pycom16g14040

zinc-finger of the FCS-type, C2-C2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0015420
Physical Location & Seq
Forward (+)
10065472 .. 10066128
657 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g14040.1

Sequence Viewer

Length: 447 bp
ATGGATATGGTGGGACTTAGCATAGTATTGGAAGAAGGTCAGAAGGGGAGTGGAGTTAACAAAAAAATTCCACAAGTAATTAACAAAGCCACCATGGTTGTCATCAACAAGCCTTTTTCTTCTTCTTCTTCTTCAAGCCCTTCACAAATAACCCACAAAAGTTTTAACTTTTCTTCTCACTCGTCCTCACCCTCCTTCTTTGGACAACCAAGTTTTCTCGACCAATGCTTTCTCTGCAAGCAGAAGCTCTTACCTGGCAAGGACATCTACATGTACAAGGGGGACAGGGGATTCTGCAGCGTGGACTGCAGGTACAGGCAGATTTTCATGGACGAGGAAGAGATTGTTCGCAAGGAGAAGCAGAAGTACTGTTCGCCATCTTCTTCTTCTGCTTCCTCTGATCAGCGCAAAGGGACCAGAAACCGAGCGGGTGGATTTGCCTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-FLZ

Protein Analysis

149

Amino Acids

16.48

Weight (kDa)

9.36

Isoelectric Point (pI)

60.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-FLZ PF04570 67 - 113 6.7e-22 zinc-finger of the FCS-type, C2-C2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015420)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G49120
fragaria_vesca FvH4_4g18540
malus_domestica MD13G1166200.v1.1 MD16G1166000.v1.1
prunus_persica Prupe.1G132700_v2.0.a1
pyrus_communis pycom13g14200 pycom16g14040
rosa_chinensis RchiOBHm_Chr4g0423101
rosa_laevigata RLG00000007585
rosa_roxburghii Rroxscaffold_5G00365180
rosa_rugosa Rorug04G0183900
rosa_samantha Rh4AG243400 Rh4BG248100 Rh4CG258000 Rh4DG243300
rosa_wichuraiana Rw4G021000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 300
AccBSI CCGCTC 1 cut(s) 428
AciI CCGC 1 cut(s) 428
AcsI RAATTY 1 cut(s) 66
AfaI GTAC 3 cut(s) 275, 314, 368
AflIII ACRYGT 1 cut(s) 270
AgsI TTSAA 1 cut(s) 135
AjnI CCWGG 1 cut(s) 253
AluBI AGCT 1 cut(s) 247
AluI AGCT 1 cut(s) 247
ApeKI GCWGC 1 cut(s) 297
ApoI RAATTY 1 cut(s) 66
AspLEI GCGC 1 cut(s) 408
AspS9I GGNCC 1 cut(s) 414
AsuHPI GGTGA 1 cut(s) 180
AvaII GGWCC 1 cut(s) 414
BarI GAAGNNNNNNTAC 2 cut(s) 350, 382
BbvI GCAGC 1 cut(s) 309
BccI CCATC 1 cut(s) 385
BciT130I CCWGG 1 cut(s) 255
BclI TGATCA 1 cut(s) 400
BfmI CTRYAG 2 cut(s) 295, 307
BfuAI ACCTGC 1 cut(s) 300
BisI GCNGC 1 cut(s) 298
BlsI GCNGC 1 cut(s) 299
BmcAI AGTACT 1 cut(s) 368
Bme1390I CCNGG 1 cut(s) 255
Bme18I GGWCC 1 cut(s) 414
BmgT120I GGNCC 1 cut(s) 414
BmiI GGNNCC 1 cut(s) 415
BmrFI CCNGG 1 cut(s) 255
BsaJI CCNNGG 1 cut(s) 93
BseBI CCWGG 1 cut(s) 255
BseDI CCNNGG 1 cut(s) 93
BseXI GCAGC 1 cut(s) 309
BslFI GGGAC 3 cut(s) 27, 296, 427
BsmFI GGGAC 3 cut(s) 27, 296, 427
Bsp1407I TGTACA 1 cut(s) 273
Bsp143I GATC 1 cut(s) 400
Bsp19I CCATGG 1 cut(s) 93
BspACI CCGC 1 cut(s) 428
BspLI GGNNCC 1 cut(s) 415
BspMAI CTGCAG 2 cut(s) 299, 311
BspMI ACCTGC 1 cut(s) 300
BsrBI CCGCTC 1 cut(s) 428
BsrGI TGTACA 1 cut(s) 273
BssECI CCNNGG 1 cut(s) 93
BssMI GATC 1 cut(s) 400
BssT1I CCWWGG 1 cut(s) 93
Bst2UI CCWGG 1 cut(s) 255
Bst4CI ACNGT 1 cut(s) 371
Bst6I CTCTTC 1 cut(s) 333
BstAUI TGTACA 1 cut(s) 273
BstC8I GCNNGC 1 cut(s) 239
BstDEI CTNAG 1 cut(s) 17
BstDSI CCRYGG 1 cut(s) 93
BstHHI GCGC 1 cut(s) 408
BstKTI GATC 1 cut(s) 403
BstMBI GATC 1 cut(s) 400
BstMWI GCNNNNNNNGC 2 cut(s) 234, 306
BstNI CCWGG 1 cut(s) 255
BstNSI RCATGY 1 cut(s) 274
BstSCI CCNGG 1 cut(s) 253
BstSFI CTRYAG 2 cut(s) 295, 307
BstV1I GCAGC 1 cut(s) 309
BtgI CCRYGG 1 cut(s) 93
BveI ACCTGC 1 cut(s) 300
Cac8I GCNNGC 1 cut(s) 239
CfoI GCGC 1 cut(s) 408
Cfr13I GGNCC 1 cut(s) 414
Csp6I GTAC 3 cut(s) 274, 313, 367
CspCI CAANNNNNGTGG 2 cut(s) 79, 114
CviAII CATG 3 cut(s) 94, 271, 328
CviJI RGCY 4 cut(s) 89, 112, 138, 247
CviKI_1 RGCY 4 cut(s) 89, 112, 138, 247
CviQI GTAC 3 cut(s) 274, 313, 367
DdeI CTNAG 1 cut(s) 17
DpnI GATC 1 cut(s) 402
DpnII GATC 1 cut(s) 400
Eam1104I CTCTTC 1 cut(s) 333
EarI CTCTTC 1 cut(s) 333
Eco130I CCWWGG 1 cut(s) 93
Eco47I GGWCC 1 cut(s) 414
EcoRII CCWGG 1 cut(s) 253
EcoT14I CCWWGG 1 cut(s) 93
ErhI CCWWGG 1 cut(s) 93
FaeI CATG 3 cut(s) 97, 274, 331
FaiI YATR 5 cut(s) 8, 23, 95, 272, 329
FaqI GGGAC 3 cut(s) 27, 296, 427
FatI CATG 3 cut(s) 93, 270, 327
FauI CCCGC 1 cut(s) 421
FbaI TGATCA 1 cut(s) 400
Fnu4HI GCNGC 1 cut(s) 298
Fsp4HI GCNGC 1 cut(s) 298
GlaI GCGC 1 cut(s) 407
GluI GCNGC 1 cut(s) 298
HhaI GCGC 1 cut(s) 408
Hin1II CATG 3 cut(s) 97, 274, 331
Hin6I GCGC 1 cut(s) 406
HinP1I GCGC 1 cut(s) 406
HincII GTYRAC 1 cut(s) 58
HindII GTYRAC 1 cut(s) 58
HinfI GANTC 1 cut(s) 291
HpaI GTTAAC 1 cut(s) 58
HphI GGTGA 1 cut(s) 180
Hpy166II GTNNAC 2 cut(s) 58, 304
Hpy188I TCNGA 2 cut(s) 42, 400
Hpy188III TCNNGA 1 cut(s) 218
Hpy8I GTNNAC 2 cut(s) 58, 304
HpyAV CCTTC 4 cut(s) 29, 37, 150, 205
HpyCH4III ACNGT 1 cut(s) 371
HpyCH4V TGCA 3 cut(s) 237, 297, 309
HpyF10VI GCNNNNNNNGC 2 cut(s) 234, 306
HpyF3I CTNAG 1 cut(s) 17
Hsp92II CATG 3 cut(s) 97, 274, 331
HspAI GCGC 1 cut(s) 406
Ksp22I TGATCA 1 cut(s) 400
KspAI GTTAAC 1 cut(s) 58
Kzo9I GATC 1 cut(s) 400
LpnPI CCDG 6 cut(s) 240, 267, 271, 295, 301, 430
Lsp1109I GCAGC 1 cut(s) 309
MalI GATC 1 cut(s) 402
MbiI CCGCTC 1 cut(s) 428
MboI GATC 1 cut(s) 400
MluCI AATT 2 cut(s) 66, 78
MnlI CCTC 4 cut(s) 196, 202, 328, 406
MseI TTAA 3 cut(s) 57, 81, 165
MslI CAYNNNNRTG 1 cut(s) 269
MspR9I CCNGG 1 cut(s) 255
MvaI CCWGG 1 cut(s) 255
MwoI GCNNNNNNNGC 2 cut(s) 234, 306
NcoI CCATGG 1 cut(s) 93
NdeII GATC 1 cut(s) 400
NlaIII CATG 3 cut(s) 97, 274, 331
NlaIV GGNNCC 1 cut(s) 415
NspI RCATGY 1 cut(s) 274
PciI ACATGT 1 cut(s) 270
PfeI GAWTC 1 cut(s) 291
PkrI GCNGC 1 cut(s) 299
PscI ACATGT 1 cut(s) 270
Psp6I CCWGG 1 cut(s) 253
PspGI CCWGG 1 cut(s) 253
PspN4I GGNNCC 1 cut(s) 415
PspPI GGNCC 1 cut(s) 414
PstI CTGCAG 2 cut(s) 299, 311
RsaI GTAC 3 cut(s) 275, 314, 368
RsaNI GTAC 3 cut(s) 274, 313, 367
RseI CAYNNNNRTG 1 cut(s) 269
SaqAI TTAA 3 cut(s) 57, 81, 165
SatI GCNGC 1 cut(s) 298
Sau3AI GATC 1 cut(s) 400
Sau96I GGNCC 1 cut(s) 414
ScaI AGTACT 1 cut(s) 368
ScrFI CCNGG 1 cut(s) 255
SetI ASST 4 cut(s) 40, 249, 256, 314
SfcI CTRYAG 2 cut(s) 295, 307
SinI GGWCC 1 cut(s) 414
SmiMI CAYNNNNRTG 1 cut(s) 269
Sse9I AATT 2 cut(s) 66, 78
SsiI CCGC 1 cut(s) 428
StyD4I CCNGG 1 cut(s) 253
StyI CCWWGG 1 cut(s) 93
TaaI ACNGT 1 cut(s) 371
TaqI TCGA 1 cut(s) 219
TasI AATT 2 cut(s) 66, 78
TatI WGTACW 2 cut(s) 273, 366
TfiI GAWTC 1 cut(s) 291
Tru1I TTAA 3 cut(s) 57, 81, 165
Tru9I TTAA 3 cut(s) 57, 81, 165
TseI GCWGC 1 cut(s) 297
TspDTI ATGAA 1 cut(s) 316
VpaK11BI GGWCC 1 cut(s) 414
XapI RAATTY 1 cut(s) 66
XceI RCATGY 1 cut(s) 274
ZrmI AGTACT 1 cut(s) 368
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.