AT5G49120

zinc-finger of the FCS-type, C2-C2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0015420
Physical Location & Seq
Reverse (-)
19908614 .. 19909452
839 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G49120.1

Sequence Viewer

Length: 453 bp
ATGGTGGGACTAAGTATTGTTTTGGAGATGACTAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAAAAACCCTCTTAGTGAAGGTGTCTTAATTAGTCCTAAAGTCGTCAACAAAGCCAACATTATTGTCACCACCGCCGTGACGACGGACACGACTAATCTCCGTCGTTGTTATCAAGATTCTGGATTTCTCGAACATTGTTTTCTCTGTAGACGAAAACTTCTTCCAGCGAAAGATATCTACATGTATAAAGGTGATAGAGCGTTTTGTAGCGTGGAGTGTAGATCGAAGCAGATGATTATGGACGAAGAAGAAAGCTTGAGAAGAGAGTATTGTTCTTTAATGGATGTTAAGAAGAAGAAATTTGATTCTCCGGCGACTGCGCCGTCGCGTTACCGTCGAGATCCGAGAAACCAAGCAGGCGGTTTCGCTTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-FLZ

Protein Analysis

150

Amino Acids

17.17

Weight (kDa)

9.2

Isoelectric Point (pI)

60.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-FLZ PF04570 63 - 109 1.5e-22 zinc-finger of the FCS-type, C2-C2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015420)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G49120
fragaria_vesca FvH4_4g18540
malus_domestica MD13G1166200.v1.1 MD16G1166000.v1.1
prunus_persica Prupe.1G132700_v2.0.a1
pyrus_communis pycom13g14200 pycom16g14040
rosa_chinensis RchiOBHm_Chr4g0423101
rosa_laevigata RLG00000007585
rosa_roxburghii Rroxscaffold_5G00365180
rosa_rugosa Rorug04G0183900
rosa_samantha Rh4AG243400 Rh4BG248100 Rh4CG258000 Rh4DG243300
rosa_wichuraiana Rw4G021000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 400
AccI GTMKAC 1 cut(s) 226
AccII CGCG 1 cut(s) 406
AciI CCGC 2 cut(s) 150, 438
AclWI GGATC 1 cut(s) 413
AcsI RAATTY 1 cut(s) 377
AflIII ACRYGT 1 cut(s) 258
AleI CACNNNNGTG 1 cut(s) 152
AluBI AGCT 1 cut(s) 333
AluI AGCT 1 cut(s) 333
AlwI GGATC 1 cut(s) 413
ApoI RAATTY 1 cut(s) 377
AspLEI GCGC 1 cut(s) 400
AsuHPI GGTGA 2 cut(s) 136, 281
BceAI ACGGC 2 cut(s) 137, 385
BfmI CTRYAG 1 cut(s) 223
BpuEI CTTGAG 1 cut(s) 355
BseGI GGATG 1 cut(s) 367
Bsh1236I CGCG 1 cut(s) 406
BsiSI CCGG 1 cut(s) 389
BslFI GGGAC 1 cut(s) 21
BsmFI GGGAC 1 cut(s) 21
Bsp143I GATC 2 cut(s) 299, 418
BspACI CCGC 2 cut(s) 150, 438
BspFNI CGCG 1 cut(s) 406
BspPI GGATC 1 cut(s) 413
BssMI GATC 2 cut(s) 299, 418
Bst4CI ACNGT 1 cut(s) 413
Bst6I CTCTTC 1 cut(s) 334
BstC8I GCNNGC 1 cut(s) 436
BstDEI CTNAG 2 cut(s) 11, 89
BstF5I GGATG 1 cut(s) 367
BstFNI CGCG 1 cut(s) 406
BstHHI GCGC 1 cut(s) 400
BstKTI GATC 2 cut(s) 302, 421
BstMBI GATC 2 cut(s) 299, 418
BstNSI RCATGY 1 cut(s) 262
BstSFI CTRYAG 1 cut(s) 223
BstUI CGCG 1 cut(s) 406
BstX2I RGATCY 1 cut(s) 418
BstYI RGATCY 1 cut(s) 418
BtsCI GGATG 1 cut(s) 367
Cac8I GCNNGC 1 cut(s) 436
CfoI GCGC 1 cut(s) 400
CviAII CATG 1 cut(s) 259
CviJI RGCY 2 cut(s) 131, 333
CviKI_1 RGCY 2 cut(s) 131, 333
DdeI CTNAG 2 cut(s) 11, 89
DpnI GATC 2 cut(s) 301, 420
DpnII GATC 2 cut(s) 299, 418
DrdI GACNNNNNNGTC 1 cut(s) 400
DseDI GACNNNNNNGTC 1 cut(s) 400
Eam1104I CTCTTC 1 cut(s) 334
EarI CTCTTC 1 cut(s) 334
Eco32I GATATC 1 cut(s) 253
EcoRV GATATC 1 cut(s) 253
FaeI CATG 1 cut(s) 262
FaiI YATR 3 cut(s) 260, 264, 317
FaqI GGGAC 1 cut(s) 21
FatI CATG 1 cut(s) 258
FblI GTMKAC 1 cut(s) 226
FokI GGATG 1 cut(s) 374
GlaI GCGC 1 cut(s) 399
HapII CCGG 1 cut(s) 389
HhaI GCGC 1 cut(s) 400
Hin1II CATG 1 cut(s) 262
Hin6I GCGC 1 cut(s) 398
HinP1I GCGC 1 cut(s) 398
HincII GTYRAC 1 cut(s) 124
HindII GTYRAC 1 cut(s) 124
HindIII AAGCTT 1 cut(s) 331
HinfI GANTC 2 cut(s) 194, 383
HpaII CCGG 1 cut(s) 389
HphI GGTGA 2 cut(s) 136, 281
Hpy166II GTNNAC 2 cut(s) 124, 227
Hpy188I TCNGA 1 cut(s) 423
Hpy188III TCNNGA 4 cut(s) 191, 198, 206, 416
Hpy8I GTNNAC 2 cut(s) 124, 227
Hpy99I CGWCG 4 cut(s) 163, 183, 406, 417
HpyAV CCTTC 1 cut(s) 89
HpyCH4III ACNGT 1 cut(s) 413
HpyF3I CTNAG 2 cut(s) 11, 89
Hsp92II CATG 1 cut(s) 262
HspAI GCGC 1 cut(s) 398
Kzo9I GATC 2 cut(s) 299, 418
LpnPI CCDG 4 cut(s) 183, 255, 402, 420
MaeIII GTNAC 3 cut(s) 142, 154, 407
MalI GATC 2 cut(s) 301, 420
MboI GATC 2 cut(s) 299, 418
MboII GAAGA 6 cut(s) 230, 335, 338, 351, 382, 385
MflI RGATCY 1 cut(s) 418
MluCI AATT 2 cut(s) 105, 377
MnlI CCTC 1 cut(s) 96
MseI TTAA 3 cut(s) 104, 356, 366
MslI CAYNNNNRTG 1 cut(s) 152
MspI CCGG 1 cut(s) 389
MvnI CGCG 1 cut(s) 406
NdeII GATC 2 cut(s) 299, 418
NlaIII CATG 1 cut(s) 262
NmuCI GTSAC 2 cut(s) 142, 154
NspI RCATGY 1 cut(s) 262
OliI CACNNNNGTG 1 cut(s) 152
PciI ACATGT 1 cut(s) 258
PcsI WCGNNNNNNNCGW 1 cut(s) 164
PfeI GAWTC 2 cut(s) 194, 383
PscI ACATGT 1 cut(s) 258
PsuI RGATCY 1 cut(s) 418
RseI CAYNNNNRTG 1 cut(s) 152
SaqAI TTAA 3 cut(s) 104, 356, 366
Sau3AI GATC 2 cut(s) 299, 418
SetI ASST 3 cut(s) 100, 271, 335
SfcI CTRYAG 1 cut(s) 223
SmiMI CAYNNNNRTG 1 cut(s) 152
SmlI CTYRAG 1 cut(s) 334
SmoI CTYRAG 1 cut(s) 334
Sse9I AATT 2 cut(s) 105, 377
SsiI CCGC 2 cut(s) 150, 438
TaaI ACNGT 1 cut(s) 413
TaqI TCGA 3 cut(s) 207, 302, 415
TasI AATT 2 cut(s) 105, 377
TfiI GAWTC 2 cut(s) 194, 383
Tru1I TTAA 3 cut(s) 104, 356, 366
Tru9I TTAA 3 cut(s) 104, 356, 366
TseFI GTSAC 2 cut(s) 142, 154
Tsp45I GTSAC 2 cut(s) 142, 154
TspGWI ACGGA 2 cut(s) 167, 176
XapI RAATTY 1 cut(s) 377
XceI RCATGY 1 cut(s) 262
XmiI GTMKAC 1 cut(s) 226
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.