MD13G1166200.v1.1

zinc-finger of the FCS-type, C2-C2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0015420
Physical Location & Seq
Forward (+)
13313619 .. 13314778
1160 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1166200.v1.1.491

Sequence Viewer

Length: 453 bp
ATGGTGGGACTTAGCATAGTATTGGAAGGAGGTCAAAAGGGGAGTGGAGTTAGCAAAAATGTCCCACAAGTAATTAACAAAGCCACCATGATTGTCATCAAAAAGCCTTCTTCTTCTTCTTCTTTTTTGCCTTCTCCTTCAAGCCCTTCACAAATAACCCACACAAGTTTTCATTTTTCTTCTCACTCCTCAGTCTCACCCTCCTTCTTTGGGCAACCAACTTTTCTTGACCAATGCTTTCTCTGCAAGCAGAAACTCTTGCCTGGCAAGGACATCTACATGTACAAGGGGGACAGGGGATTTTGCAGCGTGGACTGCAGGTACAGGCAGATTTTCATGGACGAGGAAGAGATTGTTCGCAAAGAGAAGCAGAAGTACTGTTCTTCTTCTCCTTCAGCTTCCTCTGATCAGCGCAAAGGGACCAGAAACCGAGCGGGTGGAATTGCCTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-FLZ

Protein Analysis

151

Amino Acids

16.52

Weight (kDa)

9.49

Isoelectric Point (pI)

56.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-FLZ PF04570 71 - 116 7.3e-22 zinc-finger of the FCS-type, C2-C2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015420)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G49120
fragaria_vesca FvH4_4g18540
malus_domestica MD13G1166200.v1.1 MD16G1166000.v1.1
prunus_persica Prupe.1G132700_v2.0.a1
pyrus_communis pycom13g14200 pycom16g14040
rosa_chinensis RchiOBHm_Chr4g0423101
rosa_laevigata RLG00000007585
rosa_roxburghii Rroxscaffold_5G00365180
rosa_rugosa Rorug04G0183900
rosa_samantha Rh4AG243400 Rh4BG248100 Rh4CG258000 Rh4DG243300
rosa_wichuraiana Rw4G021000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 309
AccBSI CCGCTC 1 cut(s) 434
AciI CCGC 1 cut(s) 434
AcuI CTGAAG 1 cut(s) 378
AfaI GTAC 3 cut(s) 284, 323, 377
AfiI CCNNNNNNNGG 1 cut(s) 210
AflIII ACRYGT 1 cut(s) 279
AgsI TTSAA 1 cut(s) 141
AjnI CCWGG 1 cut(s) 262
AluBI AGCT 1 cut(s) 398
AluI AGCT 1 cut(s) 398
Alw26I GTCTC 1 cut(s) 199
ApeKI GCWGC 1 cut(s) 306
AspLEI GCGC 1 cut(s) 414
AspS9I GGNCC 1 cut(s) 420
AsuHPI GGTGA 1 cut(s) 189
AvaII GGWCC 1 cut(s) 420
BarI GAAGNNNNNNTAC 2 cut(s) 359, 391
BbvI GCAGC 1 cut(s) 318
BciT130I CCWGG 1 cut(s) 264
BclI TGATCA 1 cut(s) 406
BcoDI GTCTC 1 cut(s) 199
BfmI CTRYAG 1 cut(s) 316
BfuAI ACCTGC 1 cut(s) 309
BisI GCNGC 1 cut(s) 307
BlsI GCNGC 1 cut(s) 308
BmcAI AGTACT 1 cut(s) 377
Bme1390I CCNGG 1 cut(s) 264
Bme18I GGWCC 1 cut(s) 420
BmgT120I GGNCC 1 cut(s) 420
BmiI GGNNCC 1 cut(s) 421
BmrFI CCNGG 1 cut(s) 264
BsaBI GATNNNNATC 1 cut(s) 95
Bsc4I CCNNNNNNNGG 1 cut(s) 210
Bse8I GATNNNNATC 1 cut(s) 95
BseBI CCWGG 1 cut(s) 264
BseJI GATNNNNATC 1 cut(s) 95
BseLI CCNNNNNNNGG 1 cut(s) 210
BseMII CTCAG 1 cut(s) 204
BseRI GAGGAG 1 cut(s) 178
BseXI GCAGC 1 cut(s) 318
BslFI GGGAC 4 cut(s) 21, 47, 305, 433
BslI CCNNNNNNNGG 1 cut(s) 210
BsmAI GTCTC 1 cut(s) 199
BsmFI GGGAC 4 cut(s) 21, 47, 305, 433
Bsp1407I TGTACA 1 cut(s) 282
Bsp143I GATC 1 cut(s) 406
BspACI CCGC 1 cut(s) 434
BspCNI CTCAG 1 cut(s) 203
BspLI GGNNCC 1 cut(s) 421
BspMAI CTGCAG 1 cut(s) 320
BspMI ACCTGC 1 cut(s) 309
BsrBI CCGCTC 1 cut(s) 434
BsrGI TGTACA 1 cut(s) 282
BssMI GATC 1 cut(s) 406
Bst2UI CCWGG 1 cut(s) 264
Bst4CI ACNGT 1 cut(s) 380
Bst6I CTCTTC 1 cut(s) 342
BstAUI TGTACA 1 cut(s) 282
BstC8I GCNNGC 1 cut(s) 248
BstDEI CTNAG 2 cut(s) 11, 190
BstHHI GCGC 1 cut(s) 414
BstKTI GATC 1 cut(s) 409
BstMAI GTCTC 1 cut(s) 199
BstMBI GATC 1 cut(s) 406
BstMWI GCNNNNNNNGC 2 cut(s) 243, 315
BstNI CCWGG 1 cut(s) 264
BstNSI RCATGY 1 cut(s) 283
BstSCI CCNGG 1 cut(s) 262
BstSFI CTRYAG 1 cut(s) 316
BstV1I GCAGC 1 cut(s) 318
BveI ACCTGC 1 cut(s) 309
Cac8I GCNNGC 1 cut(s) 248
CfoI GCGC 1 cut(s) 414
Cfr13I GGNCC 1 cut(s) 420
Csp6I GTAC 3 cut(s) 283, 322, 376
CspCI CAANNNNNGTGG 2 cut(s) 73, 108
CviAII CATG 3 cut(s) 88, 280, 337
CviJI RGCY 4 cut(s) 83, 106, 144, 398
CviKI_1 RGCY 4 cut(s) 83, 106, 144, 398
CviQI GTAC 3 cut(s) 283, 322, 376
DdeI CTNAG 2 cut(s) 11, 190
DpnI GATC 1 cut(s) 408
DpnII GATC 1 cut(s) 406
Eam1104I CTCTTC 1 cut(s) 342
EarI CTCTTC 1 cut(s) 342
Eco47I GGWCC 1 cut(s) 420
Eco57I CTGAAG 1 cut(s) 378
EcoRII CCWGG 1 cut(s) 262
FaeI CATG 3 cut(s) 91, 283, 340
FaiI YATR 4 cut(s) 17, 89, 281, 338
FaqI GGGAC 4 cut(s) 21, 47, 305, 433
FatI CATG 3 cut(s) 87, 279, 336
FauI CCCGC 1 cut(s) 427
FbaI TGATCA 1 cut(s) 406
Fnu4HI GCNGC 1 cut(s) 307
Fsp4HI GCNGC 1 cut(s) 307
GlaI GCGC 1 cut(s) 413
GluI GCNGC 1 cut(s) 307
HhaI GCGC 1 cut(s) 414
Hin1II CATG 3 cut(s) 91, 283, 340
Hin6I GCGC 1 cut(s) 412
HinP1I GCGC 1 cut(s) 412
HphI GGTGA 1 cut(s) 189
Hpy166II GTNNAC 1 cut(s) 313
Hpy188I TCNGA 1 cut(s) 406
Hpy188III TCNNGA 1 cut(s) 227
Hpy8I GTNNAC 1 cut(s) 313
HpyAV CCTTC 7 cut(s) 20, 117, 141, 147, 156, 214, 402
HpyCH4III ACNGT 1 cut(s) 380
HpyCH4V TGCA 3 cut(s) 246, 306, 318
HpyF10VI GCNNNNNNNGC 2 cut(s) 243, 315
HpyF3I CTNAG 2 cut(s) 11, 190
Hsp92II CATG 3 cut(s) 91, 283, 340
HspAI GCGC 1 cut(s) 412
Ksp22I TGATCA 1 cut(s) 406
Kzo9I GATC 1 cut(s) 406
LpnPI CCDG 6 cut(s) 249, 276, 280, 304, 310, 436
Lsp1109I GCAGC 1 cut(s) 318
MalI GATC 1 cut(s) 408
MbiI CCGCTC 1 cut(s) 434
MboI GATC 1 cut(s) 406
MboII GAAGA 8 cut(s) 102, 105, 108, 111, 171, 359, 375, 378
MluCI AATT 2 cut(s) 72, 441
MnlI CCTC 5 cut(s) 23, 199, 211, 337, 412
MseI TTAA 1 cut(s) 75
MslI CAYNNNNRTG 1 cut(s) 278
MspR9I CCNGG 1 cut(s) 264
MvaI CCWGG 1 cut(s) 264
MwoI GCNNNNNNNGC 2 cut(s) 243, 315
NdeII GATC 1 cut(s) 406
NlaIII CATG 3 cut(s) 91, 283, 340
NlaIV GGNNCC 1 cut(s) 421
NspI RCATGY 1 cut(s) 283
PciI ACATGT 1 cut(s) 279
PkrI GCNGC 1 cut(s) 308
PscI ACATGT 1 cut(s) 279
Psp6I CCWGG 1 cut(s) 262
PspGI CCWGG 1 cut(s) 262
PspN4I GGNNCC 1 cut(s) 421
PspPI GGNCC 1 cut(s) 420
PstI CTGCAG 1 cut(s) 320
RsaI GTAC 3 cut(s) 284, 323, 377
RsaNI GTAC 3 cut(s) 283, 322, 376
RseI CAYNNNNRTG 1 cut(s) 278
SaqAI TTAA 1 cut(s) 75
SatI GCNGC 1 cut(s) 307
Sau3AI GATC 1 cut(s) 406
Sau96I GGNCC 1 cut(s) 420
ScaI AGTACT 1 cut(s) 377
ScrFI CCNGG 1 cut(s) 264
SetI ASST 3 cut(s) 34, 323, 400
SfcI CTRYAG 1 cut(s) 316
SinI GGWCC 1 cut(s) 420
SmiMI CAYNNNNRTG 1 cut(s) 278
Sse9I AATT 2 cut(s) 72, 441
SsiI CCGC 1 cut(s) 434
StyD4I CCNGG 1 cut(s) 262
TaaI ACNGT 1 cut(s) 380
TasI AATT 2 cut(s) 72, 441
TatI WGTACW 2 cut(s) 282, 375
Tru1I TTAA 1 cut(s) 75
Tru9I TTAA 1 cut(s) 75
TseI GCWGC 1 cut(s) 306
TspDTI ATGAA 2 cut(s) 161, 325
VpaK11BI GGWCC 1 cut(s) 420
XceI RCATGY 1 cut(s) 283
ZrmI AGTACT 1 cut(s) 377
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.