FvH4_4g18540

zinc-finger of the FCS-type, C2-C2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0015420
Physical Location & Seq
Reverse (-)
22373396 .. 22374577
1182 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g18540.t1

Sequence Viewer

Length: 441 bp
ATGGTGGGACTTAGTGTAGTATTGGAAGGTCAAAAGGGTAGTAGTGCTACTGCTACCGCTAGTGTTATTAACAAAGCCACTATGATGATCAACACGAACACCAAACCCTTCTCGCCCTCTGCTTTGCCATATTACCCCCGAGTTCACAACAACTATCCCTATTTGCCACCAAATCCCAATTTTCTTGACAAATGCTTTCTGTGCAAGCAGAAGCTCTTGCTTGGCAAAGACATCTACATGTACAAGGGAGATAGGGGTTTTTGCAGTGTGGAGTGCAGGTACAATCAGATTATGATGGACGAGGAGGAGATTGTTCGCAAGGAAATGAACTGCTCAATGGTTGCCATGAAACCCAATACAGCTTCTTCCTCTTCAAGCTCTTCAGCTTCTTCTTCTCGAGGCTCAAACCGAAACAAAGGGGCGGGTGGATTTGCCTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-FLZ

Protein Analysis

147

Amino Acids

16.02

Weight (kDa)

9.24

Isoelectric Point (pI)

42.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-FLZ PF04570 58 - 102 2.1e-22 zinc-finger of the FCS-type, C2-C2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015420)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G49120
fragaria_vesca FvH4_4g18540
malus_domestica MD13G1166200.v1.1 MD16G1166000.v1.1
prunus_persica Prupe.1G132700_v2.0.a1
pyrus_communis pycom13g14200 pycom16g14040
rosa_chinensis RchiOBHm_Chr4g0423101
rosa_laevigata RLG00000007585
rosa_roxburghii Rroxscaffold_5G00365180
rosa_rugosa Rorug04G0183900
rosa_samantha Rh4AG243400 Rh4BG248100 Rh4CG258000 Rh4DG243300
rosa_wichuraiana Rw4G021000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 267
AciI CCGC 2 cut(s) 57, 422
AcuI CTGAAG 1 cut(s) 366
AfaI GTAC 2 cut(s) 242, 281
AflIII ACRYGT 1 cut(s) 237
AgsI TTSAA 1 cut(s) 375
AluBI AGCT 4 cut(s) 214, 362, 378, 386
AluI AGCT 4 cut(s) 214, 362, 378, 386
Ama87I CYCGRG 2 cut(s) 138, 396
AvaI CYCGRG 2 cut(s) 138, 396
BccI CCATC 1 cut(s) 289
BclI TGATCA 1 cut(s) 87
BfaI CTAG 1 cut(s) 60
BfuAI ACCTGC 1 cut(s) 267
BmeT110I CYCGRG 2 cut(s) 138, 396
BsaXI ACNNNNNCTCC 2 cut(s) 263, 293
BseRI GAGGAG 2 cut(s) 317, 320
BsgI GTGCAG 1 cut(s) 295
BsiHKCI CYCGRG 2 cut(s) 138, 396
BslFI GGGAC 1 cut(s) 21
BsmFI GGGAC 1 cut(s) 21
BsoBI CYCGRG 2 cut(s) 138, 396
Bsp1407I TGTACA 1 cut(s) 240
Bsp143I GATC 1 cut(s) 87
BspACI CCGC 2 cut(s) 57, 422
BspMI ACCTGC 1 cut(s) 267
BspQI GCTCTTC 1 cut(s) 385
BsrGI TGTACA 1 cut(s) 240
BssMI GATC 1 cut(s) 87
Bst6I CTCTTC 2 cut(s) 376, 385
BstAUI TGTACA 1 cut(s) 240
BstC8I GCNNGC 1 cut(s) 206
BstDEI CTNAG 1 cut(s) 11
BstKTI GATC 1 cut(s) 90
BstMBI GATC 1 cut(s) 87
BstMWI GCNNNNNNNGC 1 cut(s) 201
BstNSI RCATGY 1 cut(s) 241
BtsI GCAGTG 1 cut(s) 271
BtsIMutI CAGTG 1 cut(s) 271
BveI ACCTGC 1 cut(s) 267
Cac8I GCNNGC 1 cut(s) 206
Csp6I GTAC 2 cut(s) 241, 280
CviAII CATG 2 cut(s) 238, 346
CviJI RGCY 6 cut(s) 77, 214, 362, 378, 386, 402
CviKI_1 RGCY 6 cut(s) 77, 214, 362, 378, 386, 402
CviQI GTAC 2 cut(s) 241, 280
DdeI CTNAG 1 cut(s) 11
DpnI GATC 1 cut(s) 89
DpnII GATC 1 cut(s) 87
Eam1104I CTCTTC 2 cut(s) 376, 385
EarI CTCTTC 2 cut(s) 376, 385
Eco57I CTGAAG 1 cut(s) 366
Eco88I CYCGRG 2 cut(s) 138, 396
FaeI CATG 2 cut(s) 241, 349
FaiI YATR 5 cut(s) 83, 130, 239, 293, 347
FaqI GGGAC 1 cut(s) 21
FatI CATG 2 cut(s) 237, 345
FauI CCCGC 1 cut(s) 415
FbaI TGATCA 1 cut(s) 87
FspBI CTAG 1 cut(s) 60
Hin1II CATG 2 cut(s) 241, 349
Hpy166II GTNNAC 1 cut(s) 145
Hpy188I TCNGA 1 cut(s) 288
Hpy188III TCNNGA 2 cut(s) 185, 396
Hpy8I GTNNAC 1 cut(s) 145
HpyAV CCTTC 2 cut(s) 20, 118
HpyCH4V TGCA 3 cut(s) 204, 264, 276
HpyF10VI GCNNNNNNNGC 1 cut(s) 201
HpyF3I CTNAG 1 cut(s) 11
Hsp92II CATG 2 cut(s) 241, 349
Ksp22I TGATCA 1 cut(s) 87
Kzo9I GATC 1 cut(s) 87
LguI GCTCTTC 1 cut(s) 385
LpnPI CCDG 1 cut(s) 262
MaeI CTAG 1 cut(s) 60
MalI GATC 1 cut(s) 89
MboI GATC 1 cut(s) 87
MboII GAAGA 5 cut(s) 357, 363, 372, 381, 384
MluCI AATT 1 cut(s) 178
MnlI CCTC 5 cut(s) 127, 295, 298, 379, 392
MseI TTAA 1 cut(s) 69
MslI CAYNNNNRTG 2 cut(s) 83, 236
MwoI GCNNNNNNNGC 1 cut(s) 201
NdeII GATC 1 cut(s) 87
NlaIII CATG 2 cut(s) 241, 349
NspI RCATGY 1 cut(s) 241
PaeR7I CTCGAG 1 cut(s) 396
PciI ACATGT 1 cut(s) 237
PciSI GCTCTTC 1 cut(s) 385
PscI ACATGT 1 cut(s) 237
RsaI GTAC 2 cut(s) 242, 281
RsaNI GTAC 2 cut(s) 241, 280
RseI CAYNNNNRTG 2 cut(s) 83, 236
SapI GCTCTTC 1 cut(s) 385
SaqAI TTAA 1 cut(s) 69
Sau3AI GATC 1 cut(s) 87
SetI ASST 6 cut(s) 31, 216, 281, 364, 380, 388
Sfr274I CTCGAG 1 cut(s) 396
SlaI CTCGAG 1 cut(s) 396
SmiMI CAYNNNNRTG 2 cut(s) 83, 236
SmlI CTYRAG 1 cut(s) 396
SmoI CTYRAG 1 cut(s) 396
Sse9I AATT 1 cut(s) 178
SsiI CCGC 2 cut(s) 57, 422
SspMI CTAG 1 cut(s) 60
TaqI TCGA 1 cut(s) 397
TasI AATT 1 cut(s) 178
TatI WGTACW 1 cut(s) 240
Tru1I TTAA 1 cut(s) 69
Tru9I TTAA 1 cut(s) 69
TscAI CASTG 1 cut(s) 271
TspDTI ATGAA 2 cut(s) 341, 362
TspRI CASTG 1 cut(s) 271
XceI RCATGY 1 cut(s) 241
XhoI CTCGAG 1 cut(s) 396
XspI CTAG 1 cut(s) 60
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.