Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008733

Physical Location & Seq

Genomic Coordinates Forward (+)

19953459 .. 19956145

Gene Structure 2687 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G49215.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1350 bp

ATGCCAGTAAGTGTGGCACTAGTTTTGCTGTTGACATTGAGCAGTGTGATTCTGATTAATGGGAGAAGTTACGGCGTCGGAAACATATGCGATCGTGGTCGGAGACCGAGCGAGAGACCACACAGTGTCAAAATCACTGATTTTGGTGCTGTGGGAGATGGGAAAACGTTGAACACACTTGCGTTTCAAAATGCTGTCTTTTATCTAAAGTCTTTCGCTGATAAAGGTGGTGCTCAGCTTTATGTTCCTCCGGGACGGTGGCTCACCGGAAGTTTCAACCTCACCAGTCATCTCACTCTCTTTCTCGAGAAAGACGCCGTCATACTTGCCTCACAGGATCCATCGCATTGGCAAGTCACGGATGCCTTACCGTCATATGGGCGGGGTATTGATCTACCAGGGAAGAGATACATGAGTTTGATAAACGGTGACATGCTACATGATGTAGTAGTAACAGGTGATAACGGTACCATAGATGGGCAAGGCCTTGTTTGGTGGGATCGGTTTAATTCTCATTCTTTAGAGTACAGTCGCCCTCACCTTGTCGAGTTTGTCTCTGCCGAAAATGTCATTGTATCAAATCTTACATTCTTGAACGCTCCGGCTTATACTATCCATTCAGTTTATTGTCGCAATTTATACATTCATAGAGTAACGGCTAATACTTGTCCAGAATCTCCTTATACCATCGGTATTGTCCCAGATTCTTCTGAAAATGTGTGTATCCAAGAATCTAGTATCAACATGGGGTATGATGCCATTTCTCTTAAAAGTGGTTGTGATGAATACGGTTTATCGTATGCAAGACCTACTGCTAATGTCCAGATAAGAAATGTTTACCTTAGAGCAGCTTCTGGTTCCTCCATTTCCTTTGGTAGTGAAATGTCTGGTGGTATATCTGATGTTGAGGTCAGTGATGCTCACATACACAACTCGTTATCCGGGATTGCCTTTAGAACAACAAATGGAAGAGGTGGTTATATTAAGGAGATTGATATTTCCAACATCCATATGGTTAATGTTGGTACTGCATTTCTAGCCAACGGTAGCTTCGGTACTCATCCGGATTCTGGTTTCGATGAAAATGCTTACCCGCTTGTGAGTCACATCAGGTTACATGACATTGTTGGAGAAAACATAAGCACTGCTGGATATTTCTTTGGAACGAAAGAGTCTCCTTTCACTTCGATTTTGTTATCGAATATCTCTCTGTCGATTAAAAACTCGGCTTCCCCTGCTGATTCTTGGCAATGCTCATATGTTGACGGGTCTTCGGAATTCGTAGTCCCTGAACCGTGCCTTGAGCTGAAGAGTTTTGATAGTTACTATGGTAGAGCTGAGGCCTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_28 Pectate_lyase_3

Protein Analysis

449

Amino Acids

48.76

Weight (kDa)

5.4

Isoelectric Point (pI)

40.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pect-lyase_RHGA_epim	PF12708	43 - 89	8.6e-06	Rhamnogalacturonase A/epimerase, pectate lyase-like
Glyco_hydro_28	PF00295	140 - 422	1.2e-31	Glycosyl hydrolases family 28

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008733)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06770 AT3G06770 AT3G06770 AT3G06770 AT3G06770 AT5G49215 AT5G49215
fragaria_vesca	FvH4_4g18930
malus_domestica	MD13G1162000.v1.1 MD16G1161800.v1.1
prunus_persica	Prupe.1G129300_v2.0.a1
pyrus_communis	pycom13g13810 pycom16g13710
rosa_chinensis	RchiOBHm_Chr4g0423821
rosa_laevigata	RLG00000007529
rosa_multiflora	Rmu_sc0003369.1_g000016
rosa_roxburghii	Rroxscaffold_5G00365940
rosa_rugosa	Rorug04G0191000
rosa_samantha	Rh4AG250400 Rh4BG255700 Rh4CG263800 Rh4DG250200
rosa_wichuraiana	Rw4G021450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	467
AccB1I	GGYRCC	1 cut(s)	467
AccIII	TCCGGA	1 cut(s)	1063
AciI	CCGC	2 cut(s)	382, 1094
AclI	AACGTT	1 cut(s)	167
AclWI	GGATC	3 cut(s)	332, 345, 507
AcsI	RAATTY	1 cut(s)	1277
AcuI	CTGAAG	1 cut(s)	1328
AcyI	GRCGYC	2 cut(s)	75, 315
AdeI	CACNNNGTG	1 cut(s)	125
AfaI	GTAC	4 cut(s)	469, 527, 1027, 1057
AfiI	CCNNNNNNNGG	3 cut(s)	377, 477, 1070
AgsI	TTSAA	4 cut(s)	172, 188, 277, 595
AhlI	ACTAGT	1 cut(s)	19
AjnI	CCWGG	1 cut(s)	397
AjuI	GAANNNNNNNTTGG	2 cut(s)	1034, 1066
AluBI	AGCT	5 cut(s)	238, 851, 1050, 1306, 1337
AluI	AGCT	5 cut(s)	238, 851, 1050, 1306, 1337
Alw21I	GWGCWC	1 cut(s)	235
Alw26I	GTCTC	4 cut(s)	97, 109, 559, 1179
AlwI	GGATC	3 cut(s)	332, 345, 507
AlwNI	CAGNNNCTG	1 cut(s)	854
Ama87I	CYCGRG	1 cut(s)	305
Aor13HI	TCCGGA	1 cut(s)	1063
AoxI	GGCC	2 cut(s)	484, 1341
ApeKI	GCWGC	1 cut(s)	848
ApoI	RAATTY	1 cut(s)	1277
AseI	ATTAAT	1 cut(s)	57
Asp718I	GGTACC	1 cut(s)	467
AsuC2I	CCSGG	2 cut(s)	252, 943
AsuHPI	GGTGA	5 cut(s)	256, 274, 440, 470, 530
AvaI	CYCGRG	1 cut(s)	305
BaeI	ACNNNNGTAYC	2 cut(s)	400, 433
BamHI	GGATCC	1 cut(s)	337
BanI	GGYRCC	1 cut(s)	467
BbsI	GAAGAC	1 cut(s)	1263
Bbv12I	GWGCWC	1 cut(s)	235
BbvCI	CCTCAGC	1 cut(s)	1338
BbvI	GCAGC	1 cut(s)	860
BccI	CCATC	4 cut(s)	152, 349, 470, 695
BceAI	ACGGC	3 cut(s)	88, 302, 672
BcgI	CGANNNNNNTGC	2 cut(s)	1067, 1101
BciT130I	CCWGG	1 cut(s)	399
BciVI	GTATCC	1 cut(s)	734
BcnI	CCSGG	2 cut(s)	252, 943
BcoDI	GTCTC	4 cut(s)	97, 109, 559, 1179
BcuI	ACTAGT	1 cut(s)	19
BfaI	CTAG	3 cut(s)	20, 735, 1037
BfuI	GTATCC	1 cut(s)	734
BisI	GCNGC	1 cut(s)	849
BlpI	GCTNAGC	1 cut(s)	234
BlsI	GCNGC	1 cut(s)	850
Bme1390I	CCNGG	3 cut(s)	252, 399, 943
BmeT110I	CYCGRG	1 cut(s)	305
BmiI	GGNNCC	3 cut(s)	339, 469, 859
BmrFI	CCNGG	3 cut(s)	252, 399, 943
BmsI	GCATC	3 cut(s)	352, 745, 907
BpiI	GAAGAC	1 cut(s)	1263
BplI	GAGNNNNNCTC	2 cut(s)	539, 571
Bpu10I	CCTNAGC	1 cut(s)	1338
Bpu1102I	GCTNAGC	1 cut(s)	234
BpuEI	CTTGAG	1 cut(s)	1322
BpuMI	CCSGG	2 cut(s)	252, 943
BsaHI	GRCGYC	2 cut(s)	75, 315
BsaI	GGTCTC	2 cut(s)	97, 109
BsaJI	CCNNGG	1 cut(s)	398
BsaWI	WCCGGW	2 cut(s)	266, 1063
Bsc4I	CCNNNNNNNGG	3 cut(s)	377, 477, 1070
Bse1I	ACTGG	2 cut(s)	5, 285
Bse3DI	GCAATG	1 cut(s)	1256
BseAI	TCCGGA	1 cut(s)	1063
BseBI	CCWGG	1 cut(s)	399
BseDI	CCNNGG	1 cut(s)	398
BseGI	GGATG	3 cut(s)	367, 1005, 1060
BseLI	CCNNNNNNNGG	3 cut(s)	377, 477, 1070
BseMI	GCAATG	1 cut(s)	1256
BseMII	CTCAG	2 cut(s)	248, 1329
BseNI	ACTGG	2 cut(s)	5, 285
BseXI	GCAGC	1 cut(s)	860
Bsh1285I	CGRYCG	1 cut(s)	94
BshFI	GGCC	2 cut(s)	486, 1343
BshNI	GGYRCC	1 cut(s)	467
BsiEI	CGRYCG	1 cut(s)	94
BsiHKAI	GWGCWC	1 cut(s)	235
BsiHKCI	CYCGRG	1 cut(s)	305
BsiSI	CCGG	5 cut(s)	251, 267, 602, 942, 1064
BslFI	GGGAC	3 cut(s)	267, 683, 1271
BslI	CCNNNNNNNGG	3 cut(s)	377, 477, 1070
BsmAI	GTCTC	4 cut(s)	97, 109, 559, 1179
BsmFI	GGGAC	3 cut(s)	267, 683, 1271
BsnI	GGCC	2 cut(s)	486, 1343
Bso31I	GGTCTC	2 cut(s)	97, 109
BsoBI	CYCGRG	1 cut(s)	305
Bsp1286I	GDGCHC	1 cut(s)	235
Bsp13I	TCCGGA	1 cut(s)	1063
Bsp143I	GATC	4 cut(s)	91, 337, 391, 499
Bsp1720I	GCTNAGC	1 cut(s)	234
BspACI	CCGC	2 cut(s)	382, 1094
BspANI	GGCC	2 cut(s)	486, 1343
BspCNI	CTCAG	2 cut(s)	247, 1330
BspEI	TCCGGA	1 cut(s)	1063
BspLI	GGNNCC	3 cut(s)	339, 469, 859
BspPI	GGATC	3 cut(s)	332, 345, 507
BspT107I	GGYRCC	1 cut(s)	467
BspTNI	GGTCTC	2 cut(s)	97, 109
BsrDI	GCAATG	1 cut(s)	1256
BsrI	ACTGG	2 cut(s)	5, 285
BssECI	CCNNGG	1 cut(s)	398
BssMI	GATC	4 cut(s)	91, 337, 391, 499
BssNI	GRCGYC	2 cut(s)	75, 315
Bst2UI	CCWGG	1 cut(s)	399
Bst4CI	ACNGT	9 cut(s)	125, 258, 372, 428, 467, 530, 791, 1046, 1296
Bst6I	CTCTTC	3 cut(s)	398, 964, 1304
BstACI	GRCGYC	2 cut(s)	75, 315
BstDEI	CTNAG	3 cut(s)	234, 842, 1338
BstF5I	GGATG	3 cut(s)	367, 1005, 1060
BstKTI	GATC	4 cut(s)	94, 340, 394, 502
BstMAI	GTCTC	4 cut(s)	97, 109, 559, 1179
BstMBI	GATC	4 cut(s)	91, 337, 391, 499
BstMCI	CGRYCG	1 cut(s)	94
BstMWI	GCNNNNNNNGC	2 cut(s)	1037, 1235
BstNI	CCWGG	1 cut(s)	399
BstNSI	RCATGY	1 cut(s)	436
BstSCI	CCNGG	3 cut(s)	250, 397, 941
BstV1I	GCAGC	1 cut(s)	860
BstV2I	GAAGAC	1 cut(s)	1263
BstX2I	RGATCY	1 cut(s)	337
BstXI	CCANNNNNNTGG	1 cut(s)	348
BstYI	RGATCY	1 cut(s)	337
BsuI	GTATCC	1 cut(s)	734
BsuRI	GGCC	2 cut(s)	486, 1343
BtgZI	GCGATG	1 cut(s)	327
BtsCI	GGATG	3 cut(s)	367, 1005, 1060
BtsI	GCAGTG	2 cut(s)	49, 1143
BtsIMutI	CAGTG	5 cut(s)	49, 130, 135, 919, 1143
CaiI	CAGNNNCTG	1 cut(s)	854
CseI	GACGC	2 cut(s)	64, 323
Csp6I	GTAC	4 cut(s)	468, 526, 1026, 1056
CviAII	CATG	5 cut(s)	412, 433, 440, 745, 1118
CviQI	GTAC	4 cut(s)	468, 526, 1026, 1056
DdeI	CTNAG	3 cut(s)	234, 842, 1338
DpnI	GATC	4 cut(s)	93, 339, 393, 501
DpnII	GATC	4 cut(s)	91, 337, 391, 499
DraIII	CACNNNGTG	1 cut(s)	125
Eam1104I	CTCTTC	3 cut(s)	398, 964, 1304
EarI	CTCTTC	3 cut(s)	398, 964, 1304
Eco147I	AGGCCT	2 cut(s)	486, 1343
Eco31I	GGTCTC	2 cut(s)	97, 109
Eco57I	CTGAAG	1 cut(s)	1328
Eco88I	CYCGRG	1 cut(s)	305
EcoRI	GAATTC	1 cut(s)	1277
EcoRII	CCWGG	1 cut(s)	397
FaeI	CATG	5 cut(s)	415, 436, 443, 748, 1121
FaqI	GGGAC	3 cut(s)	267, 683, 1271
FatI	CATG	5 cut(s)	411, 432, 439, 744, 1117
FauI	CCCGC	2 cut(s)	375, 1101
FauNDI	CATATG	4 cut(s)	86, 376, 1011, 1258
Fnu4HI	GCNGC	1 cut(s)	849
FokI	GGATG	3 cut(s)	374, 992, 1047
Fsp4HI	GCNGC	1 cut(s)	849
FspBI	CTAG	3 cut(s)	20, 735, 1037
GluI	GCNGC	1 cut(s)	849
HaeIII	GGCC	2 cut(s)	486, 1343
HapII	CCGG	5 cut(s)	251, 267, 602, 942, 1064
HgaI	GACGC	2 cut(s)	64, 323
Hin1I	GRCGYC	2 cut(s)	75, 315
Hin1II	CATG	5 cut(s)	415, 436, 443, 748, 1121
HincII	GTYRAC	2 cut(s)	33, 1264
HindII	GTYRAC	2 cut(s)	33, 1264
HinfI	GANTC	8 cut(s)	49, 674, 704, 731, 1067, 1102, 1172, 1241
HpaII	CCGG	5 cut(s)	251, 267, 602, 942, 1064
HphI	GGTGA	5 cut(s)	256, 274, 440, 470, 530
Hpy166II	GTNNAC	3 cut(s)	33, 838, 1264
Hpy188I	TCNGA	6 cut(s)	54, 80, 102, 712, 901, 1276
Hpy188III	TCNNGA	6 cut(s)	305, 307, 592, 671, 823, 1064
Hpy8I	GTNNAC	3 cut(s)	33, 838, 1264
Hpy99I	CGWCG	1 cut(s)	80
HpyCH4III	ACNGT	9 cut(s)	125, 258, 372, 428, 467, 530, 791, 1046, 1296
HpyCH4IV	ACGT	1 cut(s)	167
HpyCH4V	TGCA	2 cut(s)	803, 1031
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1037, 1235
HpyF3I	CTNAG	3 cut(s)	234, 842, 1338
HpySE526I	ACGT	1 cut(s)	167
Hsp92I	GRCGYC	2 cut(s)	75, 315
Hsp92II	CATG	5 cut(s)	415, 436, 443, 748, 1121
Kpn2I	TCCGGA	1 cut(s)	1063
KpnI	GGTACC	1 cut(s)	471
Kzo9I	GATC	4 cut(s)	91, 337, 391, 499
LmnI	GCTCC	1 cut(s)	604
Lsp1109I	GCAGC	1 cut(s)	860
LweI	GCATC	3 cut(s)	352, 745, 907
MaeI	CTAG	3 cut(s)	20, 735, 1037
MaeII	ACGT	1 cut(s)	167
MaeIII	GTNAC	8 cut(s)	68, 355, 428, 451, 652, 1103, 1113, 1322
MalI	GATC	4 cut(s)	93, 339, 393, 501
MboI	GATC	4 cut(s)	91, 337, 391, 499
MboII	GAAGA	5 cut(s)	415, 699, 981, 1263, 1321
MflI	RGATCY	1 cut(s)	337
MhlI	GDGCHC	1 cut(s)	235
MluCI	AATT	3 cut(s)	508, 634, 1277
MlyI	GAGTC	2 cut(s)	1111, 1181
MmeI	TCCRAC	4 cut(s)	58, 80, 1026, 1108
MnlI	CCTC	8 cut(s)	258, 290, 340, 546, 871, 901, 965, 1333
MroI	TCCGGA	1 cut(s)	1063
MseI	TTAA	6 cut(s)	57, 507, 768, 984, 1017, 1218
MslI	CAYNNNNRTG	1 cut(s)	1010
MspI	CCGG	5 cut(s)	251, 267, 602, 942, 1064
MspR9I	CCNGG	3 cut(s)	252, 399, 943
MvaI	CCWGG	1 cut(s)	399
MwoI	GCNNNNNNNGC	2 cut(s)	1037, 1235
NciI	CCSGG	2 cut(s)	252, 943
NdeI	CATATG	4 cut(s)	86, 376, 1011, 1258
NdeII	GATC	4 cut(s)	91, 337, 391, 499
NlaIII	CATG	5 cut(s)	415, 436, 443, 748, 1121
NlaIV	GGNNCC	3 cut(s)	339, 469, 859
NmeAIII	GCCGAG	1 cut(s)	1205
NmuCI	GTSAC	3 cut(s)	355, 428, 1103
NspI	RCATGY	1 cut(s)	436
PaeR7I	CTCGAG	1 cut(s)	305
PceI	AGGCCT	2 cut(s)	486, 1343
PfeI	GAWTC	6 cut(s)	49, 674, 704, 731, 1067, 1241
PflFI	GACNNNGTC	1 cut(s)	317
PfoI	TCCNGGA	2 cut(s)	250, 941
PkrI	GCNGC	1 cut(s)	850
Ple19I	CGATCG	1 cut(s)	94
PleI	GAGTC	2 cut(s)	1110, 1180
PpsI	GAGTC	2 cut(s)	1110, 1180
PshBI	ATTAAT	1 cut(s)	57
Psp1406I	AACGTT	1 cut(s)	167
Psp6I	CCWGG	1 cut(s)	397
PspGI	CCWGG	1 cut(s)	397
PspN4I	GGNNCC	3 cut(s)	339, 469, 859
PstNI	CAGNNNCTG	1 cut(s)	854
PsuI	RGATCY	1 cut(s)	337
PsyI	GACNNNGTC	1 cut(s)	317
PvuI	CGATCG	1 cut(s)	94
RsaI	GTAC	4 cut(s)	469, 527, 1027, 1057
RsaNI	GTAC	4 cut(s)	468, 526, 1026, 1056
RseI	CAYNNNNRTG	1 cut(s)	1010
SaqAI	TTAA	6 cut(s)	57, 507, 768, 984, 1017, 1218
SatI	GCNGC	1 cut(s)	849
Sau3AI	GATC	4 cut(s)	91, 337, 391, 499
SchI	GAGTC	2 cut(s)	1111, 1181
ScrFI	CCNGG	3 cut(s)	252, 399, 943
SduI	GDGCHC	1 cut(s)	235
SfaNI	GCATC	3 cut(s)	352, 745, 907
Sfr274I	CTCGAG	1 cut(s)	305
SlaI	CTCGAG	1 cut(s)	305
SmiMI	CAYNNNNRTG	1 cut(s)	1010
SmlI	CTYRAG	2 cut(s)	305, 1301
SmoI	CTYRAG	2 cut(s)	305, 1301
SpeI	ACTAGT	1 cut(s)	19
Sse9I	AATT	3 cut(s)	508, 634, 1277
SseBI	AGGCCT	2 cut(s)	486, 1343
SsiI	CCGC	2 cut(s)	382, 1094
SspMI	CTAG	3 cut(s)	20, 735, 1037
StuI	AGGCCT	2 cut(s)	486, 1343
StyD4I	CCNGG	3 cut(s)	250, 397, 941
TaaI	ACNGT	9 cut(s)	125, 258, 372, 428, 467, 530, 791, 1046, 1296
TaiI	ACGT	1 cut(s)	170
TaqI	TCGA	6 cut(s)	306, 546, 1077, 1187, 1199, 1214
TaqII	GACCGA	1 cut(s)	121
TasI	AATT	3 cut(s)	508, 634, 1277
TatI	WGTACW	1 cut(s)	525
TfiI	GAWTC	6 cut(s)	49, 674, 704, 731, 1067, 1241
Tru1I	TTAA	6 cut(s)	57, 507, 768, 984, 1017, 1218
Tru9I	TTAA	6 cut(s)	57, 507, 768, 984, 1017, 1218
TscAI	CASTG	5 cut(s)	49, 130, 142, 919, 1150
TseFI	GTSAC	3 cut(s)	355, 428, 1103
TseI	GCWGC	1 cut(s)	848
Tsp45I	GTSAC	3 cut(s)	355, 428, 1103
TspDTI	ATGAA	3 cut(s)	635, 798, 1095
TspGWI	ACGGA	1 cut(s)	374
TspRI	CASTG	5 cut(s)	49, 130, 142, 919, 1150
Tth111I	GACNNNGTC	1 cut(s)	317
VspI	ATTAAT	1 cut(s)	57
XapI	RAATTY	1 cut(s)	1277
XceI	RCATGY	1 cut(s)	436
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1009
XhoI	CTCGAG	1 cut(s)	305
XspI	CTAG	3 cut(s)	20, 735, 1037

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.