Rh4DG243300

zinc-finger of the FCS-type, C2-C2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0015420
Physical Location & Seq
Reverse (-)
45417783 .. 45419309
1527 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG243300.1

Sequence Viewer

Length: 477 bp
ATGGTGGGACTTAGTGTATTATTGGAAAGTCAAAATGGTAGTAGTACTACTGCTACTACTGCTGTTGGTGGTGATGGCAAGAAAATCCCGCAAGTTATTAACAAGGCCGCTATGGTGATCAATACCAACACCAAACCCTTCTCTCCCTCTGCTCTGCCTTATTACCCCCAAAATTTTAACCACTCTCCCTATTTGCCACCCAATCCCAATTTCCTTGAAAAATGCTTTCTGTGCCAGCAGAAACTCTTGCTTGGCAAAGACATCTACATGTACAAGGGAGATAGGGGCTTTTGCAGCGTGGAGTGCAGGTACAATCAGATTTTGATGGATGAGGAGGAGATTGTTCGCAATGAAATGCACTGCTCAATGGTGGCCATGAAACCCAATTCAGCTTCTTCTTCTTCTTCAGCTTCTTCTTCCAGAGGCTCAAACCGAAACAAAGGGAGCAGAAACAGAGCGGGTGGATTTGCCTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-FLZ

Protein Analysis

158

Amino Acids

17.29

Weight (kDa)

9.15

Isoelectric Point (pI)

49.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-FLZ PF04570 67 - 112 9.7e-22 zinc-finger of the FCS-type, C2-C2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015420)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G49120
fragaria_vesca FvH4_4g18540
malus_domestica MD13G1166200.v1.1 MD16G1166000.v1.1
prunus_persica Prupe.1G132700_v2.0.a1
pyrus_communis pycom13g14200 pycom16g14040
rosa_chinensis RchiOBHm_Chr4g0423101
rosa_laevigata RLG00000007585
rosa_roxburghii Rroxscaffold_5G00365180
rosa_rugosa Rorug04G0183900
rosa_samantha Rh4AG243400 Rh4BG248100 Rh4CG258000 Rh4DG243300
rosa_wichuraiana Rw4G021000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 297
AccBSI CCGCTC 1 cut(s) 458
AciI CCGC 3 cut(s) 89, 108, 458
AcoI YGGCCR 1 cut(s) 372
AcsI RAATTY 1 cut(s) 172
AcuI CTGAAG 1 cut(s) 390
AfaI GTAC 3 cut(s) 46, 272, 311
AflIII ACRYGT 1 cut(s) 267
AgsI TTSAA 1 cut(s) 218
AjuI GAANNNNNNNTTGG 2 cut(s) 194, 226
AluBI AGCT 2 cut(s) 392, 410
AluI AGCT 2 cut(s) 392, 410
AoxI GGCC 2 cut(s) 105, 372
ApeKI GCWGC 1 cut(s) 294
ApoI RAATTY 1 cut(s) 172
AsuHPI GGTGA 2 cut(s) 83, 127
BalI TGGCCA 1 cut(s) 374
BbvI GCAGC 1 cut(s) 306
BccI CCATC 2 cut(s) 68, 319
BclI TGATCA 1 cut(s) 117
BfuAI ACCTGC 1 cut(s) 297
BisI GCNGC 2 cut(s) 108, 295
BlsI GCNGC 2 cut(s) 109, 296
BmcAI AGTACT 1 cut(s) 46
BsaXI ACNNNNNCTCC 2 cut(s) 293, 323
Bse3DI GCAATG 1 cut(s) 355
BseGI GGATG 1 cut(s) 334
BseMI GCAATG 1 cut(s) 355
BseRI GAGGAG 2 cut(s) 347, 350
BseXI GCAGC 1 cut(s) 306
BsgI GTGCAG 1 cut(s) 325
BshFI GGCC 2 cut(s) 107, 374
BslFI GGGAC 1 cut(s) 21
BsmFI GGGAC 1 cut(s) 21
BsnI GGCC 2 cut(s) 107, 374
Bsp1407I TGTACA 1 cut(s) 270
Bsp143I GATC 1 cut(s) 117
BspACI CCGC 3 cut(s) 89, 108, 458
BspANI GGCC 2 cut(s) 107, 374
BspMI ACCTGC 1 cut(s) 297
BsrBI CCGCTC 1 cut(s) 458
BsrDI GCAATG 1 cut(s) 355
BsrGI TGTACA 1 cut(s) 270
BssMI GATC 1 cut(s) 117
BstAUI TGTACA 1 cut(s) 270
BstC8I GCNNGC 1 cut(s) 236
BstDEI CTNAG 1 cut(s) 11
BstF5I GGATG 1 cut(s) 334
BstKTI GATC 1 cut(s) 120
BstMBI GATC 1 cut(s) 117
BstMWI GCNNNNNNNGC 4 cut(s) 59, 231, 294, 303
BstNSI RCATGY 1 cut(s) 271
BstV1I GCAGC 1 cut(s) 306
BsuRI GGCC 2 cut(s) 107, 374
BtsCI GGATG 1 cut(s) 334
BtsI GCAGTG 1 cut(s) 358
BtsIMutI CAGTG 1 cut(s) 358
BveI ACCTGC 1 cut(s) 297
Cac8I GCNNGC 1 cut(s) 236
Csp6I GTAC 3 cut(s) 45, 271, 310
CviAII CATG 2 cut(s) 268, 376
CviJI RGCY 6 cut(s) 107, 288, 374, 392, 410, 426
CviKI_1 RGCY 6 cut(s) 107, 288, 374, 392, 410, 426
CviQI GTAC 3 cut(s) 45, 271, 310
DdeI CTNAG 1 cut(s) 11
DpnI GATC 1 cut(s) 119
DpnII GATC 1 cut(s) 117
EaeI YGGCCR 1 cut(s) 372
Eco57I CTGAAG 1 cut(s) 390
FaeI CATG 2 cut(s) 271, 379
FaiI YATR 3 cut(s) 113, 269, 377
FaqI GGGAC 1 cut(s) 21
FatI CATG 2 cut(s) 267, 375
FauI CCCGC 2 cut(s) 96, 451
FbaI TGATCA 1 cut(s) 117
Fnu4HI GCNGC 2 cut(s) 108, 295
FokI GGATG 1 cut(s) 341
Fsp4HI GCNGC 2 cut(s) 108, 295
GluI GCNGC 2 cut(s) 108, 295
HaeIII GGCC 2 cut(s) 107, 374
Hin1II CATG 2 cut(s) 271, 379
HphI GGTGA 2 cut(s) 83, 127
Hpy188I TCNGA 1 cut(s) 318
Hpy188III TCNNGA 1 cut(s) 420
HpyAV CCTTC 1 cut(s) 148
HpyCH4V TGCA 3 cut(s) 294, 306, 358
HpyF10VI GCNNNNNNNGC 4 cut(s) 59, 231, 294, 303
HpyF3I CTNAG 1 cut(s) 11
Hsp92II CATG 2 cut(s) 271, 379
Ksp22I TGATCA 1 cut(s) 117
Kzo9I GATC 1 cut(s) 117
LmnI GCTCC 1 cut(s) 444
LpnPI CCDG 3 cut(s) 248, 292, 433
Lsp1109I GCAGC 1 cut(s) 306
MalI GATC 1 cut(s) 119
MbiI CCGCTC 1 cut(s) 458
MboI GATC 1 cut(s) 117
MboII GAAGA 6 cut(s) 387, 390, 393, 396, 405, 408
MlsI TGGCCA 1 cut(s) 374
MluCI AATT 3 cut(s) 172, 208, 385
MluNI TGGCCA 1 cut(s) 374
MnlI CCTC 4 cut(s) 157, 325, 328, 416
Mox20I TGGCCA 1 cut(s) 374
MscI TGGCCA 1 cut(s) 374
MseI TTAA 2 cut(s) 99, 177
MslI CAYNNNNRTG 1 cut(s) 266
Msp20I TGGCCA 1 cut(s) 374
MwoI GCNNNNNNNGC 4 cut(s) 59, 231, 294, 303
NdeII GATC 1 cut(s) 117
NlaIII CATG 2 cut(s) 271, 379
NspI RCATGY 1 cut(s) 271
PciI ACATGT 1 cut(s) 267
PkrI GCNGC 2 cut(s) 109, 296
PscI ACATGT 1 cut(s) 267
RsaI GTAC 3 cut(s) 46, 272, 311
RsaNI GTAC 3 cut(s) 45, 271, 310
RseI CAYNNNNRTG 1 cut(s) 266
SaqAI TTAA 2 cut(s) 99, 177
SatI GCNGC 2 cut(s) 108, 295
Sau3AI GATC 1 cut(s) 117
ScaI AGTACT 1 cut(s) 46
SetI ASST 3 cut(s) 311, 394, 412
SmiMI CAYNNNNRTG 1 cut(s) 266
Sse9I AATT 3 cut(s) 172, 208, 385
SsiI CCGC 3 cut(s) 89, 108, 458
TasI AATT 3 cut(s) 172, 208, 385
TatI WGTACW 2 cut(s) 44, 270
TauI GCSGC 1 cut(s) 110
Tru1I TTAA 2 cut(s) 99, 177
Tru9I TTAA 2 cut(s) 99, 177
TscAI CASTG 1 cut(s) 365
TseI GCWGC 1 cut(s) 294
TspDTI ATGAA 2 cut(s) 366, 392
TspRI CASTG 1 cut(s) 365
XapI RAATTY 1 cut(s) 172
XceI RCATGY 1 cut(s) 271
ZrmI AGTACT 1 cut(s) 46
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.