pycom16g13710

Belongs to the glycosyl hydrolase 28 family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
Physical Location & Seq
Reverse (-)
9786890 .. 9789235
2346 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g13710.3

Sequence Viewer

Length: 1434 bp
ATGAAGATGCTATTGTATTTCTTTCAAAATTTTCTGAGAAATCAGTGGCTTTTTCTAAATTTCCACTGTTTTCAGGCGGTGTTTTTCTTGCTGCTGGCCGTGAGTAATGCCGTCAAACTTAACGGAGAAGACGATGAGACACCGTGCGATTCTAAACTGACATTAAAGCAAAGGCCACACAGTGTGTCCATTTCGGAATTTGGTGCTGTCGGAGATGGCAAAACATTGAACACTCATGCCTTCCAGAATGCCATCTTCTACCTCAAGTCTTTCGCCGATAAAGGCGGTGCTCAGCTCTATGTGCCACCGGGGAGGTGGCTTACCGGAAGCTTCAACCTCACCAGCCACCTCACGCTGTTTTTGGAAAAGGGTGCTGTCATTCTTGGATCTCAGGATCCGTCTCATTGGGAGATTGTTGAGCCTTTACCCTCGTATGGTCGAGGGATTGAACTCCCCGGGAGGAGATATGGTAGCTTGATAAATGGATATATGTTACAAGATGTGGTCATAACTGGTGATAATGGAACCATCGATGGCCAGGGATCGATCTGGTGGGATTGGTTTAGCTCCCAATCTCTCAACTACAGCCGCCCGCATCTTGTGGAATTCGTTATGTCTAAATACGTGGTGGTTTCGAACCTCACATTCATGGATGCTCCCGCTTACAACATCCATCCTGTCTATTGCAGTAATGTACATGTTCACAACATCTCTGTATCTGCTCCTCCAGACTCCCCTCATACTGTCGGCATAGTCCCAGATTCTTCTGATATTGTGTGCATAGAAGATTGCAGCATTGGCATGGGGTATGATGCCATTGCCCTCAAGAGTGGTTGGGACGAGTACGGGATTGCCTATGGAAGACCGACCACAAATGTACACATCAGGCGTGTCACCTTACAATCAGCTACTGGTTCTTCTCTTGCCTTTGGTAGTGAGATGTCCGGTGGCATTTCTAACGTACTTGTTGAGAAGGTCCGCCTCAACAACTCATTTAGCGGCATTCAGTTTCGAACAACGAAGGGTAGAGGCGGTTACATCAAAGACGTCATCATATCAGATGTCGAAATGGAAAACATCTACATGGCATTTGGTGCCTCTGGCCAGTTTGGTTCCCATCCCGACGACAAATATGATCCTAATGCTCTCCCTGTTTTGGATCATATCACATTGCAAGATGTGGTTGGCACAAACATCACAATTGCCGGATGCTTCACCGGGATCAAAGAATCGCCATTCACTTCTTTCTTTCTATCCAACATCTCATTGTCATTGAATTCTGGATCTCCCACCACTTGGGATTGTTCATATGTTTCCGGCTCTTCTGAGTCTGTCTTCCCAGAACCATGTTCCGACCTCAATACCTCGTATTCAAATCCTTCATCCGCCCGCTTTTCGCTACTCACCTTGAATGGAAAAGCCGCGGTCTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

478

Amino Acids

52.21

Weight (kDa)

5.41

Isoelectric Point (pI)

43.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1432
AatII GACGTC 1 cut(s) 1050
AccB1I GGYRCC 1 cut(s) 1094
AccB7I CCANNNNNTGG 1 cut(s) 1296
AccII CGCG 1 cut(s) 1424
AclWI GGATC 8 cut(s) 389, 394, 402, 550, 1130, 1167, 1229, 1291
AcoI YGGCCR 3 cut(s) 96, 535, 1102
AcsI RAATTY 5 cut(s) 28, 58, 197, 605, 1276
AcyI GRCGYC 1 cut(s) 1047
AdeI CACNNNGTG 2 cut(s) 182, 184
AfaI GTAC 4 cut(s) 696, 845, 879, 963
AfiI CCNNNNNNNGG 3 cut(s) 434, 1156, 1296
AflIII ACRYGT 1 cut(s) 697
AgsI TTSAA 7 cut(s) 26, 229, 334, 449, 1276, 1374, 1411
AjnI CCWGG 1 cut(s) 537
AluBI AGCT 5 cut(s) 295, 330, 474, 567, 908
AluI AGCT 5 cut(s) 295, 330, 474, 567, 908
Alw21I GWGCWC 1 cut(s) 292
Alw26I GTCTC 2 cut(s) 131, 405
AlwI GGATC 8 cut(s) 389, 394, 402, 550, 1130, 1167, 1229, 1291
AlwNI CAGNNNCTG 1 cut(s) 911
Ama87I CYCGRG 1 cut(s) 455
AoxI GGCC 4 cut(s) 96, 173, 535, 1102
ApeKI GCWGC 2 cut(s) 91, 792
ApoI RAATTY 5 cut(s) 28, 58, 197, 605, 1276
AspS9I GGNCC 1 cut(s) 976
AsuC2I CCSGG 4 cut(s) 309, 456, 457, 1219
AsuHPI GGTGA 5 cut(s) 331, 527, 886, 1207, 1396
AsuII TTCGAA 2 cut(s) 635, 1012
AvaI CYCGRG 1 cut(s) 455
AvaII GGWCC 1 cut(s) 976
BalI TGGCCA 2 cut(s) 537, 1104
BamHI GGATCC 1 cut(s) 394
BanI GGYRCC 1 cut(s) 1094
BbsI GAAGAC 3 cut(s) 135, 868, 1327
Bbv12I GWGCWC 1 cut(s) 292
BbvI GCAGC 2 cut(s) 78, 804
BccI CCATC 6 cut(s) 209, 260, 527, 536, 681, 1125
BceAI ACGGC 2 cut(s) 83, 95
BciT130I CCWGG 1 cut(s) 539
BcnI CCSGG 4 cut(s) 309, 456, 457, 1219
BcoDI GTCTC 2 cut(s) 131, 405
BfmI CTRYAG 1 cut(s) 583
BisI GCNGC 5 cut(s) 92, 589, 793, 1000, 1422
BlpI GCTNAGC 1 cut(s) 291
BlsI GCNGC 5 cut(s) 93, 590, 794, 1001, 1423
Bme1390I CCNGG 5 cut(s) 309, 456, 457, 539, 1219
Bme18I GGWCC 1 cut(s) 976
BmeT110I CYCGRG 1 cut(s) 455
BmgT120I GGNCC 1 cut(s) 976
BmiI GGNNCC 4 cut(s) 396, 526, 1096, 1114
BmrFI CCNGG 5 cut(s) 309, 456, 457, 539, 1219
BmsI GCATC 4 cut(s) 604, 643, 802, 1199
BpiI GAAGAC 3 cut(s) 135, 868, 1327
BpmI CTGGAG 1 cut(s) 711
Bpu1102I GCTNAGC 1 cut(s) 291
Bpu14I TTCGAA 2 cut(s) 635, 1012
BpuEI CTTGAG 2 cut(s) 248, 809
BpuMI CCSGG 4 cut(s) 309, 456, 457, 1219
Bsa29I ATCGAT 2 cut(s) 531, 545
BsaAI YACGTR 1 cut(s) 625
BsaHI GRCGYC 1 cut(s) 1047
BsaJI CCNNGG 5 cut(s) 308, 454, 455, 538, 1422
BsaWI WCCGGW 2 cut(s) 323, 944
BsaXI ACNNNNNCTCC 2 cut(s) 454, 484
Bsc4I CCNNNNNNNGG 3 cut(s) 434, 1156, 1296
Bse1I ACTGG 3 cut(s) 517, 916, 1105
Bse3DI GCAATG 2 cut(s) 816, 1169
BseBI CCWGG 1 cut(s) 539
BseCI ATCGAT 2 cut(s) 531, 545
BseDI CCNNGG 5 cut(s) 308, 454, 455, 538, 1422
BseGI GGATG 6 cut(s) 658, 669, 673, 1117, 1214, 1382
BseLI CCNNNNNNNGG 3 cut(s) 434, 1156, 1296
BseMI GCAATG 2 cut(s) 816, 1169
BseMII CTCAG 4 cut(s) 26, 305, 404, 1317
BseNI ACTGG 3 cut(s) 517, 916, 1105
BseRI GAGGAG 2 cut(s) 475, 714
BseXI GCAGC 2 cut(s) 78, 804
Bsh1236I CGCG 1 cut(s) 1424
BshFI GGCC 4 cut(s) 98, 175, 537, 1104
BshNI GGYRCC 1 cut(s) 1094
BshVI ATCGAT 2 cut(s) 531, 545
BsiHKAI GWGCWC 1 cut(s) 292
BsiHKCI CYCGRG 1 cut(s) 455
BsiSI CCGG 7 cut(s) 308, 324, 456, 945, 1206, 1218, 1317
BslFI GGGAC 2 cut(s) 740, 851
BslI CCNNNNNNNGG 3 cut(s) 434, 1156, 1296
BsmAI GTCTC 2 cut(s) 131, 405
BsmBI CGTCTC 1 cut(s) 405
BsmFI GGGAC 2 cut(s) 740, 851
BsmI GAATGC 2 cut(s) 253, 1002
BsnI GGCC 4 cut(s) 98, 175, 537, 1104
BsoBI CYCGRG 1 cut(s) 455
Bsp119I TTCGAA 2 cut(s) 635, 1012
Bsp1286I GDGCHC 1 cut(s) 292
Bsp1407I TGTACA 2 cut(s) 694, 877
Bsp143I GATC 8 cut(s) 386, 394, 542, 546, 1135, 1159, 1221, 1283
Bsp1720I GCTNAGC 1 cut(s) 291
BspANI GGCC 4 cut(s) 98, 175, 537, 1104
BspCNI CTCAG 4 cut(s) 27, 304, 403, 1318
BspDI ATCGAT 2 cut(s) 531, 545
BspFNI CGCG 1 cut(s) 1424
BspLI GGNNCC 4 cut(s) 396, 526, 1096, 1114
BspPI GGATC 8 cut(s) 389, 394, 402, 550, 1130, 1167, 1229, 1291
BspQI GCTCTTC 1 cut(s) 1327
BspT104I TTCGAA 2 cut(s) 635, 1012
BspT107I GGYRCC 1 cut(s) 1094
BsrDI GCAATG 2 cut(s) 816, 1169
BsrGI TGTACA 2 cut(s) 694, 877
BsrI ACTGG 3 cut(s) 517, 916, 1105
BssECI CCNNGG 5 cut(s) 308, 454, 455, 538, 1422
BssMI GATC 8 cut(s) 386, 394, 542, 546, 1135, 1159, 1221, 1283
BssNI GRCGYC 1 cut(s) 1047
Bst2UI CCWGG 1 cut(s) 539
Bst4CI ACNGT 4 cut(s) 68, 144, 182, 745
Bst6I CTCTTC 1 cut(s) 1327
BstACI GRCGYC 1 cut(s) 1047
BstAPI GCANNNNNTGC 1 cut(s) 1094
BstAUI TGTACA 2 cut(s) 694, 877
BstBAI YACGTR 1 cut(s) 625
BstBI TTCGAA 2 cut(s) 635, 1012
BstC8I GCNNGC 3 cut(s) 96, 593, 1390
BstDEI CTNAG 4 cut(s) 35, 291, 390, 1326
BstDSI CCRYGG 1 cut(s) 1422
BstF5I GGATG 6 cut(s) 658, 669, 673, 1117, 1214, 1382
BstFNI CGCG 1 cut(s) 1424
BstKTI GATC 8 cut(s) 389, 397, 545, 549, 1138, 1162, 1224, 1286
BstMAI GTCTC 2 cut(s) 131, 405
BstMBI GATC 8 cut(s) 386, 394, 542, 546, 1135, 1159, 1221, 1283
BstMWI GCNNNNNNNGC 3 cut(s) 301, 798, 1094
BstNI CCWGG 1 cut(s) 539
BstNSI RCATGY 1 cut(s) 701
BstSCI CCNGG 5 cut(s) 307, 454, 455, 537, 1217
BstSFI CTRYAG 1 cut(s) 583
BstUI CGCG 1 cut(s) 1424
BstV1I GCAGC 2 cut(s) 78, 804
BstV2I GAAGAC 3 cut(s) 135, 868, 1327
BstX2I RGATCY 3 cut(s) 386, 394, 1283
BstYI RGATCY 3 cut(s) 386, 394, 1283
Bsu15I ATCGAT 2 cut(s) 531, 545
BsuRI GGCC 4 cut(s) 98, 175, 537, 1104
BsuTUI ATCGAT 2 cut(s) 531, 545
BtgI CCRYGG 1 cut(s) 1422
BtsCI GGATG 6 cut(s) 658, 669, 673, 1117, 1214, 1382
BtsIMutI CAGTG 3 cut(s) 50, 64, 187
Cac8I GCNNGC 3 cut(s) 96, 593, 1390
CaiI CAGNNNCTG 1 cut(s) 911
Cfr13I GGNCC 1 cut(s) 976
Cfr42I CCGCGG 1 cut(s) 1425
Cfr9I CCCGGG 1 cut(s) 455
ClaI ATCGAT 2 cut(s) 531, 545
Csp6I GTAC 4 cut(s) 695, 844, 878, 962
CviAII CATG 6 cut(s) 236, 649, 698, 802, 1084, 1347
CviQI GTAC 4 cut(s) 695, 844, 878, 962
DdeI CTNAG 4 cut(s) 35, 291, 390, 1326
DpnI GATC 8 cut(s) 388, 396, 544, 548, 1137, 1161, 1223, 1285
DpnII GATC 8 cut(s) 386, 394, 542, 546, 1135, 1159, 1221, 1283
DraIII CACNNNGTG 2 cut(s) 182, 184
EaeI YGGCCR 3 cut(s) 96, 535, 1102
Eam1104I CTCTTC 1 cut(s) 1327
EarI CTCTTC 1 cut(s) 1327
EciI GGCGGA 2 cut(s) 968, 1375
Eco47I GGWCC 1 cut(s) 976
Eco88I CYCGRG 1 cut(s) 455
EcoRI GAATTC 2 cut(s) 605, 1276
EcoRII CCWGG 1 cut(s) 537
Esp3I CGTCTC 1 cut(s) 405
FaeI CATG 6 cut(s) 239, 652, 701, 805, 1087, 1350
FaqI GGGAC 2 cut(s) 740, 851
FatI CATG 6 cut(s) 235, 648, 697, 801, 1083, 1346
FauI CCCGC 3 cut(s) 600, 667, 1397
FauNDI CATATG 1 cut(s) 1309
Fnu4HI GCNGC 5 cut(s) 92, 589, 793, 1000, 1422
FokI GGATG 6 cut(s) 656, 660, 665, 1104, 1221, 1369
Fsp4HI GCNGC 5 cut(s) 92, 589, 793, 1000, 1422
GluI GCNGC 5 cut(s) 92, 589, 793, 1000, 1422
GsuI CTGGAG 1 cut(s) 711
HaeIII GGCC 4 cut(s) 98, 175, 537, 1104
HapII CCGG 7 cut(s) 308, 324, 456, 945, 1206, 1218, 1317
Hin1I GRCGYC 1 cut(s) 1047
Hin1II CATG 6 cut(s) 239, 652, 701, 805, 1087, 1350
HindIII AAGCTT 1 cut(s) 328
HinfI GANTC 5 cut(s) 149, 731, 761, 1229, 1328
HpaII CCGG 7 cut(s) 308, 324, 456, 945, 1206, 1218, 1317
HphI GGTGA 5 cut(s) 331, 527, 886, 1207, 1396
Hpy166II GTNNAC 2 cut(s) 703, 880
Hpy188I TCNGA 7 cut(s) 36, 196, 212, 769, 1060, 1327, 1354
Hpy188III TCNNGA 6 cut(s) 244, 392, 728, 826, 1121, 1281
Hpy8I GTNNAC 2 cut(s) 703, 880
Hpy99I CGWCG 1 cut(s) 1127
HpyAV CCTTC 4 cut(s) 250, 967, 1015, 1389
HpyCH4III ACNGT 4 cut(s) 68, 144, 182, 745
HpyCH4IV ACGT 3 cut(s) 624, 960, 1047
HpyCH4V TGCA 4 cut(s) 687, 780, 792, 1174
HpyF10VI GCNNNNNNNGC 3 cut(s) 301, 798, 1094
HpyF3I CTNAG 4 cut(s) 35, 291, 390, 1326
HpySE526I ACGT 3 cut(s) 624, 960, 1047
Hsp92I GRCGYC 1 cut(s) 1047
Hsp92II CATG 6 cut(s) 239, 652, 701, 805, 1087, 1350
KspI CCGCGG 1 cut(s) 1425
Kzo9I GATC 8 cut(s) 386, 394, 542, 546, 1135, 1159, 1221, 1283
LguI GCTCTTC 1 cut(s) 1327
LmnI GCTCC 3 cut(s) 572, 661, 727
Lsp1109I GCAGC 2 cut(s) 78, 804
LweI GCATC 4 cut(s) 604, 643, 802, 1199
MaeII ACGT 3 cut(s) 624, 960, 1047
MaeIII GTNAC 3 cut(s) 492, 892, 1034
MalI GATC 8 cut(s) 388, 396, 544, 548, 1137, 1161, 1223, 1285
MboI GATC 8 cut(s) 386, 394, 542, 546, 1135, 1159, 1221, 1283
MboII GAAGA 9 cut(s) 16, 140, 247, 756, 797, 873, 909, 1314, 1327
MfeI CAATTG 1 cut(s) 1200
MflI RGATCY 3 cut(s) 386, 394, 1283
MhlI GDGCHC 1 cut(s) 292
MlsI TGGCCA 2 cut(s) 537, 1104
MluCI AATT 6 cut(s) 28, 58, 197, 605, 1200, 1276
MluNI TGGCCA 2 cut(s) 537, 1104
MlyI GAGTC 2 cut(s) 725, 1337
MmeI TCCRAC 3 cut(s) 190, 1281, 1377
Mox20I TGGCCA 2 cut(s) 537, 1104
MscI TGGCCA 2 cut(s) 537, 1104
MseI TTAA 2 cut(s) 120, 164
MslI CAYNNNNRTG 3 cut(s) 647, 800, 1082
Msp20I TGGCCA 2 cut(s) 537, 1104
MspA1I CMGCKG 1 cut(s) 1424
MspI CCGG 7 cut(s) 308, 324, 456, 945, 1206, 1218, 1317
MspR9I CCNGG 5 cut(s) 309, 456, 457, 539, 1219
MunI CAATTG 1 cut(s) 1200
Mva1269I GAATGC 2 cut(s) 253, 1002
MvaI CCWGG 1 cut(s) 539
MvnI CGCG 1 cut(s) 1424
MwoI GCNNNNNNNGC 3 cut(s) 301, 798, 1094
NciI CCSGG 4 cut(s) 309, 456, 457, 1219
NdeI CATATG 1 cut(s) 1309
NdeII GATC 8 cut(s) 386, 394, 542, 546, 1135, 1159, 1221, 1283
NlaIII CATG 6 cut(s) 239, 652, 701, 805, 1087, 1350
NlaIV GGNNCC 4 cut(s) 396, 526, 1096, 1114
NmuCI GTSAC 1 cut(s) 892
NspI RCATGY 1 cut(s) 701
NspV TTCGAA 2 cut(s) 635, 1012
PciI ACATGT 1 cut(s) 697
PciSI GCTCTTC 1 cut(s) 1327
PcsI WCGNNNNNNNCGW 1 cut(s) 129
PctI GAATGC 2 cut(s) 253, 1002
PfeI GAWTC 3 cut(s) 149, 761, 1229
PflMI CCANNNNNTGG 1 cut(s) 1296
PkrI GCNGC 5 cut(s) 93, 590, 794, 1001, 1423
PleI GAGTC 2 cut(s) 725, 1336
PpsI GAGTC 2 cut(s) 725, 1336
Ppu21I YACGTR 1 cut(s) 625
PscI ACATGT 1 cut(s) 697
PsiI TTATAA 1 cut(s) 1432
Psp6I CCWGG 1 cut(s) 537
PspGI CCWGG 1 cut(s) 537
PspN4I GGNNCC 4 cut(s) 396, 526, 1096, 1114
PspPI GGNCC 1 cut(s) 976
PstNI CAGNNNCTG 1 cut(s) 911
PsuI RGATCY 3 cut(s) 386, 394, 1283
RsaI GTAC 4 cut(s) 696, 845, 879, 963
RsaNI GTAC 4 cut(s) 695, 844, 878, 962
RseI CAYNNNNRTG 3 cut(s) 647, 800, 1082
SacII CCGCGG 1 cut(s) 1425
SapI GCTCTTC 1 cut(s) 1327
SaqAI TTAA 2 cut(s) 120, 164
SatI GCNGC 5 cut(s) 92, 589, 793, 1000, 1422
Sau3AI GATC 8 cut(s) 386, 394, 542, 546, 1135, 1159, 1221, 1283
Sau96I GGNCC 1 cut(s) 976
SchI GAGTC 2 cut(s) 725, 1337
ScrFI CCNGG 5 cut(s) 309, 456, 457, 539, 1219
SduI GDGCHC 1 cut(s) 292
SfaNI GCATC 4 cut(s) 604, 643, 802, 1199
SfcI CTRYAG 1 cut(s) 583
Sfr303I CCGCGG 1 cut(s) 1425
SfuI TTCGAA 2 cut(s) 635, 1012
SgrBI CCGCGG 1 cut(s) 1425
SinI GGWCC 1 cut(s) 976
SmaI CCCGGG 1 cut(s) 457
SmiMI CAYNNNNRTG 3 cut(s) 647, 800, 1082
SmlI CTYRAG 2 cut(s) 263, 824
SmoI CTYRAG 2 cut(s) 263, 824
Sse9I AATT 6 cut(s) 28, 58, 197, 605, 1200, 1276
StyD4I CCNGG 5 cut(s) 307, 454, 455, 537, 1217
TaaI ACNGT 4 cut(s) 68, 144, 182, 745
TaiI ACGT 3 cut(s) 627, 963, 1050
TaqI TCGA 6 cut(s) 439, 531, 545, 635, 1012, 1065
TaqII GACCGA 1 cut(s) 880
TasI AATT 6 cut(s) 28, 58, 197, 605, 1200, 1276
TatI WGTACW 2 cut(s) 694, 877
TauI GCSGC 3 cut(s) 591, 1002, 1424
TfiI GAWTC 3 cut(s) 149, 761, 1229
Tru1I TTAA 2 cut(s) 120, 164
Tru9I TTAA 2 cut(s) 120, 164
TscAI CASTG 3 cut(s) 50, 71, 187
TseFI GTSAC 1 cut(s) 892
TseI GCWGC 2 cut(s) 91, 792
Tsp45I GTSAC 1 cut(s) 892
TspDTI ATGAA 4 cut(s) 17, 637, 1296, 1371
TspGWI ACGGA 2 cut(s) 138, 387
TspMI CCCGGG 1 cut(s) 455
TspRI CASTG 3 cut(s) 50, 71, 187
Van91I CCANNNNNTGG 1 cut(s) 1296
VpaK11BI GGWCC 1 cut(s) 976
XapI RAATTY 5 cut(s) 28, 58, 197, 605, 1276
XceI RCATGY 1 cut(s) 701
XcmI CCANNNNNNNNNTGG 1 cut(s) 312
XmaI CCCGGG 1 cut(s) 455
ZraI GACGTC 1 cut(s) 1048
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.