pycom13g14200

zinc-finger of the FCS-type, C2-C2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0015420
Physical Location & Seq
Forward (+)
10186757 .. 10187460
704 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g14200.1

Sequence Viewer

Length: 459 bp
ATGGTGGGACTTAGCATAGTATTGGAAGGAGGTCAAAAGGGGAGTGGAGTTAGCAAAAATGTCCCACAAGTAATTAACAAAGCCACCATGATTGTCATCAACAAGCCTTCTTCTTCTTCTTCTTTTTCTTTTTTGCCTTCTCCTTCAAGCCCTTCACAAATAACCCACACAAGTTTTCATTTTTCTTCTCACTCCTCAGTCTCACCCTCCTCCTTTGGGCAACCAACTTTTCTTGACCAATGCTTTCTCTGCAAGCAGAAACTCTTGCCTGGCAAGGACATCTACATGTACAAGGGGGACAGGGGATTTTGCAGCGTGGACTGCAGGTACAGGCAGATTTTCATGGACGAGGAAGAGATTGTTCACAAAGAGAAGCAGAAGTACTGTTCTTCTTCTCCTTCAGCTTCCTCTGATCAGCGCAAAGGGACCAGAAACCGAGCGGGTGGATTTGCCTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-FLZ

Protein Analysis

153

Amino Acids

16.69

Weight (kDa)

9.28

Isoelectric Point (pI)

61.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-FLZ PF04570 72 - 118 4.9e-22 zinc-finger of the FCS-type, C2-C2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015420)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G49120
fragaria_vesca FvH4_4g18540
malus_domestica MD13G1166200.v1.1 MD16G1166000.v1.1
prunus_persica Prupe.1G132700_v2.0.a1
pyrus_communis pycom13g14200 pycom16g14040
rosa_chinensis RchiOBHm_Chr4g0423101
rosa_laevigata RLG00000007585
rosa_roxburghii Rroxscaffold_5G00365180
rosa_rugosa Rorug04G0183900
rosa_samantha Rh4AG243400 Rh4BG248100 Rh4CG258000 Rh4DG243300
rosa_wichuraiana Rw4G021000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 315
AccBSI CCGCTC 1 cut(s) 440
AciI CCGC 1 cut(s) 440
AcuI CTGAAG 1 cut(s) 384
AfaI GTAC 3 cut(s) 290, 329, 383
AfiI CCNNNNNNNGG 1 cut(s) 216
AflIII ACRYGT 1 cut(s) 285
AgsI TTSAA 1 cut(s) 147
AjnI CCWGG 1 cut(s) 268
AluBI AGCT 1 cut(s) 404
AluI AGCT 1 cut(s) 404
Alw26I GTCTC 1 cut(s) 205
ApeKI GCWGC 1 cut(s) 312
AspLEI GCGC 1 cut(s) 420
AspS9I GGNCC 1 cut(s) 426
AsuHPI GGTGA 1 cut(s) 195
AvaII GGWCC 1 cut(s) 426
BarI GAAGNNNNNNTAC 2 cut(s) 365, 397
BbvI GCAGC 1 cut(s) 324
BciT130I CCWGG 1 cut(s) 270
BclI TGATCA 1 cut(s) 412
BcoDI GTCTC 1 cut(s) 205
BfmI CTRYAG 1 cut(s) 322
BfuAI ACCTGC 1 cut(s) 315
BisI GCNGC 1 cut(s) 313
BlsI GCNGC 1 cut(s) 314
BmcAI AGTACT 1 cut(s) 383
Bme1390I CCNGG 1 cut(s) 270
Bme18I GGWCC 1 cut(s) 426
BmgT120I GGNCC 1 cut(s) 426
BmiI GGNNCC 1 cut(s) 427
BmrFI CCNGG 1 cut(s) 270
BsaBI GATNNNNATC 1 cut(s) 95
Bsc4I CCNNNNNNNGG 1 cut(s) 216
Bse8I GATNNNNATC 1 cut(s) 95
BseBI CCWGG 1 cut(s) 270
BseJI GATNNNNATC 1 cut(s) 95
BseLI CCNNNNNNNGG 1 cut(s) 216
BseMII CTCAG 1 cut(s) 210
BseRI GAGGAG 2 cut(s) 184, 199
BseXI GCAGC 1 cut(s) 324
BslFI GGGAC 4 cut(s) 21, 47, 311, 439
BslI CCNNNNNNNGG 1 cut(s) 216
BsmAI GTCTC 1 cut(s) 205
BsmFI GGGAC 4 cut(s) 21, 47, 311, 439
Bsp1407I TGTACA 1 cut(s) 288
Bsp143I GATC 1 cut(s) 412
BspACI CCGC 1 cut(s) 440
BspCNI CTCAG 1 cut(s) 209
BspLI GGNNCC 1 cut(s) 427
BspMAI CTGCAG 1 cut(s) 326
BspMI ACCTGC 1 cut(s) 315
BsrBI CCGCTC 1 cut(s) 440
BsrGI TGTACA 1 cut(s) 288
BssMI GATC 1 cut(s) 412
Bst2UI CCWGG 1 cut(s) 270
Bst4CI ACNGT 1 cut(s) 386
Bst6I CTCTTC 1 cut(s) 348
BstAUI TGTACA 1 cut(s) 288
BstC8I GCNNGC 1 cut(s) 254
BstDEI CTNAG 2 cut(s) 11, 196
BstHHI GCGC 1 cut(s) 420
BstKTI GATC 1 cut(s) 415
BstMAI GTCTC 1 cut(s) 205
BstMBI GATC 1 cut(s) 412
BstMWI GCNNNNNNNGC 2 cut(s) 249, 321
BstNI CCWGG 1 cut(s) 270
BstNSI RCATGY 1 cut(s) 289
BstSCI CCNGG 1 cut(s) 268
BstSFI CTRYAG 1 cut(s) 322
BstV1I GCAGC 1 cut(s) 324
BveI ACCTGC 1 cut(s) 315
Cac8I GCNNGC 1 cut(s) 254
CfoI GCGC 1 cut(s) 420
Cfr13I GGNCC 1 cut(s) 426
Csp6I GTAC 3 cut(s) 289, 328, 382
CspCI CAANNNNNGTGG 2 cut(s) 73, 108
CviAII CATG 3 cut(s) 88, 286, 343
CviJI RGCY 4 cut(s) 83, 106, 150, 404
CviKI_1 RGCY 4 cut(s) 83, 106, 150, 404
CviQI GTAC 3 cut(s) 289, 328, 382
DdeI CTNAG 2 cut(s) 11, 196
DpnI GATC 1 cut(s) 414
DpnII GATC 1 cut(s) 412
Eam1104I CTCTTC 1 cut(s) 348
EarI CTCTTC 1 cut(s) 348
Eco47I GGWCC 1 cut(s) 426
Eco57I CTGAAG 1 cut(s) 384
EcoRII CCWGG 1 cut(s) 268
FaeI CATG 3 cut(s) 91, 289, 346
FaiI YATR 4 cut(s) 17, 89, 287, 344
FaqI GGGAC 4 cut(s) 21, 47, 311, 439
FatI CATG 3 cut(s) 87, 285, 342
FauI CCCGC 1 cut(s) 433
FbaI TGATCA 1 cut(s) 412
Fnu4HI GCNGC 1 cut(s) 313
Fsp4HI GCNGC 1 cut(s) 313
GlaI GCGC 1 cut(s) 419
GluI GCNGC 1 cut(s) 313
HhaI GCGC 1 cut(s) 420
Hin1II CATG 3 cut(s) 91, 289, 346
Hin6I GCGC 1 cut(s) 418
HinP1I GCGC 1 cut(s) 418
HphI GGTGA 1 cut(s) 195
Hpy166II GTNNAC 2 cut(s) 319, 364
Hpy188I TCNGA 1 cut(s) 412
Hpy188III TCNNGA 1 cut(s) 233
Hpy8I GTNNAC 2 cut(s) 319, 364
HpyAV CCTTC 6 cut(s) 20, 117, 147, 153, 162, 408
HpyCH4III ACNGT 1 cut(s) 386
HpyCH4V TGCA 3 cut(s) 252, 312, 324
HpyF10VI GCNNNNNNNGC 2 cut(s) 249, 321
HpyF3I CTNAG 2 cut(s) 11, 196
Hsp92II CATG 3 cut(s) 91, 289, 346
HspAI GCGC 1 cut(s) 418
Ksp22I TGATCA 1 cut(s) 412
Kzo9I GATC 1 cut(s) 412
LpnPI CCDG 6 cut(s) 255, 282, 286, 310, 316, 442
Lsp1109I GCAGC 1 cut(s) 324
MalI GATC 1 cut(s) 414
MbiI CCGCTC 1 cut(s) 440
MboI GATC 1 cut(s) 412
MboII GAAGA 8 cut(s) 102, 105, 108, 111, 177, 365, 381, 384
MluCI AATT 1 cut(s) 72
MnlI CCTC 6 cut(s) 23, 205, 217, 220, 343, 418
MseI TTAA 1 cut(s) 75
MslI CAYNNNNRTG 1 cut(s) 284
MspR9I CCNGG 1 cut(s) 270
MvaI CCWGG 1 cut(s) 270
MwoI GCNNNNNNNGC 2 cut(s) 249, 321
NdeII GATC 1 cut(s) 412
NlaIII CATG 3 cut(s) 91, 289, 346
NlaIV GGNNCC 1 cut(s) 427
NspI RCATGY 1 cut(s) 289
PciI ACATGT 1 cut(s) 285
PkrI GCNGC 1 cut(s) 314
PscI ACATGT 1 cut(s) 285
Psp6I CCWGG 1 cut(s) 268
PspGI CCWGG 1 cut(s) 268
PspN4I GGNNCC 1 cut(s) 427
PspPI GGNCC 1 cut(s) 426
PstI CTGCAG 1 cut(s) 326
RsaI GTAC 3 cut(s) 290, 329, 383
RsaNI GTAC 3 cut(s) 289, 328, 382
RseI CAYNNNNRTG 1 cut(s) 284
SaqAI TTAA 1 cut(s) 75
SatI GCNGC 1 cut(s) 313
Sau3AI GATC 1 cut(s) 412
Sau96I GGNCC 1 cut(s) 426
ScaI AGTACT 1 cut(s) 383
ScrFI CCNGG 1 cut(s) 270
SetI ASST 3 cut(s) 34, 329, 406
SfcI CTRYAG 1 cut(s) 322
SinI GGWCC 1 cut(s) 426
SmiMI CAYNNNNRTG 1 cut(s) 284
Sse9I AATT 1 cut(s) 72
SsiI CCGC 1 cut(s) 440
StyD4I CCNGG 1 cut(s) 268
TaaI ACNGT 1 cut(s) 386
TasI AATT 1 cut(s) 72
TatI WGTACW 2 cut(s) 288, 381
Tru1I TTAA 1 cut(s) 75
Tru9I TTAA 1 cut(s) 75
TseI GCWGC 1 cut(s) 312
TspDTI ATGAA 2 cut(s) 167, 331
VpaK11BI GGWCC 1 cut(s) 426
XceI RCATGY 1 cut(s) 289
ZrmI AGTACT 1 cut(s) 383
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.