Rh4BG248100

zinc-finger of the FCS-type, C2-C2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0015420
Physical Location & Seq
Reverse (-)
41578262 .. 41579783
1522 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG248100.1

Sequence Viewer

Length: 474 bp
ATGGTGGGACTTAGTGTATTATTGGAAAGTCAAAATGGTAGTAGTACTACTGCTACTACTGCTGTTGGTGGTGATGGCAAGAAAATCCCGCAAGTTATTAACAAGGCCACTATGGTGATCAATACCAACACCAAACCCTTCTCTCCCTCTGCTCTGCCTTATTACCCCCAAAATTTTAACCACTCTCCCTATTTGCCACCCAATCCCAATTTCCTTGAAAAATGCTTTCTGTGCAAGCAGAAACTCTTGCTTGGCAAAGACATCTACATGTACAAGGGAGATAGGGGCTTTTGCAGCGTGGAGTGCAGGTACAATCAGATTTTGATGGATGAGGAGGAGATTGTTCGCAATGAAATGCACTGCTCAATGGTGGCCATGAAACCCAATTCAGCTTCTTCTTCTTCAGCTTCTTCTTCCAGAGGCTCAAACCGAAACAAAGGGAGCAGAAACAGAGCTGGTGGATTTGCCTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-FLZ

Protein Analysis

157

Amino Acids

17.23

Weight (kDa)

9.26

Isoelectric Point (pI)

49.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-FLZ PF04570 67 - 112 4.1e-22 zinc-finger of the FCS-type, C2-C2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015420)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G49120
fragaria_vesca FvH4_4g18540
malus_domestica MD13G1166200.v1.1 MD16G1166000.v1.1
prunus_persica Prupe.1G132700_v2.0.a1
pyrus_communis pycom13g14200 pycom16g14040
rosa_chinensis RchiOBHm_Chr4g0423101
rosa_laevigata RLG00000007585
rosa_roxburghii Rroxscaffold_5G00365180
rosa_rugosa Rorug04G0183900
rosa_samantha Rh4AG243400 Rh4BG248100 Rh4CG258000 Rh4DG243300
rosa_wichuraiana Rw4G021000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 297
AciI CCGC 1 cut(s) 89
AcoI YGGCCR 1 cut(s) 372
AcsI RAATTY 1 cut(s) 172
AcuI CTGAAG 1 cut(s) 387
AfaI GTAC 3 cut(s) 46, 272, 311
AflIII ACRYGT 1 cut(s) 267
AgsI TTSAA 1 cut(s) 218
AjuI GAANNNNNNNTTGG 2 cut(s) 194, 226
AleI CACNNNNGTG 1 cut(s) 113
AluBI AGCT 3 cut(s) 392, 407, 455
AluI AGCT 3 cut(s) 392, 407, 455
AoxI GGCC 2 cut(s) 105, 372
ApeKI GCWGC 1 cut(s) 294
ApoI RAATTY 1 cut(s) 172
AsuHPI GGTGA 2 cut(s) 83, 127
BalI TGGCCA 1 cut(s) 374
BbvI GCAGC 1 cut(s) 306
BccI CCATC 2 cut(s) 68, 319
BclI TGATCA 1 cut(s) 117
BfuAI ACCTGC 1 cut(s) 297
BisI GCNGC 1 cut(s) 295
BlsI GCNGC 1 cut(s) 296
BmcAI AGTACT 1 cut(s) 46
BsaXI ACNNNNNCTCC 2 cut(s) 293, 323
Bse3DI GCAATG 1 cut(s) 355
BseGI GGATG 1 cut(s) 334
BseMI GCAATG 1 cut(s) 355
BseRI GAGGAG 2 cut(s) 347, 350
BseXI GCAGC 1 cut(s) 306
BsgI GTGCAG 1 cut(s) 325
BshFI GGCC 2 cut(s) 107, 374
BslFI GGGAC 1 cut(s) 21
BsmFI GGGAC 1 cut(s) 21
BsnI GGCC 2 cut(s) 107, 374
Bsp1407I TGTACA 1 cut(s) 270
Bsp143I GATC 1 cut(s) 117
BspACI CCGC 1 cut(s) 89
BspANI GGCC 2 cut(s) 107, 374
BspMI ACCTGC 1 cut(s) 297
BsrDI GCAATG 1 cut(s) 355
BsrGI TGTACA 1 cut(s) 270
BssMI GATC 1 cut(s) 117
BstAUI TGTACA 1 cut(s) 270
BstC8I GCNNGC 1 cut(s) 236
BstDEI CTNAG 1 cut(s) 11
BstF5I GGATG 1 cut(s) 334
BstKTI GATC 1 cut(s) 120
BstMBI GATC 1 cut(s) 117
BstMWI GCNNNNNNNGC 4 cut(s) 59, 231, 294, 303
BstNSI RCATGY 1 cut(s) 271
BstV1I GCAGC 1 cut(s) 306
BsuRI GGCC 2 cut(s) 107, 374
BtsCI GGATG 1 cut(s) 334
BtsI GCAGTG 1 cut(s) 358
BtsIMutI CAGTG 1 cut(s) 358
BveI ACCTGC 1 cut(s) 297
Cac8I GCNNGC 1 cut(s) 236
Csp6I GTAC 3 cut(s) 45, 271, 310
CviAII CATG 2 cut(s) 268, 376
CviJI RGCY 7 cut(s) 107, 288, 374, 392, 407, 423, 455
CviKI_1 RGCY 7 cut(s) 107, 288, 374, 392, 407, 423, 455
CviQI GTAC 3 cut(s) 45, 271, 310
DdeI CTNAG 1 cut(s) 11
DpnI GATC 1 cut(s) 119
DpnII GATC 1 cut(s) 117
EaeI YGGCCR 1 cut(s) 372
Eco57I CTGAAG 1 cut(s) 387
FaeI CATG 2 cut(s) 271, 379
FaiI YATR 3 cut(s) 113, 269, 377
FaqI GGGAC 1 cut(s) 21
FatI CATG 2 cut(s) 267, 375
FauI CCCGC 1 cut(s) 96
FbaI TGATCA 1 cut(s) 117
Fnu4HI GCNGC 1 cut(s) 295
FokI GGATG 1 cut(s) 341
Fsp4HI GCNGC 1 cut(s) 295
GluI GCNGC 1 cut(s) 295
HaeIII GGCC 2 cut(s) 107, 374
Hin1II CATG 2 cut(s) 271, 379
HphI GGTGA 2 cut(s) 83, 127
Hpy188I TCNGA 1 cut(s) 318
Hpy188III TCNNGA 1 cut(s) 417
HpyAV CCTTC 1 cut(s) 148
HpyCH4V TGCA 4 cut(s) 234, 294, 306, 358
HpyF10VI GCNNNNNNNGC 4 cut(s) 59, 231, 294, 303
HpyF3I CTNAG 1 cut(s) 11
Hsp92II CATG 2 cut(s) 271, 379
Ksp22I TGATCA 1 cut(s) 117
Kzo9I GATC 1 cut(s) 117
LmnI GCTCC 1 cut(s) 441
LpnPI CCDG 3 cut(s) 292, 430, 441
Lsp1109I GCAGC 1 cut(s) 306
MalI GATC 1 cut(s) 119
MboI GATC 1 cut(s) 117
MboII GAAGA 5 cut(s) 387, 390, 393, 402, 405
MlsI TGGCCA 1 cut(s) 374
MluCI AATT 3 cut(s) 172, 208, 385
MluNI TGGCCA 1 cut(s) 374
MnlI CCTC 4 cut(s) 157, 325, 328, 413
Mox20I TGGCCA 1 cut(s) 374
MscI TGGCCA 1 cut(s) 374
MseI TTAA 2 cut(s) 99, 177
MslI CAYNNNNRTG 2 cut(s) 113, 266
Msp20I TGGCCA 1 cut(s) 374
MwoI GCNNNNNNNGC 4 cut(s) 59, 231, 294, 303
NdeII GATC 1 cut(s) 117
NlaIII CATG 2 cut(s) 271, 379
NspI RCATGY 1 cut(s) 271
OliI CACNNNNGTG 1 cut(s) 113
PciI ACATGT 1 cut(s) 267
PkrI GCNGC 1 cut(s) 296
PscI ACATGT 1 cut(s) 267
RsaI GTAC 3 cut(s) 46, 272, 311
RsaNI GTAC 3 cut(s) 45, 271, 310
RseI CAYNNNNRTG 2 cut(s) 113, 266
SaqAI TTAA 2 cut(s) 99, 177
SatI GCNGC 1 cut(s) 295
Sau3AI GATC 1 cut(s) 117
ScaI AGTACT 1 cut(s) 46
SetI ASST 4 cut(s) 311, 394, 409, 457
SmiMI CAYNNNNRTG 2 cut(s) 113, 266
Sse9I AATT 3 cut(s) 172, 208, 385
SsiI CCGC 1 cut(s) 89
TasI AATT 3 cut(s) 172, 208, 385
TatI WGTACW 2 cut(s) 44, 270
Tru1I TTAA 2 cut(s) 99, 177
Tru9I TTAA 2 cut(s) 99, 177
TscAI CASTG 1 cut(s) 365
TseI GCWGC 1 cut(s) 294
TspDTI ATGAA 2 cut(s) 366, 392
TspRI CASTG 1 cut(s) 365
XapI RAATTY 1 cut(s) 172
XceI RCATGY 1 cut(s) 271
ZrmI AGTACT 1 cut(s) 46
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.