RLG00000007585

zinc-finger of the FCS-type, C2-C2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0015420
Physical Location & Seq
Forward (+)
18641289 .. 18641979
691 bp
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UTR
Exon/CDS
Intron
RLM00000007585

Sequence Viewer

Length: 480 bp
ATGGTGGGACTTAGTGTATTATTGGAAGGCCAAAATAGTAGTACTACTGCTACTACTGCTGTTGGTGGTGATGGCAAGAAAATCCCGCAAGTTATTAACAAGGCCACTATGGTGATCAATACCAACACCAAACCCTTCTCTCCCTCTGCTCTGCCTTATTACCCCAAAAATTTTAACCACTCTCCCTATTTGCCACCCAATCCCAATTTCCTTGAAAAATGCTTTCTGTGCAAGCAGAAACTCTTGCTTGGCAAAGACATCTACATGTACAAGGGAGATAGGGGCTTTTGCAGCGTGGAGTGCAGGTACAATCAGATTTTGATGGATGAGGAGGAGATTGTTCGGAATGAAATGCACTGCTCAATGGTGGCCATGAAACCCAATTCAGCTTCTTCTTCTTCAACCTCTTCAGCTTCTTCTTCCAGAGGCTCAAACCGAAACAAAGGGAGCAGAAACAGAGCGGGTGGATTTGCCTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-FLZ

Protein Analysis

160

Amino Acids

17.42

Weight (kDa)

9.36

Isoelectric Point (pI)

47.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-FLZ PF04570 66 - 111 4.2e-22 zinc-finger of the FCS-type, C2-C2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015420)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G49120
fragaria_vesca FvH4_4g18540
malus_domestica MD13G1166200.v1.1 MD16G1166000.v1.1
prunus_persica Prupe.1G132700_v2.0.a1
pyrus_communis pycom13g14200 pycom16g14040
rosa_chinensis RchiOBHm_Chr4g0423101
rosa_laevigata RLG00000007585
rosa_roxburghii Rroxscaffold_5G00365180
rosa_rugosa Rorug04G0183900
rosa_samantha Rh4AG243400 Rh4BG248100 Rh4CG258000 Rh4DG243300
rosa_wichuraiana Rw4G021000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 294
AccBSI CCGCTC 1 cut(s) 461
AciI CCGC 2 cut(s) 86, 461
AcoI YGGCCR 1 cut(s) 369
AcsI RAATTY 1 cut(s) 169
AcuI CTGAAG 1 cut(s) 393
AfaI GTAC 3 cut(s) 43, 269, 308
AflIII ACRYGT 1 cut(s) 264
AgsI TTSAA 2 cut(s) 215, 402
AjuI GAANNNNNNNTTGG 2 cut(s) 191, 223
AleI CACNNNNGTG 1 cut(s) 110
AluBI AGCT 2 cut(s) 389, 413
AluI AGCT 2 cut(s) 389, 413
AoxI GGCC 3 cut(s) 28, 102, 369
ApeKI GCWGC 1 cut(s) 291
ApoI RAATTY 1 cut(s) 169
AsuHPI GGTGA 2 cut(s) 80, 124
BalI TGGCCA 1 cut(s) 371
BbvI GCAGC 1 cut(s) 303
BccI CCATC 2 cut(s) 65, 316
BclI TGATCA 1 cut(s) 114
BfuAI ACCTGC 1 cut(s) 294
BisI GCNGC 1 cut(s) 292
BlsI GCNGC 1 cut(s) 293
BmcAI AGTACT 1 cut(s) 43
BsaXI ACNNNNNCTCC 2 cut(s) 290, 320
BseGI GGATG 1 cut(s) 331
BseRI GAGGAG 2 cut(s) 344, 347
BseXI GCAGC 1 cut(s) 303
BsgI GTGCAG 1 cut(s) 322
BshFI GGCC 3 cut(s) 30, 104, 371
BslFI GGGAC 1 cut(s) 21
BsmFI GGGAC 1 cut(s) 21
BsnI GGCC 3 cut(s) 30, 104, 371
Bsp1407I TGTACA 1 cut(s) 267
Bsp143I GATC 1 cut(s) 114
BspACI CCGC 2 cut(s) 86, 461
BspANI GGCC 3 cut(s) 30, 104, 371
BspMI ACCTGC 1 cut(s) 294
BsrBI CCGCTC 1 cut(s) 461
BsrGI TGTACA 1 cut(s) 267
BssMI GATC 1 cut(s) 114
Bst6I CTCTTC 1 cut(s) 412
BstAUI TGTACA 1 cut(s) 267
BstC8I GCNNGC 1 cut(s) 233
BstDEI CTNAG 1 cut(s) 11
BstF5I GGATG 1 cut(s) 331
BstKTI GATC 1 cut(s) 117
BstMBI GATC 1 cut(s) 114
BstMWI GCNNNNNNNGC 4 cut(s) 56, 228, 291, 300
BstNSI RCATGY 1 cut(s) 268
BstV1I GCAGC 1 cut(s) 303
BsuRI GGCC 3 cut(s) 30, 104, 371
BtsCI GGATG 1 cut(s) 331
BtsI GCAGTG 1 cut(s) 355
BtsIMutI CAGTG 1 cut(s) 355
BveI ACCTGC 1 cut(s) 294
Cac8I GCNNGC 1 cut(s) 233
Csp6I GTAC 3 cut(s) 42, 268, 307
CviAII CATG 2 cut(s) 265, 373
CviJI RGCY 7 cut(s) 30, 104, 285, 371, 389, 413, 429
CviKI_1 RGCY 7 cut(s) 30, 104, 285, 371, 389, 413, 429
CviQI GTAC 3 cut(s) 42, 268, 307
DdeI CTNAG 1 cut(s) 11
DpnI GATC 1 cut(s) 116
DpnII GATC 1 cut(s) 114
EaeI YGGCCR 1 cut(s) 369
Eam1104I CTCTTC 1 cut(s) 412
EarI CTCTTC 1 cut(s) 412
Eco57I CTGAAG 1 cut(s) 393
FaeI CATG 2 cut(s) 268, 376
FaiI YATR 3 cut(s) 110, 266, 374
FaqI GGGAC 1 cut(s) 21
FatI CATG 2 cut(s) 264, 372
FauI CCCGC 2 cut(s) 93, 454
FbaI TGATCA 1 cut(s) 114
Fnu4HI GCNGC 1 cut(s) 292
FokI GGATG 1 cut(s) 338
Fsp4HI GCNGC 1 cut(s) 292
GluI GCNGC 1 cut(s) 292
HaeIII GGCC 3 cut(s) 30, 104, 371
Hin1II CATG 2 cut(s) 268, 376
HphI GGTGA 2 cut(s) 80, 124
Hpy188I TCNGA 2 cut(s) 315, 345
Hpy188III TCNNGA 1 cut(s) 423
HpyAV CCTTC 2 cut(s) 20, 145
HpyCH4V TGCA 4 cut(s) 231, 291, 303, 355
HpyF10VI GCNNNNNNNGC 4 cut(s) 56, 228, 291, 300
HpyF3I CTNAG 1 cut(s) 11
Hsp92II CATG 2 cut(s) 268, 376
Ksp22I TGATCA 1 cut(s) 114
Kzo9I GATC 1 cut(s) 114
LmnI GCTCC 1 cut(s) 447
LpnPI CCDG 2 cut(s) 289, 436
Lsp1109I GCAGC 1 cut(s) 303
MalI GATC 1 cut(s) 116
MbiI CCGCTC 1 cut(s) 461
MboI GATC 1 cut(s) 114
MboII GAAGA 6 cut(s) 384, 387, 390, 399, 408, 411
MlsI TGGCCA 1 cut(s) 371
MluCI AATT 3 cut(s) 169, 205, 382
MluNI TGGCCA 1 cut(s) 371
MnlI CCTC 5 cut(s) 154, 322, 325, 415, 419
Mox20I TGGCCA 1 cut(s) 371
MscI TGGCCA 1 cut(s) 371
MseI TTAA 2 cut(s) 96, 174
MslI CAYNNNNRTG 2 cut(s) 110, 263
Msp20I TGGCCA 1 cut(s) 371
MwoI GCNNNNNNNGC 4 cut(s) 56, 228, 291, 300
NdeII GATC 1 cut(s) 114
NlaIII CATG 2 cut(s) 268, 376
NspI RCATGY 1 cut(s) 268
OliI CACNNNNGTG 1 cut(s) 110
PciI ACATGT 1 cut(s) 264
PkrI GCNGC 1 cut(s) 293
PscI ACATGT 1 cut(s) 264
RsaI GTAC 3 cut(s) 43, 269, 308
RsaNI GTAC 3 cut(s) 42, 268, 307
RseI CAYNNNNRTG 2 cut(s) 110, 263
SaqAI TTAA 2 cut(s) 96, 174
SatI GCNGC 1 cut(s) 292
Sau3AI GATC 1 cut(s) 114
ScaI AGTACT 1 cut(s) 43
SetI ASST 4 cut(s) 308, 391, 407, 415
SmiMI CAYNNNNRTG 2 cut(s) 110, 263
Sse9I AATT 3 cut(s) 169, 205, 382
SsiI CCGC 2 cut(s) 86, 461
TasI AATT 3 cut(s) 169, 205, 382
TatI WGTACW 2 cut(s) 41, 267
Tru1I TTAA 2 cut(s) 96, 174
Tru9I TTAA 2 cut(s) 96, 174
TscAI CASTG 1 cut(s) 362
TseI GCWGC 1 cut(s) 291
TspDTI ATGAA 2 cut(s) 363, 389
TspRI CASTG 1 cut(s) 362
XapI RAATTY 1 cut(s) 169
XceI RCATGY 1 cut(s) 268
ZrmI AGTACT 1 cut(s) 43
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.