MD16G1166000.v1.1

zinc-finger of the FCS-type, C2-C2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0015420
Physical Location & Seq
Forward (+)
13834269 .. 13835456
1188 bp
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UTR
Exon/CDS
Intron
MD16G1166000.v1.1.491

Sequence Viewer

Length: 462 bp
ATGGTGGGACTTAGCATAGTATTGGAAGAAGGTCAAAAGGGGAGTGGAGTTAGCAAAAAAATCCCTCAAGTAATTAACAAAGCCACCATGGTTGTCATCAACAAGCCTTTTTCCTCTTCATCTTCTTCTTCTTCTCTTTTGCCTTCTCCTTCAAGCCCTTCACAAATAACCCACAAAAGTTTTAACTTTTCTTCTCACTCCTCCTCACCCTCCTTTGGACAACCAAGTTTTCTCGACCAATGCTTTCTCTGCAAGCAGAAGCTCTTGCCTGGCAAGGACATCTACATGTACAAGGGGGACAGGGGATTTTGCAGCGTGGACTGCAGGTACAGGCAGATTTTCATGGATGAGGAAGAGATTGTTCGCAAGGAGAAGCAGAAGTACTGTTCACCATCTTCTTCTTCCGCTTCCTCTGATCAGCGCAAAGGGGCCAGAAACCGAGAGGGTGGATTTGCCTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-FLZ

Protein Analysis

154

Amino Acids

16.86

Weight (kDa)

9.36

Isoelectric Point (pI)

66.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-FLZ PF04570 70 - 118 4.1e-22 zinc-finger of the FCS-type, C2-C2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015420)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G49120
fragaria_vesca FvH4_4g18540
malus_domestica MD13G1166200.v1.1 MD16G1166000.v1.1
prunus_persica Prupe.1G132700_v2.0.a1
pyrus_communis pycom13g14200 pycom16g14040
rosa_chinensis RchiOBHm_Chr4g0423101
rosa_laevigata RLG00000007585
rosa_roxburghii Rroxscaffold_5G00365180
rosa_rugosa Rorug04G0183900
rosa_samantha Rh4AG243400 Rh4BG248100 Rh4CG258000 Rh4DG243300
rosa_wichuraiana Rw4G021000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 315
AciI CCGC 1 cut(s) 405
AfaI GTAC 3 cut(s) 290, 329, 383
AfiI CCNNNNNNNGG 1 cut(s) 215
AflIII ACRYGT 1 cut(s) 285
AgsI TTSAA 1 cut(s) 153
AjnI CCWGG 1 cut(s) 268
AluBI AGCT 1 cut(s) 262
AluI AGCT 1 cut(s) 262
AoxI GGCC 1 cut(s) 429
ApeKI GCWGC 1 cut(s) 312
AspLEI GCGC 1 cut(s) 423
AspS9I GGNCC 1 cut(s) 429
AsuHPI GGTGA 2 cut(s) 198, 381
BarI GAAGNNNNNNTAC 2 cut(s) 365, 397
BbvI GCAGC 1 cut(s) 324
BccI CCATC 1 cut(s) 400
BciT130I CCWGG 1 cut(s) 270
BclI TGATCA 1 cut(s) 415
BfmI CTRYAG 1 cut(s) 322
BfuAI ACCTGC 1 cut(s) 315
BisI GCNGC 1 cut(s) 313
BlsI GCNGC 1 cut(s) 314
BmcAI AGTACT 1 cut(s) 383
Bme1390I CCNGG 1 cut(s) 270
BmgT120I GGNCC 1 cut(s) 429
BmiI GGNNCC 1 cut(s) 430
BmrFI CCNGG 1 cut(s) 270
BpuEI CTTGAG 1 cut(s) 51
BsaJI CCNNGG 1 cut(s) 87
Bsc4I CCNNNNNNNGG 1 cut(s) 215
BseBI CCWGG 1 cut(s) 270
BseDI CCNNGG 1 cut(s) 87
BseGI GGATG 1 cut(s) 352
BseLI CCNNNNNNNGG 1 cut(s) 215
BseRI GAGGAG 2 cut(s) 190, 193
BseXI GCAGC 1 cut(s) 324
BshFI GGCC 1 cut(s) 431
BslFI GGGAC 2 cut(s) 21, 311
BslI CCNNNNNNNGG 1 cut(s) 215
BsmFI GGGAC 2 cut(s) 21, 311
BsnI GGCC 1 cut(s) 431
Bsp1407I TGTACA 1 cut(s) 288
Bsp143I GATC 1 cut(s) 415
Bsp19I CCATGG 1 cut(s) 87
BspACI CCGC 1 cut(s) 405
BspANI GGCC 1 cut(s) 431
BspLI GGNNCC 1 cut(s) 430
BspMAI CTGCAG 1 cut(s) 326
BspMI ACCTGC 1 cut(s) 315
BsrGI TGTACA 1 cut(s) 288
BssECI CCNNGG 1 cut(s) 87
BssMI GATC 1 cut(s) 415
BssT1I CCWWGG 1 cut(s) 87
Bst2UI CCWGG 1 cut(s) 270
Bst4CI ACNGT 1 cut(s) 386
Bst6I CTCTTC 2 cut(s) 121, 348
BstAUI TGTACA 1 cut(s) 288
BstC8I GCNNGC 1 cut(s) 254
BstDEI CTNAG 1 cut(s) 11
BstDSI CCRYGG 1 cut(s) 87
BstF5I GGATG 1 cut(s) 352
BstHHI GCGC 1 cut(s) 423
BstKTI GATC 1 cut(s) 418
BstMBI GATC 1 cut(s) 415
BstMWI GCNNNNNNNGC 2 cut(s) 249, 321
BstNI CCWGG 1 cut(s) 270
BstNSI RCATGY 1 cut(s) 289
BstSCI CCNGG 1 cut(s) 268
BstSFI CTRYAG 1 cut(s) 322
BstV1I GCAGC 1 cut(s) 324
BsuRI GGCC 1 cut(s) 431
BtgI CCRYGG 1 cut(s) 87
BtsCI GGATG 1 cut(s) 352
BveI ACCTGC 1 cut(s) 315
Cac8I GCNNGC 1 cut(s) 254
CfoI GCGC 1 cut(s) 423
Cfr13I GGNCC 1 cut(s) 429
Csp6I GTAC 3 cut(s) 289, 328, 382
CspCI CAANNNNNGTGG 2 cut(s) 73, 108
CviAII CATG 3 cut(s) 88, 286, 343
CviJI RGCY 5 cut(s) 83, 106, 156, 262, 431
CviKI_1 RGCY 5 cut(s) 83, 106, 156, 262, 431
CviQI GTAC 3 cut(s) 289, 328, 382
DdeI CTNAG 1 cut(s) 11
DpnI GATC 1 cut(s) 417
DpnII GATC 1 cut(s) 415
Eam1104I CTCTTC 2 cut(s) 121, 348
EarI CTCTTC 2 cut(s) 121, 348
Eco130I CCWWGG 1 cut(s) 87
EcoRII CCWGG 1 cut(s) 268
EcoT14I CCWWGG 1 cut(s) 87
ErhI CCWWGG 1 cut(s) 87
FaeI CATG 3 cut(s) 91, 289, 346
FaiI YATR 4 cut(s) 17, 89, 287, 344
FaqI GGGAC 2 cut(s) 21, 311
FatI CATG 3 cut(s) 87, 285, 342
FbaI TGATCA 1 cut(s) 415
Fnu4HI GCNGC 1 cut(s) 313
FokI GGATG 1 cut(s) 359
Fsp4HI GCNGC 1 cut(s) 313
GlaI GCGC 1 cut(s) 422
GluI GCNGC 1 cut(s) 313
HaeIII GGCC 1 cut(s) 431
HhaI GCGC 1 cut(s) 423
Hin1II CATG 3 cut(s) 91, 289, 346
Hin6I GCGC 1 cut(s) 421
HinP1I GCGC 1 cut(s) 421
HphI GGTGA 2 cut(s) 198, 381
Hpy166II GTNNAC 2 cut(s) 319, 389
Hpy188I TCNGA 1 cut(s) 415
Hpy188III TCNNGA 1 cut(s) 233
Hpy8I GTNNAC 2 cut(s) 319, 389
HpyAV CCTTC 4 cut(s) 23, 153, 159, 168
HpyCH4III ACNGT 1 cut(s) 386
HpyCH4V TGCA 3 cut(s) 252, 312, 324
HpyF10VI GCNNNNNNNGC 2 cut(s) 249, 321
HpyF3I CTNAG 1 cut(s) 11
Hsp92II CATG 3 cut(s) 91, 289, 346
HspAI GCGC 1 cut(s) 421
Ksp22I TGATCA 1 cut(s) 415
Kzo9I GATC 1 cut(s) 415
LpnPI CCDG 6 cut(s) 255, 282, 286, 310, 316, 445
Lsp1109I GCAGC 1 cut(s) 324
MalI GATC 1 cut(s) 417
MboI GATC 1 cut(s) 415
MluCI AATT 1 cut(s) 72
MnlI CCTC 8 cut(s) 75, 124, 211, 214, 220, 343, 421, 436
MseI TTAA 2 cut(s) 75, 183
MslI CAYNNNNRTG 1 cut(s) 284
MspR9I CCNGG 1 cut(s) 270
MvaI CCWGG 1 cut(s) 270
MwoI GCNNNNNNNGC 2 cut(s) 249, 321
NcoI CCATGG 1 cut(s) 87
NdeII GATC 1 cut(s) 415
NlaIII CATG 3 cut(s) 91, 289, 346
NlaIV GGNNCC 1 cut(s) 430
NspI RCATGY 1 cut(s) 289
PciI ACATGT 1 cut(s) 285
PkrI GCNGC 1 cut(s) 314
PscI ACATGT 1 cut(s) 285
Psp6I CCWGG 1 cut(s) 268
PspGI CCWGG 1 cut(s) 268
PspN4I GGNNCC 1 cut(s) 430
PspPI GGNCC 1 cut(s) 429
PstI CTGCAG 1 cut(s) 326
RsaI GTAC 3 cut(s) 290, 329, 383
RsaNI GTAC 3 cut(s) 289, 328, 382
RseI CAYNNNNRTG 1 cut(s) 284
SaqAI TTAA 2 cut(s) 75, 183
SatI GCNGC 1 cut(s) 313
Sau3AI GATC 1 cut(s) 415
Sau96I GGNCC 1 cut(s) 429
ScaI AGTACT 1 cut(s) 383
ScrFI CCNGG 1 cut(s) 270
SetI ASST 3 cut(s) 34, 264, 329
SfcI CTRYAG 1 cut(s) 322
SmiMI CAYNNNNRTG 1 cut(s) 284
SmlI CTYRAG 1 cut(s) 66
SmoI CTYRAG 1 cut(s) 66
Sse9I AATT 1 cut(s) 72
SsiI CCGC 1 cut(s) 405
StyD4I CCNGG 1 cut(s) 268
StyI CCWWGG 1 cut(s) 87
TaaI ACNGT 1 cut(s) 386
TaqI TCGA 1 cut(s) 234
TasI AATT 1 cut(s) 72
TatI WGTACW 2 cut(s) 288, 381
Tru1I TTAA 2 cut(s) 75, 183
Tru9I TTAA 2 cut(s) 75, 183
TseI GCWGC 1 cut(s) 312
TspDTI ATGAA 2 cut(s) 108, 331
XceI RCATGY 1 cut(s) 289
ZrmI AGTACT 1 cut(s) 383
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.