BstSFI CTRYAG 1 cut(s) 308
BstV1I GCAGC 2 cut(s) 294, 392
BsuI GTATCC 1 cut(s) 98
BtgZI GCGATG 1 cut(s) 147
BtsCI GGATG 2 cut(s) 358, 532
BveI ACCTGC 1 cut(s) 62
Cac8I GCNNGC 1 cut(s) 21
Cfr13I GGNCC 2 cut(s) 54, 450
Csp6I GTAC 3 cut(s) 139, 257, 552
CviAII CATG 4 cut(s) 367, 421, 433, 470
CviJI RGCY 8 cut(s) 19, 28, 84, 144, 270, 428, 439, 515
CviKI_1 RGCY 8 cut(s) 19, 28, 84, 144, 270, 428, 439, 515
CviQI GTAC 3 cut(s) 139, 257, 552
DdeI CTNAG 1 cut(s) 96
DpnI GATC 3 cut(s) 192, 264, 468
DpnII GATC 3 cut(s) 190, 262, 466
DraIII CACNNNGTG 1 cut(s) 220
Eam1104I CTCTTC 1 cut(s) 233
EarI CTCTTC 1 cut(s) 233
Eco47I GGWCC 2 cut(s) 54, 450
Eco88I CYCGRG 1 cut(s) 290
FaeI CATG 4 cut(s) 370, 424, 436, 473
FatI CATG 4 cut(s) 366, 420, 432, 469
FbaI TGATCA 2 cut(s) 262, 466
Fnu4HI GCNGC 2 cut(s) 308, 381
FokI GGATG 2 cut(s) 365, 519
Fsp4HI GCNGC 2 cut(s) 308, 381
FspBI CTAG 1 cut(s) 161
GluI GCNGC 2 cut(s) 308, 381
HapII CCGG 1 cut(s) 350
Hin1II CATG 4 cut(s) 370, 424, 436, 473
HindIII AAGCTT 1 cut(s) 268
HinfI GANTC 1 cut(s) 210
HpaII CCGG 1 cut(s) 350
HphI GGTGA 1 cut(s) 532
Hpy166II GTNNAC 1 cut(s) 139
Hpy188III TCNNGA 1 cut(s) 95
Hpy8I GTNNAC 1 cut(s) 139
HpyAV CCTTC 1 cut(s) 32
HpyCH4III ACNGT 1 cut(s) 67
HpyCH4V TGCA 7 cut(s) 3, 71, 310, 336, 420, 461, 495
HpyF10VI GCNNNNNNNGC 2 cut(s) 25, 166
HpyF3I CTNAG 1 cut(s) 96
Hsp92II CATG 4 cut(s) 370, 424, 436, 473
Ksp22I TGATCA 2 cut(s) 262, 466
Kzo9I GATC 3 cut(s) 190, 262, 466
LmnI GCTCC 1 cut(s) 97
LpnPI CCDG 8 cut(s) 57, 108, 159, 216, 297, 363, 389, 568
Lsp1109I GCAGC 2 cut(s) 294, 392
MaeI CTAG 1 cut(s) 161
MalI GATC 3 cut(s) 192, 264, 468
MboI GATC 3 cut(s) 190, 262, 466
MboII GAAGA 3 cut(s) 127, 250, 588
MfeI CAATTG 1 cut(s) 186
MhlI GDGCHC 1 cut(s) 280
MluCI AATT 2 cut(s) 186, 454
MlyI GAGTC 1 cut(s) 204
MmeI TCCRAC 3 cut(s) 84, 218, 569
MnlI CCTC 9 cut(s) 67, 236, 247, 292, 406, 429, 494, 552, 586
MseI TTAA 1 cut(s) 339
MslI CAYNNNNRTG 1 cut(s) 331
MspI CCGG 1 cut(s) 350
MspR9I CCNGG 1 cut(s) 350
MunI CAATTG 1 cut(s) 186
MwoI GCNNNNNNNGC 2 cut(s) 25, 166
NciI CCSGG 1 cut(s) 350
NdeII GATC 3 cut(s) 190, 262, 466
NlaIII CATG 4 cut(s) 370, 424, 436, 473
NlaIV GGNNCC 1 cut(s) 451
PflMI CCANNNNNTGG 1 cut(s) 220
PkrI GCNGC 2 cut(s) 309, 382
PleI GAGTC 1 cut(s) 204
PpsI GAGTC 1 cut(s) 204
PspN4I GGNNCC 1 cut(s) 451
PspPI GGNCC 2 cut(s) 54, 450
PstI CTGCAG 1 cut(s) 312
RsaI GTAC 3 cut(s) 140, 258, 553
RsaNI GTAC 3 cut(s) 139, 257, 552
RseI CAYNNNNRTG 1 cut(s) 331
SaqAI TTAA 1 cut(s) 339
SatI GCNGC 2 cut(s) 308, 381
Sau3AI GATC 3 cut(s) 190, 262, 466
Sau96I GGNCC 2 cut(s) 54, 450
SchI GAGTC 1 cut(s) 204
ScrFI CCNGG 1 cut(s) 350
SduI GDGCHC 1 cut(s) 280
SetI ASST 8 cut(s) 30, 76, 146, 258, 272, 322, 430, 517
SfcI CTRYAG 1 cut(s) 308
SinI GGWCC 2 cut(s) 54, 450
SmiMI CAYNNNNRTG 1 cut(s) 331
Sse9I AATT 2 cut(s) 186, 454
SspMI CTAG 1 cut(s) 161
StyD4I CCNGG 1 cut(s) 348
TaaI ACNGT 1 cut(s) 67
TaqII GACCGA 1 cut(s) 42
TasI AATT 2 cut(s) 186, 454
TatI WGTACW 1 cut(s) 138
Tru1I TTAA 1 cut(s) 339
Tru9I TTAA 1 cut(s) 339
TseI GCWGC 2 cut(s) 307, 380
TspDTI ATGAA 5 cut(s) 51, 128, 383, 437, 582
Van91I CCANNNNNTGG 1 cut(s) 220
VpaK11BI GGWCC 2 cut(s) 54, 450
XspI CTAG 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.