Rorug04G0183900

zinc-finger of the FCS-type, C2-C2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0015420
Physical Location & Seq
Forward (+)
32099905 .. 32100457
553 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0183900.1

Sequence Viewer

Length: 342 bp
ATGGGAGTTGTTCCTGGTGATATAATCAGCATTAAGCTTGGGGATATTATTCCAGCAGATGCTCGTCTCCTCGACTTTGATCCACTGAAAATTGATCAGTCTGCACTTACCGGTGCACTTACCGGTGAGTCACTTCCTGTGACCAAAGGCCCTGGTGACATTGTGTATTTGGGCTCTACATGCAAACAAGGAGAGATTGAAGCTGTGGTGATTGCCACTGGTGTTCATACCTTTTTCGGCAAGGCGGCTCACCTTGTCGATAGCACAAATCAACCGGGCCACTTTCAAAAGAAGTTCAAGCCCCACCGAGCTTGTAATCCTGGATCCGCCCCTGTACACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-FLZ

Protein Analysis

113

Amino Acids

11.81

Weight (kDa)

6.49

Isoelectric Point (pI)

22.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
E1-E2_ATPase PF00122 3 - 86 2.5e-21 P-type ATPase actuator domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015420)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G49120
fragaria_vesca FvH4_4g18540
malus_domestica MD13G1166200.v1.1 MD16G1166000.v1.1
prunus_persica Prupe.1G132700_v2.0.a1
pyrus_communis pycom13g14200 pycom16g14040
rosa_chinensis RchiOBHm_Chr4g0423101
rosa_laevigata RLG00000007585
rosa_roxburghii Rroxscaffold_5G00365180
rosa_rugosa Rorug04G0183900
rosa_samantha Rh4AG243400 Rh4BG248100 Rh4CG258000 Rh4DG243300
rosa_wichuraiana Rw4G021000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 245, 327
AclWI GGATC 3 cut(s) 74, 318, 331
AfaI GTAC 1 cut(s) 336
AgeI ACCGGT 2 cut(s) 110, 122
AgsI TTSAA 3 cut(s) 200, 287, 298
AjnI CCWGG 3 cut(s) 13, 151, 319
AluBI AGCT 3 cut(s) 37, 203, 311
AluI AGCT 3 cut(s) 37, 203, 311
Alw21I GWGCWC 1 cut(s) 118
Alw26I GTCTC 1 cut(s) 71
Alw44I GTGCAC 1 cut(s) 114
AlwI GGATC 3 cut(s) 74, 318, 331
AoxI GGCC 2 cut(s) 148, 277
ApaLI GTGCAC 1 cut(s) 114
AsiGI ACCGGT 2 cut(s) 110, 122
AspS9I GGNCC 2 cut(s) 149, 277
AsuC2I CCSGG 1 cut(s) 276
AsuHPI GGTGA 5 cut(s) 29, 137, 167, 220, 242
BaeGI GKGCMC 1 cut(s) 118
BamHI GGATCC 1 cut(s) 323
BanII GRGCYC 1 cut(s) 176
Bbv12I GWGCWC 1 cut(s) 118
BciT130I CCWGG 3 cut(s) 15, 153, 321
BclI TGATCA 1 cut(s) 94
BcnI CCSGG 1 cut(s) 276
BcoDI GTCTC 1 cut(s) 71
BfaI CTAG 1 cut(s) 340
BisI GCNGC 1 cut(s) 246
BlsI GCNGC 1 cut(s) 247
Bme1390I CCNGG 4 cut(s) 15, 153, 276, 321
BmgT120I GGNCC 2 cut(s) 149, 277
BmiI GGNNCC 1 cut(s) 325
BmrFI CCNGG 4 cut(s) 15, 153, 276, 321
BmsI GCATC 1 cut(s) 49
BpuMI CCSGG 1 cut(s) 276
BsaJI CCNNGG 1 cut(s) 151
BsaWI WCCGGW 2 cut(s) 110, 122
Bse118I RCCGGY 2 cut(s) 110, 122
Bse1I ACTGG 1 cut(s) 223
BseBI CCWGG 3 cut(s) 15, 153, 321
BseDI CCNNGG 1 cut(s) 151
BseNI ACTGG 1 cut(s) 223
BseRI GAGGAG 1 cut(s) 59
BseSI GKGCMC 1 cut(s) 118
BsgI GTGCAG 1 cut(s) 87
BshFI GGCC 2 cut(s) 150, 279
BshTI ACCGGT 2 cut(s) 110, 122
BsiHKAI GWGCWC 1 cut(s) 118
BsiSI CCGG 3 cut(s) 111, 123, 275
BsmAI GTCTC 1 cut(s) 71
BsmBI CGTCTC 1 cut(s) 71
BsnI GGCC 2 cut(s) 150, 279
Bsp1286I GDGCHC 2 cut(s) 118, 176
Bsp1407I TGTACA 1 cut(s) 334
Bsp143I GATC 3 cut(s) 79, 94, 323
BspACI CCGC 2 cut(s) 245, 327
BspANI GGCC 2 cut(s) 150, 279
BspLI GGNNCC 1 cut(s) 325
BspPI GGATC 3 cut(s) 74, 318, 331
BsrFI RCCGGY 2 cut(s) 110, 122
BsrGI TGTACA 1 cut(s) 334
BsrI ACTGG 1 cut(s) 223
BssAI RCCGGY 2 cut(s) 110, 122
BssECI CCNNGG 1 cut(s) 151
BssMI GATC 3 cut(s) 79, 94, 323
Bst2UI CCWGG 3 cut(s) 15, 153, 321
BstAUI TGTACA 1 cut(s) 334
BstKTI GATC 3 cut(s) 82, 97, 326
BstMAI GTCTC 1 cut(s) 71
BstMBI GATC 3 cut(s) 79, 94, 323
BstMWI GCNNNNNNNGC 1 cut(s) 180
BstNI CCWGG 3 cut(s) 15, 153, 321
BstNSI RCATGY 1 cut(s) 183
BstSCI CCNGG 4 cut(s) 13, 151, 274, 319
BstSLI GKGCMC 1 cut(s) 118
BstX2I RGATCY 1 cut(s) 323
BstYI RGATCY 1 cut(s) 323
BsuRI GGCC 2 cut(s) 150, 279
BtsIMutI CAGTG 2 cut(s) 83, 216
Cfr10I RCCGGY 2 cut(s) 110, 122
Cfr13I GGNCC 2 cut(s) 149, 277
Csp6I GTAC 1 cut(s) 335
CspAI ACCGGT 2 cut(s) 110, 122
CspCI CAANNNNNGTGG 2 cut(s) 293, 328
CviAII CATG 1 cut(s) 180
CviJI RGCY 8 cut(s) 37, 150, 174, 203, 248, 279, 301, 311
CviKI_1 RGCY 8 cut(s) 37, 150, 174, 203, 248, 279, 301, 311
CviQI GTAC 1 cut(s) 335
DpnI GATC 3 cut(s) 81, 96, 325
DpnII GATC 3 cut(s) 79, 94, 323
EciI GGCGGA 1 cut(s) 316
Eco24I GRGCYC 1 cut(s) 176
EcoO109I RGGNCCY 1 cut(s) 149
EcoRII CCWGG 3 cut(s) 13, 151, 319
EcoT38I GRGCYC 1 cut(s) 176
Esp3I CGTCTC 1 cut(s) 71
FaeI CATG 1 cut(s) 183
FaiI YATR 3 cut(s) 23, 181, 228
FatI CATG 1 cut(s) 179
FbaI TGATCA 1 cut(s) 94
Fnu4HI GCNGC 1 cut(s) 246
FriOI GRGCYC 1 cut(s) 176
Fsp4HI GCNGC 1 cut(s) 246
FspBI CTAG 1 cut(s) 340
GluI GCNGC 1 cut(s) 246
HaeIII GGCC 2 cut(s) 150, 279
HapII CCGG 3 cut(s) 111, 123, 275
Hin1II CATG 1 cut(s) 183
HindIII AAGCTT 1 cut(s) 35
HinfI GANTC 1 cut(s) 128
HpaII CCGG 3 cut(s) 111, 123, 275
HphI GGTGA 5 cut(s) 29, 137, 167, 220, 242
Hpy166II GTNNAC 2 cut(s) 116, 337
Hpy8I GTNNAC 2 cut(s) 116, 337
HpyCH4V TGCA 3 cut(s) 104, 116, 183
HpyF10VI GCNNNNNNNGC 1 cut(s) 180
Hsp92II CATG 1 cut(s) 183
Ksp22I TGATCA 1 cut(s) 94
Kzo9I GATC 3 cut(s) 79, 94, 323
LweI GCATC 1 cut(s) 49
MaeI CTAG 1 cut(s) 340
MaeIII GTNAC 3 cut(s) 129, 139, 155
MalI GATC 3 cut(s) 81, 96, 325
MboI GATC 3 cut(s) 79, 94, 323
MflI RGATCY 1 cut(s) 323
MhlI GDGCHC 2 cut(s) 118, 176
MluCI AATT 1 cut(s) 90
MlyI GAGTC 1 cut(s) 137
MnlI CCTC 1 cut(s) 80
MseI TTAA 1 cut(s) 33
MspI CCGG 3 cut(s) 111, 123, 275
MspR9I CCNGG 4 cut(s) 15, 153, 276, 321
MvaI CCWGG 3 cut(s) 15, 153, 321
MwoI GCNNNNNNNGC 1 cut(s) 180
NciI CCSGG 1 cut(s) 276
NdeII GATC 3 cut(s) 79, 94, 323
NlaIII CATG 1 cut(s) 183
NlaIV GGNNCC 1 cut(s) 325
NmuCI GTSAC 3 cut(s) 129, 139, 155
NspI RCATGY 1 cut(s) 183
PfoI TCCNGGA 1 cut(s) 319
PinAI ACCGGT 2 cut(s) 110, 122
PkrI GCNGC 1 cut(s) 247
PleI GAGTC 1 cut(s) 136
PpsI GAGTC 1 cut(s) 136
Psp6I CCWGG 3 cut(s) 13, 151, 319
PspGI CCWGG 3 cut(s) 13, 151, 319
PspN4I GGNNCC 1 cut(s) 325
PspPI GGNCC 2 cut(s) 149, 277
PsuI RGATCY 1 cut(s) 323
RsaI GTAC 1 cut(s) 336
RsaNI GTAC 1 cut(s) 335
SaqAI TTAA 1 cut(s) 33
SatI GCNGC 1 cut(s) 246
Sau3AI GATC 3 cut(s) 79, 94, 323
Sau96I GGNCC 2 cut(s) 149, 277
SchI GAGTC 1 cut(s) 137
ScrFI CCNGG 4 cut(s) 15, 153, 276, 321
SduI GDGCHC 2 cut(s) 118, 176
SetI ASST 5 cut(s) 39, 205, 233, 255, 313
SfaNI GCATC 1 cut(s) 49
Sse9I AATT 1 cut(s) 90
SsiI CCGC 2 cut(s) 245, 327
SspMI CTAG 1 cut(s) 340
StyD4I CCNGG 4 cut(s) 13, 151, 274, 319
TaqI TCGA 2 cut(s) 72, 258
TasI AATT 1 cut(s) 90
TatI WGTACW 1 cut(s) 334
TauI GCSGC 1 cut(s) 248
Tru1I TTAA 1 cut(s) 33
Tru9I TTAA 1 cut(s) 33
TscAI CASTG 2 cut(s) 90, 223
TseFI GTSAC 3 cut(s) 129, 139, 155
Tsp45I GTSAC 3 cut(s) 129, 139, 155
TspDTI ATGAA 1 cut(s) 215
TspRI CASTG 2 cut(s) 90, 223
VneI GTGCAC 1 cut(s) 114
XceI RCATGY 1 cut(s) 183
XspI CTAG 1 cut(s) 340
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.