Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0008733

Physical Location & Seq

Genomic Coordinates Reverse (-)

10069507 .. 10073285

Gene Structure 3779 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G129300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1359 bp

ATGAAGATGCTAGTGGTATTGCTCTTGCTGCTGACTTTGAGTAATGCTATCGACCTTGGTGGAGAAAAGGATGAGAAACCGTGTGATTACAATCTGACATTAGAACCAAGACCACATAGCGTGTCCATCTTGGAGTTTGGTGCTGTTGGAGATGGGAGAACATTGAACACCCTTGCCTTCCAGAATGCCATCTTCTACCTCAAGTCTTTTGCCGATAAGGGCGGTGCGCAGCTTTATGTGCCACCGGGAAGGTGGCTTACTGGAAGTTTCAACCTCACCAGTCATCTTACACTCTTTTTGGAAAAAGGCGCTGTCATTCTCGGATCTCAGGATCCATCTCACTGGGAAGTTGTTGAGCCCCTACCCTCATATGGTCGAGGGATTGAACTTCCGGGAGGAAGATATCGTAGCTTGATAAATGGATATATGTTACATGATGTGGTCATAACAGGTGATAATGGAACCATCAATGGCCAGGGCTCAGTTTGGTGGGATTGGTTTAGCTCTCAAACTTTGAACTACAGCCGCCCTCATCTTGTGGAATTTGTTTCGTCTAAATATGTGGTGGTTTCAAACCTCACATTCGTGAATGCTCCTGCTTATAACATCCATCCAGTCTATTGCAGCAATGTACATGTTCATAACATCTCTGTCTCTGCTCCTCCAGAGTCGCCTTATACCGTTGGTATAGTCCCAGATTCTTCTGATAATGTGTGCATAGAAGATTGCAGCATTGGCATGGGGTATGATGCCATTGCCCTTAAGAGTGGTTGGGATGAGTATGGCATTGCCTATGGAAGACCCACCACAAACGTACACATCAGGCGTGTCTACCTACAATCGTCTTCTGGTTCTTCTCTTGCCTTTGGTAGTGAGATGTCTGGTGGCATTTCAGATGTATTTGTGGAGCAGGTCCACATATACAACTCATTTAGTGGCATTCAGTTCAGAACAACAAAAGGTAGAGGGGGCTACATCAGAGAGATCATCATATCAGATGTTGAAATGGAAAACATCCACATGGCATTTGGTGCCTCTGGTCAGTTTGGTTCCCACCCCGACGACAAGTTTGATCCTAATGCTCTCCCGGATTTGGATCACATCACCTTGCAAGATGTGATTGGCACAAACATCACTATTGCTGGAAGCTTCACAGGGATCCAAGAATCCCCCTTCACTTCCTTTTGTCTATCCAATATCTCCTTGTCAGCCAATTCTGGTTCTCCCACTTGGGAATGTTCAAATGTTTCTGGCTCTTCAGATTCTGTCTTCCCTCAACCCTGTTCTGAGTTTAATAGCTCTTATTCCTCTTCCTGCTTTTCGCTACTTACGGCGAATGGAAAAACCGCAGTCTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_28 Pectate_lyase_3

Protein Analysis

453

Amino Acids

49.01

Weight (kDa)

4.97

Isoelectric Point (pI)

47.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008733)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06770 AT3G06770 AT3G06770 AT3G06770 AT3G06770 AT5G49215 AT5G49215
fragaria_vesca	FvH4_4g18930
malus_domestica	MD13G1162000.v1.1 MD16G1161800.v1.1
prunus_persica	Prupe.1G129300_v2.0.a1
pyrus_communis	pycom13g13810 pycom16g13710
rosa_chinensis	RchiOBHm_Chr4g0423821
rosa_laevigata	RLG00000007529
rosa_multiflora	Rmu_sc0003369.1_g000016
rosa_roxburghii	Rroxscaffold_5G00365940
rosa_rugosa	Rorug04G0191000
rosa_samantha	Rh4AG250400 Rh4BG255700 Rh4CG263800 Rh4DG250200
rosa_wichuraiana	Rw4G021450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	603
Acc16I	TGCGCA	1 cut(s)	228
Acc36I	ACCTGC	1 cut(s)	901
AccB1I	GGYRCC	1 cut(s)	1031
AccI	GTMKAC	1 cut(s)	831
AciI	CCGC	3 cut(s)	222, 526, 1347
AclWI	GGATC	7 cut(s)	326, 331, 339, 1067, 1104, 1153, 1166
AcoI	YGGCCR	1 cut(s)	472
AcsI	RAATTY	1 cut(s)	542
AcuI	CTGAAG	1 cut(s)	1242
AfaI	GTAC	2 cut(s)	633, 816
AfiI	CCNNNNNNNGG	2 cut(s)	371, 1093
AflII	CTTAAG	1 cut(s)	761
AflIII	ACRYGT	1 cut(s)	634
AgsI	TTSAA	7 cut(s)	166, 271, 386, 517, 573, 1004, 1242
AjnI	CCWGG	1 cut(s)	474
AleI	CACNNNNGTG	1 cut(s)	584
AluBI	AGCT	5 cut(s)	232, 411, 504, 1149, 1299
AluI	AGCT	5 cut(s)	232, 411, 504, 1149, 1299
Alw26I	GTCTC	1 cut(s)	658
AlwI	GGATC	7 cut(s)	326, 331, 339, 1067, 1104, 1153, 1166
AlwNI	CAGNNNCTG	1 cut(s)	1265
AoxI	GGCC	1 cut(s)	472
ApeKI	GCWGC	4 cut(s)	28, 229, 624, 729
ApoI	RAATTY	1 cut(s)	542
ArsI	GACNNNNNNTTYG	2 cut(s)	1052, 1084
AspLEI	GCGC	2 cut(s)	229, 311
AspS9I	GGNCC	1 cut(s)	913
AsuC2I	CCSGG	3 cut(s)	246, 393, 1088
AsuHPI	GGTGA	3 cut(s)	268, 464, 1096
AvaII	GGWCC	1 cut(s)	913
BalI	TGGCCA	1 cut(s)	474
BamHI	GGATCC	2 cut(s)	331, 1158
BanI	GGYRCC	1 cut(s)	1031
BanII	GRGCYC	2 cut(s)	360, 482
BarI	GAAGNNNNNNTAC	2 cut(s)	241, 273
BbsI	GAAGAC	3 cut(s)	805, 837, 1261
BbvI	GCAGC	4 cut(s)	15, 241, 636, 741
BccI	CCATC	6 cut(s)	134, 146, 197, 343, 473, 618
BceAI	ACGGC	1 cut(s)	1347
BciT130I	CCWGG	1 cut(s)	476
BcnI	CCSGG	3 cut(s)	246, 393, 1088
BcoDI	GTCTC	1 cut(s)	658
BfaI	CTAG	1 cut(s)	11
BfmI	CTRYAG	1 cut(s)	520
BfoI	RGCGCY	1 cut(s)	312
BfrI	CTTAAG	1 cut(s)	761
BfuAI	ACCTGC	1 cut(s)	901
BisI	GCNGC	5 cut(s)	29, 230, 526, 625, 730
BlsI	GCNGC	5 cut(s)	30, 231, 527, 626, 731
Bme1390I	CCNGG	4 cut(s)	246, 393, 476, 1088
Bme18I	GGWCC	1 cut(s)	913
BmgT120I	GGNCC	1 cut(s)	913
BmiI	GGNNCC	5 cut(s)	333, 463, 1033, 1051, 1160
BmrFI	CCNGG	4 cut(s)	246, 393, 476, 1088
BmrI	ACTGGG	1 cut(s)	352
BmsI	GCATC	1 cut(s)	739
BmuI	ACTGGG	1 cut(s)	352
BpiI	GAAGAC	3 cut(s)	805, 837, 1261
BpmI	CTGGAG	1 cut(s)	648
BpuEI	CTTGAG	1 cut(s)	185
BpuMI	CCSGG	3 cut(s)	246, 393, 1088
BsaBI	GATNNNNATC	2 cut(s)	90, 1095
BsaJI	CCNNGG	2 cut(s)	55, 475
Bsc4I	CCNNNNNNNGG	2 cut(s)	371, 1093
Bse1I	ACTGG	4 cut(s)	265, 279, 347, 614
Bse3DI	GCAATG	3 cut(s)	634, 753, 786
Bse8I	GATNNNNATC	2 cut(s)	90, 1095
BseBI	CCWGG	1 cut(s)	476
BseDI	CCNNGG	2 cut(s)	55, 475
BseGI	GGATG	5 cut(s)	76, 606, 610, 781, 1014
BseJI	GATNNNNATC	2 cut(s)	90, 1095
BseLI	CCNNNNNNNGG	2 cut(s)	371, 1093
BseMI	GCAATG	3 cut(s)	634, 753, 786
BseMII	CTCAG	3 cut(s)	341, 495, 1278
BseNI	ACTGG	4 cut(s)	265, 279, 347, 614
BseRI	GAGGAG	1 cut(s)	651
BseXI	GCAGC	4 cut(s)	15, 241, 636, 741
BshFI	GGCC	1 cut(s)	474
BshNI	GGYRCC	1 cut(s)	1031
BsiSI	CCGG	3 cut(s)	245, 392, 1088
BslFI	GGGAC	1 cut(s)	677
BslI	CCNNNNNNNGG	2 cut(s)	371, 1093
BsmAI	GTCTC	1 cut(s)	658
BsmFI	GGGAC	1 cut(s)	677
BsmI	GAATGC	3 cut(s)	190, 595, 939
BsnI	GGCC	1 cut(s)	474
Bsp1286I	GDGCHC	2 cut(s)	360, 482
Bsp1407I	TGTACA	1 cut(s)	631
Bsp143I	GATC	6 cut(s)	323, 331, 984, 1072, 1096, 1158
BspACI	CCGC	3 cut(s)	222, 526, 1347
BspANI	GGCC	1 cut(s)	474
BspCNI	CTCAG	3 cut(s)	340, 494, 1279
BspLI	GGNNCC	5 cut(s)	333, 463, 1033, 1051, 1160
BspMI	ACCTGC	1 cut(s)	901
BspPI	GGATC	7 cut(s)	326, 331, 339, 1067, 1104, 1153, 1166
BspQI	GCTCTTC	1 cut(s)	1261
BspT107I	GGYRCC	1 cut(s)	1031
BspTI	CTTAAG	1 cut(s)	761
BsrDI	GCAATG	3 cut(s)	634, 753, 786
BsrGI	TGTACA	1 cut(s)	631
BsrI	ACTGG	4 cut(s)	265, 279, 347, 614
BssECI	CCNNGG	2 cut(s)	55, 475
BssMI	GATC	6 cut(s)	323, 331, 984, 1072, 1096, 1158
BssT1I	CCWWGG	1 cut(s)	55
Bst2UI	CCWGG	1 cut(s)	476
Bst4CI	ACNGT	2 cut(s)	81, 682
Bst6I	CTCTTC	2 cut(s)	1261, 1315
BstAFI	CTTAAG	1 cut(s)	761
BstAPI	GCANNNNNTGC	1 cut(s)	1031
BstAUI	TGTACA	1 cut(s)	631
BstDEI	CTNAG	3 cut(s)	327, 481, 1287
BstF5I	GGATG	5 cut(s)	76, 606, 610, 781, 1014
BstH2I	RGCGCY	1 cut(s)	312
BstHHI	GCGC	2 cut(s)	229, 311
BstKTI	GATC	6 cut(s)	326, 334, 987, 1075, 1099, 1161
BstMAI	GTCTC	1 cut(s)	658
BstMBI	GATC	6 cut(s)	323, 331, 984, 1072, 1096, 1158
BstMWI	GCNNNNNNNGC	4 cut(s)	28, 238, 735, 1031
BstNI	CCWGG	1 cut(s)	476
BstNSI	RCATGY	1 cut(s)	638
BstSCI	CCNGG	4 cut(s)	244, 391, 474, 1086
BstSFI	CTRYAG	1 cut(s)	520
BstV1I	GCAGC	4 cut(s)	15, 241, 636, 741
BstV2I	GAAGAC	3 cut(s)	805, 837, 1261
BstX2I	RGATCY	3 cut(s)	323, 331, 1158
BstXI	CCANNNNNNTGG	1 cut(s)	342
BstYI	RGATCY	3 cut(s)	323, 331, 1158
BsuRI	GGCC	1 cut(s)	474
BtsCI	GGATG	5 cut(s)	76, 606, 610, 781, 1014
BtsIMutI	CAGTG	1 cut(s)	340
BveI	ACCTGC	1 cut(s)	901
CaiI	CAGNNNCTG	1 cut(s)	1265
CfoI	GCGC	2 cut(s)	229, 311
Cfr13I	GGNCC	1 cut(s)	913
Csp6I	GTAC	2 cut(s)	632, 815
CviAII	CATG	4 cut(s)	434, 635, 739, 1021
CviQI	GTAC	2 cut(s)	632, 815
DdeI	CTNAG	3 cut(s)	327, 481, 1287
DpnI	GATC	6 cut(s)	325, 333, 986, 1074, 1098, 1160
DpnII	GATC	6 cut(s)	323, 331, 984, 1072, 1096, 1158
EaeI	YGGCCR	1 cut(s)	472
Eam1104I	CTCTTC	2 cut(s)	1261, 1315
EarI	CTCTTC	2 cut(s)	1261, 1315
Eco130I	CCWWGG	1 cut(s)	55
Eco24I	GRGCYC	2 cut(s)	360, 482
Eco32I	GATATC	1 cut(s)	404
Eco47I	GGWCC	1 cut(s)	913
Eco57I	CTGAAG	1 cut(s)	1242
EcoRII	CCWGG	1 cut(s)	474
EcoRV	GATATC	1 cut(s)	404
EcoT14I	CCWWGG	1 cut(s)	55
EcoT38I	GRGCYC	2 cut(s)	360, 482
ErhI	CCWWGG	1 cut(s)	55
FaeI	CATG	4 cut(s)	437, 638, 742, 1024
FaqI	GGGAC	1 cut(s)	677
FatI	CATG	4 cut(s)	433, 634, 738, 1020
FauNDI	CATATG	1 cut(s)	370
FblI	GTMKAC	1 cut(s)	831
Fnu4HI	GCNGC	5 cut(s)	29, 230, 526, 625, 730
FokI	GGATG	5 cut(s)	83, 593, 597, 788, 1001
FriOI	GRGCYC	2 cut(s)	360, 482
Fsp4HI	GCNGC	5 cut(s)	29, 230, 526, 625, 730
FspBI	CTAG	1 cut(s)	11
FspI	TGCGCA	1 cut(s)	228
GlaI	GCGC	2 cut(s)	228, 310
GluI	GCNGC	5 cut(s)	29, 230, 526, 625, 730
GsuI	CTGGAG	1 cut(s)	648
HaeII	RGCGCY	1 cut(s)	312
HaeIII	GGCC	1 cut(s)	474
HapII	CCGG	3 cut(s)	245, 392, 1088
HhaI	GCGC	2 cut(s)	229, 311
Hin1II	CATG	4 cut(s)	437, 638, 742, 1024
Hin6I	GCGC	2 cut(s)	227, 309
HinP1I	GCGC	2 cut(s)	227, 309
HindIII	AAGCTT	1 cut(s)	1147
HinfI	GANTC	4 cut(s)	668, 698, 1166, 1262
HpaII	CCGG	3 cut(s)	245, 392, 1088
HphI	GGTGA	3 cut(s)	268, 464, 1096
Hpy166II	GTNNAC	3 cut(s)	817, 832, 916
Hpy188I	TCNGA	9 cut(s)	96, 323, 706, 895, 950, 980, 997, 1261, 1288
Hpy188III	TCNNGA	4 cut(s)	181, 329, 586, 665
Hpy8I	GTNNAC	3 cut(s)	817, 832, 916
Hpy99I	CGWCG	1 cut(s)	1064
HpyAV	CCTTC	3 cut(s)	187, 243, 1183
HpyCH4III	ACNGT	2 cut(s)	81, 682
HpyCH4IV	ACGT	1 cut(s)	813
HpyCH4V	TGCA	4 cut(s)	624, 717, 729, 1111
HpyF10VI	GCNNNNNNNGC	4 cut(s)	28, 238, 735, 1031
HpyF3I	CTNAG	3 cut(s)	327, 481, 1287
HpySE526I	ACGT	1 cut(s)	813
Hsp92II	CATG	4 cut(s)	437, 638, 742, 1024
HspAI	GCGC	2 cut(s)	227, 309
Kzo9I	GATC	6 cut(s)	323, 331, 984, 1072, 1096, 1158
LguI	GCTCTTC	1 cut(s)	1261
LmnI	GCTCC	3 cut(s)	598, 664, 907
Lsp1109I	GCAGC	4 cut(s)	15, 241, 636, 741
LweI	GCATC	1 cut(s)	739
MaeI	CTAG	1 cut(s)	11
MaeII	ACGT	1 cut(s)	813
MaeIII	GTNAC	1 cut(s)	429
MalI	GATC	6 cut(s)	325, 333, 986, 1074, 1098, 1160
MboI	GATC	6 cut(s)	323, 331, 984, 1072, 1096, 1158
MflI	RGATCY	3 cut(s)	323, 331, 1158
MhlI	GDGCHC	2 cut(s)	360, 482
MlsI	TGGCCA	1 cut(s)	474
MluCI	AATT	2 cut(s)	542, 1213
MluNI	TGGCCA	1 cut(s)	474
MlyI	GAGTC	1 cut(s)	677
MmeI	TCCRAC	1 cut(s)	127
Mox20I	TGGCCA	1 cut(s)	474
MscI	TGGCCA	1 cut(s)	474
MseI	TTAA	2 cut(s)	762, 1293
MslI	CAYNNNNRTG	3 cut(s)	584, 737, 1019
Msp20I	TGGCCA	1 cut(s)	474
MspCI	CTTAAG	1 cut(s)	761
MspI	CCGG	3 cut(s)	245, 392, 1088
MspR9I	CCNGG	4 cut(s)	246, 393, 476, 1088
Mva1269I	GAATGC	3 cut(s)	190, 595, 939
MvaI	CCWGG	1 cut(s)	476
MwoI	GCNNNNNNNGC	4 cut(s)	28, 238, 735, 1031
NciI	CCSGG	3 cut(s)	246, 393, 1088
NdeI	CATATG	1 cut(s)	370
NdeII	GATC	6 cut(s)	323, 331, 984, 1072, 1096, 1158
NlaIII	CATG	4 cut(s)	437, 638, 742, 1024
NlaIV	GGNNCC	5 cut(s)	333, 463, 1033, 1051, 1160
NsbI	TGCGCA	1 cut(s)	228
NspI	RCATGY	1 cut(s)	638
OliI	CACNNNNGTG	1 cut(s)	584
PciI	ACATGT	1 cut(s)	634
PciSI	GCTCTTC	1 cut(s)	1261
PctI	GAATGC	3 cut(s)	190, 595, 939
PfeI	GAWTC	3 cut(s)	698, 1166, 1262
PfoI	TCCNGGA	2 cut(s)	391, 1086
PkrI	GCNGC	5 cut(s)	30, 231, 527, 626, 731
PleI	GAGTC	1 cut(s)	676
PpsI	GAGTC	1 cut(s)	676
PscI	ACATGT	1 cut(s)	634
PsiI	TTATAA	1 cut(s)	603
Psp6I	CCWGG	1 cut(s)	474
PspGI	CCWGG	1 cut(s)	474
PspN4I	GGNNCC	5 cut(s)	333, 463, 1033, 1051, 1160
PspPI	GGNCC	1 cut(s)	913
PstNI	CAGNNNCTG	1 cut(s)	1265
PsuI	RGATCY	3 cut(s)	323, 331, 1158
RsaI	GTAC	2 cut(s)	633, 816
RsaNI	GTAC	2 cut(s)	632, 815
RseI	CAYNNNNRTG	3 cut(s)	584, 737, 1019
SapI	GCTCTTC	1 cut(s)	1261
SaqAI	TTAA	2 cut(s)	762, 1293
SatI	GCNGC	5 cut(s)	29, 230, 526, 625, 730
Sau3AI	GATC	6 cut(s)	323, 331, 984, 1072, 1096, 1158
Sau96I	GGNCC	1 cut(s)	913
SchI	GAGTC	1 cut(s)	677
ScrFI	CCNGG	4 cut(s)	246, 393, 476, 1088
SduI	GDGCHC	2 cut(s)	360, 482
SfaNI	GCATC	1 cut(s)	739
SfcI	CTRYAG	1 cut(s)	520
SinI	GGWCC	1 cut(s)	913
SmiMI	CAYNNNNRTG	3 cut(s)	584, 737, 1019
SmlI	CTYRAG	2 cut(s)	200, 761
SmoI	CTYRAG	2 cut(s)	200, 761
Sse9I	AATT	2 cut(s)	542, 1213
SsiI	CCGC	3 cut(s)	222, 526, 1347
SspMI	CTAG	1 cut(s)	11
StyD4I	CCNGG	4 cut(s)	244, 391, 474, 1086
StyI	CCWWGG	1 cut(s)	55
TaaI	ACNGT	2 cut(s)	81, 682
TaiI	ACGT	1 cut(s)	816
TaqI	TCGA	2 cut(s)	51, 376
TasI	AATT	2 cut(s)	542, 1213
TatI	WGTACW	1 cut(s)	631
TauI	GCSGC	1 cut(s)	528
TfiI	GAWTC	3 cut(s)	698, 1166, 1262
Tru1I	TTAA	2 cut(s)	762, 1293
Tru9I	TTAA	2 cut(s)	762, 1293
TscAI	CASTG	1 cut(s)	347
TseI	GCWGC	4 cut(s)	28, 229, 624, 729
TspDTI	ATGAA	2 cut(s)	17, 629
TspRI	CASTG	1 cut(s)	347
Vha464I	CTTAAG	1 cut(s)	761
VpaK11BI	GGWCC	1 cut(s)	913
XapI	RAATTY	1 cut(s)	542
XceI	RCATGY	1 cut(s)	638
XcmI	CCANNNNNNNNNTGG	2 cut(s)	249, 1025
XmiI	GTMKAC	1 cut(s)	831
XspI	CTAG	1 cut(s)	11

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.