Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003369.1

Orthogroup ID

OG0008733

Physical Location & Seq

Genomic Coordinates Reverse (-)

40447 .. 43101

Gene Structure 2655 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003369.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1368 bp

atgaagatgctagtggtattgctcttgctgctgagtttgggcgatgctattggtggagaagacgaggagaggccttgtgattctaaactgcaattaaaaccaaggccgcatagtgtttccattttggagtttggtgctgttggagatggcaagacattgaacactcttgctttccagaatgccattttctatctcaagtcttttgctgacaagggcggtgcacagctttacgtgccgcccggaagatggcttaccggaagtttcaaccttacgagccatctcacactgtttttggaaaagggtgctgtcattcttggatctcaggatccttctcattggggtattcttgaacccttgccctcgtacggtcgagggattgaactcccaggagggagatattgtagcttgataaatggatatatgttacaggatgtggtcataacaggtgataatggaaccatcaacggtcaaggatcagtgtggtgggattggtttaactctcatactttaaaccatagccgtcctcatcttatagagttagtttcgtctaaagatgttgttgtttcaaacctcacatttgtgaattctcctgcatacaacattcatccagtctattgcagtaatgtacatattcacaacatctcagtctctgctcccccggagtccccttatacagtcggtatagtcccagattcttctgacaatgtgtgcatacaagattgcagcattggcatgggttatgatgccattgtcctcaagagtggttgggacgagtatggcattgcctatggaagaccaaccacaaatgtacacatcagacgggtccagctacaatcgtcttctggttcttctcttgcctttggtagtgagatgtccggtggcatttctaatgtgcttgtggagcaggtccacctatacaactcacttagtggcattcagtttagaacaacaaagggtagaggtggttatatcaaagatatcgtaatttcagatgtcaaaatggaaaacatcgacgtggcatttggtgcgtctggtcagtttggttcccatccggatgacaacttcgatcctaatgcccttccagtattggatcacatcaacttacaggatgtgattggtaccaacatcactattgctggaaaattctctgggatcaaggaatcccccttcacttccttttgtctgtccaatatctccttgtcaatcaattctggttcttctaccaattcttgggtatgttcaaatgtttctggctcttctgagtctgtcttccccgaaccatgttctgcccttaagtcatcgtattcaaattcttcctcagcctgcttttcaatacagaccttgaatggaacagccgtggcattatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_28

Protein Analysis

455

Amino Acids

48.81

Weight (kDa)

5.39

Isoelectric Point (pI)

47.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008733)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06770 AT3G06770 AT3G06770 AT3G06770 AT3G06770 AT5G49215 AT5G49215
fragaria_vesca	FvH4_4g18930
malus_domestica	MD13G1162000.v1.1 MD16G1161800.v1.1
prunus_persica	Prupe.1G129300_v2.0.a1
pyrus_communis	pycom13g13810 pycom16g13710
rosa_chinensis	RchiOBHm_Chr4g0423821
rosa_laevigata	RLG00000007529
rosa_multiflora	Rmu_sc0003369.1_g000016
rosa_roxburghii	Rroxscaffold_5G00365940
rosa_rugosa	Rorug04G0191000
rosa_samantha	Rh4AG250400 Rh4BG255700 Rh4CG263800 Rh4DG250200
rosa_wichuraiana	Rw4G021450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	895
Acc65I	GGTACC	1 cut(s)	1118
AccB1I	GGYRCC	1 cut(s)	1118
AccB7I	CCANNNNNTGG	1 cut(s)	1230
AccIII	TCCGGA	1 cut(s)	1051
AciI	CCGC	3 cut(s)	107, 216, 236
AclWI	GGATC	7 cut(s)	320, 325, 333, 481, 1061, 1098, 1160
AcsI	RAATTY	3 cut(s)	583, 1142, 1309
AdeI	CACNNNGTG	1 cut(s)	929
AfaI	GTAC	4 cut(s)	365, 627, 810, 1120
AfiI	CCNNNNNNNGG	3 cut(s)	246, 365, 1230
AflII	CTTAAG	1 cut(s)	1292
AgsI	TTSAA	9 cut(s)	160, 265, 350, 380, 567, 1242, 1308, 1332, 1345
AjiI	CACGTC	1 cut(s)	1015
AjnI	CCWGG	1 cut(s)	385
AleI	CACNNNNGTG	1 cut(s)	578
AluBI	AGCT	3 cut(s)	226, 405, 829
AluI	AGCT	3 cut(s)	226, 405, 829
Alw21I	GWGCWC	1 cut(s)	223
Alw26I	GTCTC	1 cut(s)	652
Alw44I	GTGCAC	1 cut(s)	219
AlwI	GGATC	7 cut(s)	320, 325, 333, 481, 1061, 1098, 1160
AlwNI	CAGNNNCTG	1 cut(s)	650
Aor13HI	TCCGGA	1 cut(s)	1051
AoxI	GGCC	2 cut(s)	71, 104
ApaLI	GTGCAC	1 cut(s)	219
ApeKI	GCWGC	2 cut(s)	28, 723
ApoI	RAATTY	3 cut(s)	583, 1142, 1309
ArsI	GACNNNNNNTTYG	2 cut(s)	1004, 1036
Asp718I	GGTACC	1 cut(s)	1118
AspS9I	GGNCC	2 cut(s)	823, 907
AsuC2I	CCSGG	2 cut(s)	240, 659
AsuHPI	GGTGA	1 cut(s)	458
AvaII	GGWCC	2 cut(s)	823, 907
BaeGI	GKGCMC	1 cut(s)	223
BamHI	GGATCC	1 cut(s)	325
BanI	GGYRCC	1 cut(s)	1118
BarI	GAAGNNNNNNTAC	2 cut(s)	235, 267
BbsI	GAAGAC	4 cut(s)	66, 799, 831, 1261
Bbv12I	GWGCWC	1 cut(s)	223
BbvCI	CCTCAGC	1 cut(s)	1318
BbvI	GCAGC	2 cut(s)	15, 735
BccI	CCATC	5 cut(s)	140, 240, 285, 467, 1056
BceAI	ACGGC	2 cut(s)	504, 1340
BcgI	CGANNNNNNTGC	2 cut(s)	1055, 1089
BciT130I	CCWGG	1 cut(s)	387
BcnI	CCSGG	2 cut(s)	240, 659
BcoDI	GTCTC	1 cut(s)	652
BfaI	CTAG	1 cut(s)	11
BfrI	CTTAAG	1 cut(s)	1292
BfuAI	ACCTGC	1 cut(s)	895
BisI	GCNGC	4 cut(s)	29, 107, 236, 724
BlsI	GCNGC	4 cut(s)	30, 108, 237, 725
Bme1390I	CCNGG	3 cut(s)	240, 387, 659
Bme18I	GGWCC	2 cut(s)	823, 907
BmgBI	CACGTC	1 cut(s)	1015
BmgT120I	GGNCC	2 cut(s)	823, 907
BmiI	GGNNCC	5 cut(s)	327, 457, 824, 1045, 1120
BmrFI	CCNGG	3 cut(s)	240, 387, 659
BmsI	GCATC	2 cut(s)	34, 733
BpiI	GAAGAC	4 cut(s)	66, 799, 831, 1261
Bpu10I	CCTNAGC	1 cut(s)	1318
BpuEI	CTTGAG	2 cut(s)	179, 740
BpuMI	CCSGG	2 cut(s)	240, 659
BsaAI	YACGTR	1 cut(s)	232
BsaJI	CCNNGG	4 cut(s)	101, 385, 657, 1356
BsaWI	WCCGGW	3 cut(s)	254, 875, 1051
BsaXI	ACNNNNNCTCC	2 cut(s)	385, 415
Bsc4I	CCNNNNNNNGG	3 cut(s)	246, 365, 1230
Bse1I	ACTGG	2 cut(s)	608, 1082
Bse3DI	GCAATG	1 cut(s)	780
BseAI	TCCGGA	1 cut(s)	1051
BseBI	CCWGG	1 cut(s)	387
BseDI	CCNNGG	4 cut(s)	101, 385, 657, 1356
BseGI	GGATG	5 cut(s)	436, 604, 1048, 1060, 1114
BseLI	CCNNNNNNNGG	3 cut(s)	246, 365, 1230
BseMI	GCAATG	1 cut(s)	780
BseMII	CTCAG	5 cut(s)	23, 335, 657, 1251, 1332
BseNI	ACTGG	2 cut(s)	608, 1082
BseRI	GAGGAG	1 cut(s)	80
BseSI	GKGCMC	1 cut(s)	223
BseXI	GCAGC	2 cut(s)	15, 735
Bsh1285I	CGRYCG	1 cut(s)	370
BshFI	GGCC	2 cut(s)	73, 106
BshNI	GGYRCC	1 cut(s)	1118
BsiEI	CGRYCG	1 cut(s)	370
BsiHKAI	GWGCWC	1 cut(s)	223
BsiSI	CCGG	5 cut(s)	240, 255, 659, 876, 1052
BsiWI	CGTACG	1 cut(s)	363
BslFI	GGGAC	3 cut(s)	649, 671, 782
BslI	CCNNNNNNNGG	3 cut(s)	246, 365, 1230
BsmAI	GTCTC	1 cut(s)	652
BsmFI	GGGAC	3 cut(s)	649, 671, 782
BsmI	GAATGC	2 cut(s)	184, 933
BsnI	GGCC	2 cut(s)	73, 106
Bsp1286I	GDGCHC	1 cut(s)	223
Bsp13I	TCCGGA	1 cut(s)	1051
Bsp1407I	TGTACA	2 cut(s)	625, 808
Bsp143I	GATC	6 cut(s)	317, 325, 473, 1066, 1090, 1152
BspACI	CCGC	3 cut(s)	107, 216, 236
BspANI	GGCC	2 cut(s)	73, 106
BspCNI	CTCAG	5 cut(s)	24, 334, 656, 1252, 1331
BspEI	TCCGGA	1 cut(s)	1051
BspLI	GGNNCC	5 cut(s)	327, 457, 824, 1045, 1120
BspMI	ACCTGC	1 cut(s)	895
BspPI	GGATC	7 cut(s)	320, 325, 333, 481, 1061, 1098, 1160
BspQI	GCTCTTC	1 cut(s)	1261
BspT107I	GGYRCC	1 cut(s)	1118
BspTI	CTTAAG	1 cut(s)	1292
BsrDI	GCAATG	1 cut(s)	780
BsrGI	TGTACA	2 cut(s)	625, 808
BsrI	ACTGG	2 cut(s)	608, 1082
BssECI	CCNNGG	4 cut(s)	101, 385, 657, 1356
BssMI	GATC	6 cut(s)	317, 325, 473, 1066, 1090, 1152
BssT1I	CCWWGG	1 cut(s)	101
Bst2UI	CCWGG	1 cut(s)	387
Bst4CI	ACNGT	4 cut(s)	288, 368, 467, 676
Bst6I	CTCTTC	1 cut(s)	1261
BstAFI	CTTAAG	1 cut(s)	1292
BstAPI	GCANNNNNTGC	1 cut(s)	1025
BstAUI	TGTACA	2 cut(s)	625, 808
BstBAI	YACGTR	1 cut(s)	232
BstC8I	GCNNGC	1 cut(s)	1324
BstDEI	CTNAG	6 cut(s)	32, 321, 643, 926, 1260, 1318
BstDSI	CCRYGG	1 cut(s)	1356
BstF5I	GGATG	5 cut(s)	436, 604, 1048, 1060, 1114
BstKTI	GATC	6 cut(s)	320, 328, 476, 1069, 1093, 1155
BstMAI	GTCTC	1 cut(s)	652
BstMBI	GATC	6 cut(s)	317, 325, 473, 1066, 1090, 1152
BstMCI	CGRYCG	1 cut(s)	370
BstMWI	GCNNNNNNNGC	5 cut(s)	28, 232, 729, 901, 1025
BstNI	CCWGG	1 cut(s)	387
BstSCI	CCNGG	3 cut(s)	238, 385, 657
BstSLI	GKGCMC	1 cut(s)	223
BstV1I	GCAGC	2 cut(s)	15, 735
BstV2I	GAAGAC	4 cut(s)	66, 799, 831, 1261
BstX2I	RGATCY	2 cut(s)	317, 325
BstYI	RGATCY	2 cut(s)	317, 325
BsuRI	GGCC	2 cut(s)	73, 106
BtgI	CCRYGG	1 cut(s)	1356
BtgZI	GCGATG	1 cut(s)	57
BtrI	CACGTC	1 cut(s)	1015
BtsCI	GGATG	5 cut(s)	436, 604, 1048, 1060, 1114
BtsIMutI	CAGTG	2 cut(s)	284, 483
BveI	ACCTGC	1 cut(s)	895
Cac8I	GCNNGC	1 cut(s)	1324
CaiI	CAGNNNCTG	1 cut(s)	650
Cfr13I	GGNCC	2 cut(s)	823, 907
CseI	GACGC	1 cut(s)	1017
Csp6I	GTAC	4 cut(s)	364, 626, 809, 1119
CviAII	CATG	2 cut(s)	733, 1281
CviQI	GTAC	4 cut(s)	364, 626, 809, 1119
DdeI	CTNAG	6 cut(s)	32, 321, 643, 926, 1260, 1318
DpnI	GATC	6 cut(s)	319, 327, 475, 1068, 1092, 1154
DpnII	GATC	6 cut(s)	317, 325, 473, 1066, 1090, 1152
DraI	TTTAAA	1 cut(s)	510
DraIII	CACNNNGTG	1 cut(s)	929
Eam1104I	CTCTTC	1 cut(s)	1261
EarI	CTCTTC	1 cut(s)	1261
Eco130I	CCWWGG	1 cut(s)	101
Eco147I	AGGCCT	1 cut(s)	73
Eco32I	GATATC	1 cut(s)	979
Eco47I	GGWCC	2 cut(s)	823, 907
EcoRI	GAATTC	1 cut(s)	583
EcoRII	CCWGG	1 cut(s)	385
EcoRV	GATATC	1 cut(s)	979
EcoT14I	CCWWGG	1 cut(s)	101
ErhI	CCWWGG	1 cut(s)	101
FaeI	CATG	2 cut(s)	736, 1284
FaqI	GGGAC	3 cut(s)	649, 671, 782
FatI	CATG	2 cut(s)	732, 1280
Fnu4HI	GCNGC	4 cut(s)	29, 107, 236, 724
FokI	GGATG	5 cut(s)	443, 591, 1035, 1067, 1121
Fsp4HI	GCNGC	4 cut(s)	29, 107, 236, 724
FspBI	CTAG	1 cut(s)	11
GluI	GCNGC	4 cut(s)	29, 107, 236, 724
HaeIII	GGCC	2 cut(s)	73, 106
HapII	CCGG	5 cut(s)	240, 255, 659, 876, 1052
HgaI	GACGC	1 cut(s)	1017
Hin1II	CATG	2 cut(s)	736, 1284
HinfI	GANTC	5 cut(s)	80, 662, 692, 1160, 1262
HpaII	CCGG	5 cut(s)	240, 255, 659, 876, 1052
HphI	GGTGA	1 cut(s)	458
Hpy166II	GTNNAC	3 cut(s)	221, 811, 910
Hpy188I	TCNGA	4 cut(s)	700, 818, 991, 1261
Hpy188III	TCNNGA	5 cut(s)	175, 323, 347, 757, 1052
Hpy8I	GTNNAC	3 cut(s)	221, 811, 910
Hpy99I	CGWCG	1 cut(s)	1016
HpyAV	CCTTC	3 cut(s)	339, 1088, 1177
HpyCH4III	ACNGT	4 cut(s)	288, 368, 467, 676
HpyCH4IV	ACGT	2 cut(s)	231, 1014
HpyCH4V	TGCA	6 cut(s)	91, 221, 593, 618, 711, 723
HpyF10VI	GCNNNNNNNGC	5 cut(s)	28, 232, 729, 901, 1025
HpyF3I	CTNAG	6 cut(s)	32, 321, 643, 926, 1260, 1318
HpySE526I	ACGT	2 cut(s)	231, 1014
Hsp92II	CATG	2 cut(s)	736, 1284
Kpn2I	TCCGGA	1 cut(s)	1051
KpnI	GGTACC	1 cut(s)	1122
Kzo9I	GATC	6 cut(s)	317, 325, 473, 1066, 1090, 1152
LguI	GCTCTTC	1 cut(s)	1261
LmnI	GCTCC	2 cut(s)	658, 901
Lsp1109I	GCAGC	2 cut(s)	15, 735
LweI	GCATC	2 cut(s)	34, 733
MaeI	CTAG	1 cut(s)	11
MaeII	ACGT	2 cut(s)	231, 1014
MaeIII	GTNAC	1 cut(s)	423
MalI	GATC	6 cut(s)	319, 327, 475, 1068, 1092, 1154
MboI	GATC	6 cut(s)	317, 325, 473, 1066, 1090, 1152
MflI	RGATCY	2 cut(s)	317, 325
MhlI	GDGCHC	1 cut(s)	223
MluCI	AATT	7 cut(s)	92, 583, 984, 1142, 1207, 1225, 1309
MlyI	GAGTC	2 cut(s)	671, 1271
MmeI	TCCRAC	1 cut(s)	121
MroI	TCCGGA	1 cut(s)	1051
MseI	TTAA	4 cut(s)	95, 495, 509, 1293
MslI	CAYNNNNRTG	4 cut(s)	578, 731, 1013, 1053
MspCI	CTTAAG	1 cut(s)	1292
MspI	CCGG	5 cut(s)	240, 255, 659, 876, 1052
MspR9I	CCNGG	3 cut(s)	240, 387, 659
Mva1269I	GAATGC	2 cut(s)	184, 933
MvaI	CCWGG	1 cut(s)	387
MwoI	GCNNNNNNNGC	5 cut(s)	28, 232, 729, 901, 1025
NciI	CCSGG	2 cut(s)	240, 659
NdeII	GATC	6 cut(s)	317, 325, 473, 1066, 1090, 1152
NlaIII	CATG	2 cut(s)	736, 1284
NlaIV	GGNNCC	5 cut(s)	327, 457, 824, 1045, 1120
OliI	CACNNNNGTG	1 cut(s)	578
PceI	AGGCCT	1 cut(s)	73
PciSI	GCTCTTC	1 cut(s)	1261
PctI	GAATGC	2 cut(s)	184, 933
PfeI	GAWTC	3 cut(s)	80, 692, 1160
Pfl23II	CGTACG	1 cut(s)	363
PflMI	CCANNNNNTGG	1 cut(s)	1230
PkrI	GCNGC	4 cut(s)	30, 108, 237, 725
PleI	GAGTC	2 cut(s)	670, 1270
PpsI	GAGTC	2 cut(s)	670, 1270
Ppu21I	YACGTR	1 cut(s)	232
Psp6I	CCWGG	1 cut(s)	385
PspGI	CCWGG	1 cut(s)	385
PspLI	CGTACG	1 cut(s)	363
PspN4I	GGNNCC	5 cut(s)	327, 457, 824, 1045, 1120
PspPI	GGNCC	2 cut(s)	823, 907
PstNI	CAGNNNCTG	1 cut(s)	650
PsuI	RGATCY	2 cut(s)	317, 325
RsaI	GTAC	4 cut(s)	365, 627, 810, 1120
RsaNI	GTAC	4 cut(s)	364, 626, 809, 1119
RseI	CAYNNNNRTG	4 cut(s)	578, 731, 1013, 1053
SapI	GCTCTTC	1 cut(s)	1261
SaqAI	TTAA	4 cut(s)	95, 495, 509, 1293
SatI	GCNGC	4 cut(s)	29, 107, 236, 724
Sau3AI	GATC	6 cut(s)	317, 325, 473, 1066, 1090, 1152
Sau96I	GGNCC	2 cut(s)	823, 907
SchI	GAGTC	2 cut(s)	671, 1271
ScrFI	CCNGG	3 cut(s)	240, 387, 659
SduI	GDGCHC	1 cut(s)	223
SfaNI	GCATC	2 cut(s)	34, 733
SinI	GGWCC	2 cut(s)	823, 907
SmiMI	CAYNNNNRTG	4 cut(s)	578, 731, 1013, 1053
SmlI	CTYRAG	3 cut(s)	194, 755, 1292
SmoI	CTYRAG	3 cut(s)	194, 755, 1292
Sse9I	AATT	7 cut(s)	92, 583, 984, 1142, 1207, 1225, 1309
SseBI	AGGCCT	1 cut(s)	73
SsiI	CCGC	3 cut(s)	107, 216, 236
SspMI	CTAG	1 cut(s)	11
StuI	AGGCCT	1 cut(s)	73
StyD4I	CCNGG	3 cut(s)	238, 385, 657
StyI	CCWWGG	1 cut(s)	101
TaaI	ACNGT	4 cut(s)	288, 368, 467, 676
TaiI	ACGT	2 cut(s)	234, 1017
TaqI	TCGA	3 cut(s)	370, 1011, 1065
TasI	AATT	7 cut(s)	92, 583, 984, 1142, 1207, 1225, 1309
TatI	WGTACW	2 cut(s)	625, 808
TauI	GCSGC	2 cut(s)	109, 238
TfiI	GAWTC	3 cut(s)	80, 692, 1160
Tru1I	TTAA	4 cut(s)	95, 495, 509, 1293
Tru9I	TTAA	4 cut(s)	95, 495, 509, 1293
TscAI	CASTG	2 cut(s)	291, 483
TseI	GCWGC	2 cut(s)	28, 723
TspDTI	ATGAA	2 cut(s)	17, 593
TspRI	CASTG	2 cut(s)	291, 483
Van91I	CCANNNNNTGG	1 cut(s)	1230
Vha464I	CTTAAG	1 cut(s)	1292
VneI	GTGCAC	1 cut(s)	219
VpaK11BI	GGWCC	2 cut(s)	823, 907
XapI	RAATTY	3 cut(s)	583, 1142, 1309
XspI	CTAG	1 cut(s)	11

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.