Rh4CG258000

zinc-finger of the FCS-type, C2-C2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0015420
Physical Location & Seq
Reverse (-)
51102698 .. 51103373
676 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG258000.1

Sequence Viewer

Length: 465 bp
ATGGTGGGACTTAGTGTATTATTGGAAAGTCAAAATGGTAGTAGTACTACTGCTGTTGGTGGTGATGGCAAGAAAATCCCGCAAGTTATTAACAAGGCCACTATGGTGATCAATACCAACACCAAACCCTTCTCTCCCTCTGCTCTGCCTTATTACCCCCAAAATTTTAACCACTCTCCCTATTTGCCACCCAATCCCAATTTCCTTGAAAAATGCTTTCTGTGCAAGCAGAAACTCTTGCTTGGCAAAGACATCTACATGTACAAGGGAGATAGGGGCTTTTGCAGCGTGGAGTGCAGGTACAATCAGATTTTGATGGATGAGGAGGAGATTGTTCGCAATGAAATGCACTGCTCAATGGTGGCCATGAAACCCGATTCAGCTTCTTCTTCTTCAGCTTCTTCTTCCAGAGGCTCAAACCGAAACAAAGGGAGCAGAAACAGAGCGGGTGGATTTGCCTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-FLZ

Protein Analysis

154

Amino Acids

16.96

Weight (kDa)

9.13

Isoelectric Point (pI)

51.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-FLZ PF04570 64 - 109 3.9e-22 zinc-finger of the FCS-type, C2-C2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015420)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G49120
fragaria_vesca FvH4_4g18540
malus_domestica MD13G1166200.v1.1 MD16G1166000.v1.1
prunus_persica Prupe.1G132700_v2.0.a1
pyrus_communis pycom13g14200 pycom16g14040
rosa_chinensis RchiOBHm_Chr4g0423101
rosa_laevigata RLG00000007585
rosa_roxburghii Rroxscaffold_5G00365180
rosa_rugosa Rorug04G0183900
rosa_samantha Rh4AG243400 Rh4BG248100 Rh4CG258000 Rh4DG243300
rosa_wichuraiana Rw4G021000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 288
AccBSI CCGCTC 1 cut(s) 446
AciI CCGC 2 cut(s) 80, 446
AcoI YGGCCR 1 cut(s) 363
AcsI RAATTY 1 cut(s) 163
AcuI CTGAAG 1 cut(s) 378
AfaI GTAC 3 cut(s) 46, 263, 302
AflIII ACRYGT 1 cut(s) 258
AgsI TTSAA 1 cut(s) 209
AjuI GAANNNNNNNTTGG 2 cut(s) 185, 217
AleI CACNNNNGTG 1 cut(s) 104
AluBI AGCT 2 cut(s) 383, 398
AluI AGCT 2 cut(s) 383, 398
AoxI GGCC 2 cut(s) 96, 363
ApeKI GCWGC 1 cut(s) 285
ApoI RAATTY 1 cut(s) 163
AsuHPI GGTGA 2 cut(s) 74, 118
BalI TGGCCA 1 cut(s) 365
BbvI GCAGC 1 cut(s) 297
BccI CCATC 2 cut(s) 59, 310
BclI TGATCA 1 cut(s) 108
BfuAI ACCTGC 1 cut(s) 288
BisI GCNGC 1 cut(s) 286
BlsI GCNGC 1 cut(s) 287
BmcAI AGTACT 1 cut(s) 46
BsaXI ACNNNNNCTCC 2 cut(s) 284, 314
Bse3DI GCAATG 1 cut(s) 346
BseGI GGATG 1 cut(s) 325
BseMI GCAATG 1 cut(s) 346
BseRI GAGGAG 2 cut(s) 338, 341
BseXI GCAGC 1 cut(s) 297
BsgI GTGCAG 1 cut(s) 316
BshFI GGCC 2 cut(s) 98, 365
BslFI GGGAC 1 cut(s) 21
BsmFI GGGAC 1 cut(s) 21
BsnI GGCC 2 cut(s) 98, 365
Bsp1407I TGTACA 1 cut(s) 261
Bsp143I GATC 1 cut(s) 108
BspACI CCGC 2 cut(s) 80, 446
BspANI GGCC 2 cut(s) 98, 365
BspMI ACCTGC 1 cut(s) 288
BsrBI CCGCTC 1 cut(s) 446
BsrDI GCAATG 1 cut(s) 346
BsrGI TGTACA 1 cut(s) 261
BssMI GATC 1 cut(s) 108
BstAUI TGTACA 1 cut(s) 261
BstC8I GCNNGC 1 cut(s) 227
BstDEI CTNAG 1 cut(s) 11
BstF5I GGATG 1 cut(s) 325
BstKTI GATC 1 cut(s) 111
BstMBI GATC 1 cut(s) 108
BstMWI GCNNNNNNNGC 3 cut(s) 222, 285, 294
BstNSI RCATGY 1 cut(s) 262
BstV1I GCAGC 1 cut(s) 297
BsuRI GGCC 2 cut(s) 98, 365
BtsCI GGATG 1 cut(s) 325
BtsI GCAGTG 1 cut(s) 349
BtsIMutI CAGTG 1 cut(s) 349
BveI ACCTGC 1 cut(s) 288
Cac8I GCNNGC 1 cut(s) 227
Csp6I GTAC 3 cut(s) 45, 262, 301
CviAII CATG 2 cut(s) 259, 367
CviJI RGCY 6 cut(s) 98, 279, 365, 383, 398, 414
CviKI_1 RGCY 6 cut(s) 98, 279, 365, 383, 398, 414
CviQI GTAC 3 cut(s) 45, 262, 301
DdeI CTNAG 1 cut(s) 11
DpnI GATC 1 cut(s) 110
DpnII GATC 1 cut(s) 108
EaeI YGGCCR 1 cut(s) 363
Eco57I CTGAAG 1 cut(s) 378
FaeI CATG 2 cut(s) 262, 370
FaiI YATR 3 cut(s) 104, 260, 368
FaqI GGGAC 1 cut(s) 21
FatI CATG 2 cut(s) 258, 366
FauI CCCGC 2 cut(s) 87, 439
FbaI TGATCA 1 cut(s) 108
Fnu4HI GCNGC 1 cut(s) 286
FokI GGATG 1 cut(s) 332
Fsp4HI GCNGC 1 cut(s) 286
GluI GCNGC 1 cut(s) 286
HaeIII GGCC 2 cut(s) 98, 365
Hin1II CATG 2 cut(s) 262, 370
HinfI GANTC 1 cut(s) 377
HphI GGTGA 2 cut(s) 74, 118
Hpy188I TCNGA 1 cut(s) 309
Hpy188III TCNNGA 1 cut(s) 408
HpyAV CCTTC 1 cut(s) 139
HpyCH4V TGCA 4 cut(s) 225, 285, 297, 349
HpyF10VI GCNNNNNNNGC 3 cut(s) 222, 285, 294
HpyF3I CTNAG 1 cut(s) 11
Hsp92II CATG 2 cut(s) 262, 370
Ksp22I TGATCA 1 cut(s) 108
Kzo9I GATC 1 cut(s) 108
LmnI GCTCC 1 cut(s) 432
LpnPI CCDG 2 cut(s) 283, 421
Lsp1109I GCAGC 1 cut(s) 297
MalI GATC 1 cut(s) 110
MbiI CCGCTC 1 cut(s) 446
MboI GATC 1 cut(s) 108
MboII GAAGA 5 cut(s) 378, 381, 384, 393, 396
MlsI TGGCCA 1 cut(s) 365
MluCI AATT 2 cut(s) 163, 199
MluNI TGGCCA 1 cut(s) 365
MnlI CCTC 4 cut(s) 148, 316, 319, 404
Mox20I TGGCCA 1 cut(s) 365
MscI TGGCCA 1 cut(s) 365
MseI TTAA 2 cut(s) 90, 168
MslI CAYNNNNRTG 2 cut(s) 104, 257
Msp20I TGGCCA 1 cut(s) 365
MwoI GCNNNNNNNGC 3 cut(s) 222, 285, 294
NdeII GATC 1 cut(s) 108
NlaIII CATG 2 cut(s) 262, 370
NspI RCATGY 1 cut(s) 262
OliI CACNNNNGTG 1 cut(s) 104
PciI ACATGT 1 cut(s) 258
PfeI GAWTC 1 cut(s) 377
PkrI GCNGC 1 cut(s) 287
PscI ACATGT 1 cut(s) 258
RsaI GTAC 3 cut(s) 46, 263, 302
RsaNI GTAC 3 cut(s) 45, 262, 301
RseI CAYNNNNRTG 2 cut(s) 104, 257
SaqAI TTAA 2 cut(s) 90, 168
SatI GCNGC 1 cut(s) 286
Sau3AI GATC 1 cut(s) 108
ScaI AGTACT 1 cut(s) 46
SetI ASST 3 cut(s) 302, 385, 400
SmiMI CAYNNNNRTG 2 cut(s) 104, 257
Sse9I AATT 2 cut(s) 163, 199
SsiI CCGC 2 cut(s) 80, 446
TasI AATT 2 cut(s) 163, 199
TatI WGTACW 2 cut(s) 44, 261
TfiI GAWTC 1 cut(s) 377
Tru1I TTAA 2 cut(s) 90, 168
Tru9I TTAA 2 cut(s) 90, 168
TscAI CASTG 1 cut(s) 356
TseI GCWGC 1 cut(s) 285
TspDTI ATGAA 2 cut(s) 357, 383
TspRI CASTG 1 cut(s) 356
XapI RAATTY 1 cut(s) 163
XceI RCATGY 1 cut(s) 262
ZrmI AGTACT 1 cut(s) 46
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.