MD13G1162000.v1.1

positive regulation of rRNA processing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0008733
Physical Location & Seq
Reverse (-)
12749739 .. 12752551
2813 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1162000.v1.1.491

Sequence Viewer

Length: 1548 bp
ATGCTTTGTGTCATTCAACAATTAATGCCTGTACACCACCACACGGTTAGAGCAATAAGGCAGCCCTTGCTCCTTGGTTGCTCTGCTTCTTCTTCTTCTTCTTCTTCCTTGTCCTTCTCTGCTCTGCACTTCTACTGCTTTTTGGCCACTCCTGCTGCAGAGAGAGAGCTTTCACTCATGAAGATGCTAGTGGTGCTTCTGCTGCTGCTGGCCGTGAGTAATGCCGTCGAAATTGACGGAGAAGACGATGAGAAACCGTGTGATAATAAACTGACATTAGAGCCAAGGCCGCACAGTGTGTCCATCTTAGAATTTGGCGCTGTCGGAGATGGCAAGACATTGAACACTCTTGCCTTTCAGAATGCCATCTTCTATCTCAAGTCTTTCGCCGATAAGGGCGGTGCTCAGCTCTATGTGCCGCCGGGGAGGTGGCTTACCGGAAGCTTCAACCTCACCAGCCACCTCACACTGTTTTTGGAAAAGGATGCTGTCATTCTTGGATCTCAGGATCCGTCTCATTGGGAAATTGTTGAGCCTTTACCCTCGTACGGTCGAGGGATTGAACTCCCCGGGAGGAGATATCGTAGCTTGATAAATGGTTATATGTTACATGATGTGGTCATAACAGGTGATAATGGAACCATCAATGGCCAGGGATCGGTTTGGTGGGATTGGTTTAGCTCCCAATCTCTGAACTACAGCCGCCCGCATCTTGTGGAATTCGTTATGTCTAAATACGTGGTGGTTTCGAACCTCACATTTGTAAATGCTCCCGCTTACAACATCCATCCAGTCTATTGCAGTAATGTACATGTTCTCAACATATCTGTATCTGCTCCTCCGGACTCCCCTCATACTGTCGGAATAGTCCCAGATTCTTCTGATACTGTGTGCATAGAAGATTGCATCATTGGCATGGGGTATGATGCCATTGCTCTCAAGAGTGGTTGGGACGAGTACGGTATTGCCTATGGAAGACCTACCACAAATGTACACATCCGGCATGTCACCTTACAATCAGCTACTGGTTCTTCTCTTGCCCTTGGTAGTGAGATGTCCGGTGGCATTTCTAACGTACATGTTGAGCAGGTCCGCCTCCACAACTCCATTAGCGGCATTCAGTTCCGAACAACAAAGGGTAGAGGCGGTTACATCAAAGACATCATCATATCAGATGTCGAAGTAGAAAACATCTACATGGCATTTGGTGCCTCTGGCCAGTTTGGTTCTCATCCTGATGACAAATATGATCCTAACGCTCTCCCTGTTTTGGATCACATCACATTGCAAGACGTGGTTGGCACAAACATCACCATTGCCGGATGCTTCACTGGCATCGAAGAATCACCATTCACTTCTTTCTGTCTATCCAACATCTCCTTATCATTAAATTCAGCTTCGCCCACCACTTGGGATTGTTCATATGTTTCCGGCTCTTCTGAGTCTGTCTTTCCAGAACCATGTTCTGACCTCAATACCTCGTATTCAAATCCTTCCTCCGCCCACATTTCGCTGCTCACCGGGAATGGAAAAGCCGTGGTCTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000462 GO:0000785 GO:0000792 GO:0001650 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005730 GO:0006139 GO:0006355 GO:0006356 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0009267 GO:0009605 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009991 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0016072 GO:0019219 GO:0019222 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0031981 GO:0032040 GO:0032991 GO:0033553 GO:0033554 GO:0034455 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0042594 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0045893 GO:0045935 GO:0045943 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0071496 GO:0071704 GO:0071840 GO:0080090 GO:0090069 GO:0090070 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1990904 GO:2000112 GO:2000232 GO:2000234 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko00280 ko00630 ko00640 ko01100 ko01120 ko01130 ko01200 ko03008 map00280 map00630 map00640 map01100 map01120 map01130 map01200 map03008
Pfam Domains
Protein Families
Utp12 WD40

Protein Analysis

516

Amino Acids

55.75

Weight (kDa)

5.29

Isoelectric Point (pI)

48.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_28 PF00295 198 - 477 6.1e-28 Glycosyl hydrolases family 28
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1078
AccB1I GGYRCC 1 cut(s) 1208
AccB7I CCANNNNNTGG 1 cut(s) 1410
AccIII TCCGGA 1 cut(s) 841
AclWI GGATC 6 cut(s) 503, 508, 516, 664, 1244, 1281
AcoI YGGCCR 4 cut(s) 144, 210, 649, 1216
AcsI RAATTY 3 cut(s) 311, 719, 1390
AdeI CACNNNGTG 1 cut(s) 298
AfaI GTAC 6 cut(s) 33, 548, 810, 959, 993, 1077
AfiI CCNNNNNNNGG 5 cut(s) 43, 548, 658, 1270, 1410
AflIII ACRYGT 2 cut(s) 811, 1078
AgsI TTSAA 5 cut(s) 17, 343, 448, 563, 1488
AjiI CACGTC 1 cut(s) 1294
AjnI CCWGG 1 cut(s) 651
AluBI AGCT 7 cut(s) 169, 409, 444, 588, 681, 1022, 1397
AluI AGCT 7 cut(s) 169, 409, 444, 588, 681, 1022, 1397
Alw21I GWGCWC 1 cut(s) 406
Alw26I GTCTC 1 cut(s) 519
AlwI GGATC 6 cut(s) 503, 508, 516, 664, 1244, 1281
AlwNI CAGNNNCTG 1 cut(s) 1025
Ama87I CYCGRG 1 cut(s) 569
Aor13HI TCCGGA 1 cut(s) 841
AoxI GGCC 5 cut(s) 144, 210, 287, 649, 1216
ApeKI GCWGC 5 cut(s) 61, 155, 202, 205, 1513
ApoI RAATTY 3 cut(s) 311, 719, 1390
AseI ATTAAT 1 cut(s) 23
AspLEI GCGC 1 cut(s) 320
AspS9I GGNCC 1 cut(s) 1090
AsuC2I CCSGG 4 cut(s) 423, 570, 571, 1522
AsuHPI GGTGA 6 cut(s) 445, 641, 1000, 1303, 1338, 1510
AsuII TTCGAA 1 cut(s) 749
AvaI CYCGRG 1 cut(s) 569
AvaII GGWCC 1 cut(s) 1090
BalI TGGCCA 3 cut(s) 146, 651, 1218
BamHI GGATCC 1 cut(s) 508
BanI GGYRCC 1 cut(s) 1208
BbsI GAAGAC 2 cut(s) 249, 982
Bbv12I GWGCWC 1 cut(s) 406
BbvI GCAGC 5 cut(s) 73, 142, 189, 192, 1500
BccI CCATC 5 cut(s) 311, 323, 374, 650, 795
BceAI ACGGC 3 cut(s) 197, 209, 1520
BciT130I CCWGG 1 cut(s) 653
BcnI CCSGG 4 cut(s) 423, 570, 571, 1522
BcoDI GTCTC 1 cut(s) 519
BfaI CTAG 1 cut(s) 188
BfmI CTRYAG 2 cut(s) 156, 697
BfoI RGCGCY 1 cut(s) 321
BfuAI ACCTGC 1 cut(s) 1078
BisI GCNGC 9 cut(s) 62, 156, 203, 206, 290, 419, 703, 1114, 1514
BlpI GCTNAGC 1 cut(s) 405
BlsI GCNGC 9 cut(s) 63, 157, 204, 207, 291, 420, 704, 1115, 1515
Bme1390I CCNGG 5 cut(s) 423, 570, 571, 653, 1522
Bme18I GGWCC 1 cut(s) 1090
BmeT110I CYCGRG 1 cut(s) 569
BmgBI CACGTC 1 cut(s) 1294
BmgT120I GGNCC 1 cut(s) 1090
BmiI GGNNCC 3 cut(s) 510, 640, 1210
BmrFI CCNGG 5 cut(s) 423, 570, 571, 653, 1522
BmsI GCATC 7 cut(s) 174, 475, 718, 915, 916, 1313, 1344
BpiI GAAGAC 2 cut(s) 249, 982
Bpu1102I GCTNAGC 1 cut(s) 405
Bpu14I TTCGAA 1 cut(s) 749
BpuEI CTTGAG 2 cut(s) 362, 923
BpuMI CCSGG 4 cut(s) 423, 570, 571, 1522
BsaAI YACGTR 1 cut(s) 739
BsaJI CCNNGG 8 cut(s) 73, 284, 422, 568, 569, 652, 1042, 1536
BsaWI WCCGGW 3 cut(s) 437, 841, 1058
BsaXI ACNNNNNCTCC 2 cut(s) 568, 598
Bsc4I CCNNNNNNNGG 5 cut(s) 43, 548, 658, 1270, 1410
Bse1I ACTGG 4 cut(s) 791, 1030, 1219, 1336
Bse3DI GCAATG 3 cut(s) 930, 1283, 1314
BseAI TCCGGA 1 cut(s) 841
BseBI CCWGG 1 cut(s) 653
BseDI CCNNGG 8 cut(s) 73, 284, 422, 568, 569, 652, 1042, 1536
BseGI GGATG 6 cut(s) 490, 783, 787, 996, 1231, 1328
BseLI CCNNNNNNNGG 5 cut(s) 43, 548, 658, 1270, 1410
BseMI GCAATG 3 cut(s) 930, 1283, 1314
BseMII CTCAG 3 cut(s) 419, 518, 1431
BseNI ACTGG 4 cut(s) 791, 1030, 1219, 1336
BseRI GAGGAG 2 cut(s) 589, 828
BseXI GCAGC 5 cut(s) 73, 142, 189, 192, 1500
BsgI GTGCAG 1 cut(s) 110
Bsh1285I CGRYCG 1 cut(s) 553
BshFI GGCC 5 cut(s) 146, 212, 289, 651, 1218
BshNI GGYRCC 1 cut(s) 1208
BsiEI CGRYCG 1 cut(s) 553
BsiHKAI GWGCWC 1 cut(s) 406
BsiHKCI CYCGRG 1 cut(s) 569
BsiSI CCGG 9 cut(s) 422, 438, 570, 842, 1000, 1059, 1320, 1431, 1521
BsiWI CGTACG 1 cut(s) 546
BslFI GGGAC 2 cut(s) 854, 965
BslI CCNNNNNNNGG 5 cut(s) 43, 548, 658, 1270, 1410
BsmAI GTCTC 1 cut(s) 519
BsmBI CGTCTC 1 cut(s) 519
BsmFI GGGAC 2 cut(s) 854, 965
BsmI GAATGC 2 cut(s) 367, 1116
BsnI GGCC 5 cut(s) 146, 212, 289, 651, 1218
BsoBI CYCGRG 1 cut(s) 569
Bsp119I TTCGAA 1 cut(s) 749
Bsp1286I GDGCHC 1 cut(s) 406
Bsp13I TCCGGA 1 cut(s) 841
Bsp1407I TGTACA 3 cut(s) 31, 808, 991
Bsp143I GATC 5 cut(s) 500, 508, 656, 1249, 1273
Bsp1720I GCTNAGC 1 cut(s) 405
BspANI GGCC 5 cut(s) 146, 212, 289, 651, 1218
BspCNI CTCAG 3 cut(s) 418, 517, 1432
BspEI TCCGGA 1 cut(s) 841
BspHI TCATGA 1 cut(s) 177
BspLI GGNNCC 3 cut(s) 510, 640, 1210
BspMAI CTGCAG 1 cut(s) 160
BspMI ACCTGC 1 cut(s) 1078
BspPI GGATC 6 cut(s) 503, 508, 516, 664, 1244, 1281
BspQI GCTCTTC 1 cut(s) 1441
BspT104I TTCGAA 1 cut(s) 749
BspT107I GGYRCC 1 cut(s) 1208
BsrDI GCAATG 3 cut(s) 930, 1283, 1314
BsrGI TGTACA 3 cut(s) 31, 808, 991
BsrI ACTGG 4 cut(s) 791, 1030, 1219, 1336
BssECI CCNNGG 8 cut(s) 73, 284, 422, 568, 569, 652, 1042, 1536
BssMI GATC 5 cut(s) 500, 508, 656, 1249, 1273
BssT1I CCWWGG 3 cut(s) 73, 284, 1042
Bst2UI CCWGG 1 cut(s) 653
Bst4CI ACNGT 8 cut(s) 46, 258, 296, 471, 551, 859, 889, 962
Bst6I CTCTTC 1 cut(s) 1441
BstAPI GCANNNNNTGC 2 cut(s) 67, 1208
BstAUI TGTACA 3 cut(s) 31, 808, 991
BstBAI YACGTR 1 cut(s) 739
BstBI TTCGAA 1 cut(s) 749
BstC8I GCNNGC 2 cut(s) 210, 707
BstDEI CTNAG 4 cut(s) 307, 405, 504, 1440
BstDSI CCRYGG 1 cut(s) 1536
BstF5I GGATG 6 cut(s) 490, 783, 787, 996, 1231, 1328
BstH2I RGCGCY 1 cut(s) 321
BstHHI GCGC 1 cut(s) 320
BstKTI GATC 5 cut(s) 503, 511, 659, 1252, 1276
BstMAI GTCTC 1 cut(s) 519
BstMBI GATC 5 cut(s) 500, 508, 656, 1249, 1273
BstMCI CGRYCG 1 cut(s) 553
BstMWI GCNNNNNNNGC 9 cut(s) 67, 152, 193, 202, 289, 415, 912, 1208, 1332
BstNI CCWGG 1 cut(s) 653
BstNSI RCATGY 3 cut(s) 815, 1007, 1082
BstSCI CCNGG 5 cut(s) 421, 568, 569, 651, 1520
BstSFI CTRYAG 2 cut(s) 156, 697
BstV1I GCAGC 5 cut(s) 73, 142, 189, 192, 1500
BstV2I GAAGAC 2 cut(s) 249, 982
BstX2I RGATCY 2 cut(s) 500, 508
BstYI RGATCY 2 cut(s) 500, 508
BsuRI GGCC 5 cut(s) 146, 212, 289, 651, 1218
BtgI CCRYGG 1 cut(s) 1536
BtrI CACGTC 1 cut(s) 1294
BtsCI GGATG 6 cut(s) 490, 783, 787, 996, 1231, 1328
BtsIMutI CAGTG 3 cut(s) 301, 467, 1329
BveI ACCTGC 1 cut(s) 1078
Cac8I GCNNGC 2 cut(s) 210, 707
CaiI CAGNNNCTG 1 cut(s) 1025
CciI TCATGA 1 cut(s) 177
CfoI GCGC 1 cut(s) 320
Cfr13I GGNCC 1 cut(s) 1090
Cfr9I CCCGGG 1 cut(s) 569
Csp6I GTAC 6 cut(s) 32, 547, 809, 958, 992, 1076
CviAII CATG 8 cut(s) 178, 611, 812, 916, 1004, 1079, 1198, 1461
CviQI GTAC 6 cut(s) 32, 547, 809, 958, 992, 1076
DdeI CTNAG 4 cut(s) 307, 405, 504, 1440
DpnI GATC 5 cut(s) 502, 510, 658, 1251, 1275
DpnII GATC 5 cut(s) 500, 508, 656, 1249, 1273
DraIII CACNNNGTG 1 cut(s) 298
EaeI YGGCCR 4 cut(s) 144, 210, 649, 1216
Eam1104I CTCTTC 1 cut(s) 1441
EarI CTCTTC 1 cut(s) 1441
EciI GGCGGA 2 cut(s) 1082, 1489
Eco130I CCWWGG 3 cut(s) 73, 284, 1042
Eco32I GATATC 1 cut(s) 581
Eco47I GGWCC 1 cut(s) 1090
Eco88I CYCGRG 1 cut(s) 569
EcoRI GAATTC 1 cut(s) 719
EcoRII CCWGG 1 cut(s) 651
EcoRV GATATC 1 cut(s) 581
EcoT14I CCWWGG 3 cut(s) 73, 284, 1042
ErhI CCWWGG 3 cut(s) 73, 284, 1042
Esp3I CGTCTC 1 cut(s) 519
FaeI CATG 8 cut(s) 181, 614, 815, 919, 1007, 1082, 1201, 1464
FaqI GGGAC 2 cut(s) 854, 965
FatI CATG 8 cut(s) 177, 610, 811, 915, 1003, 1078, 1197, 1460
FauI CCCGC 2 cut(s) 714, 781
FauNDI CATATG 1 cut(s) 1423
Fnu4HI GCNGC 9 cut(s) 62, 156, 203, 206, 290, 419, 703, 1114, 1514
FokI GGATG 6 cut(s) 497, 770, 774, 983, 1218, 1335
Fsp4HI GCNGC 9 cut(s) 62, 156, 203, 206, 290, 419, 703, 1114, 1514
FspBI CTAG 1 cut(s) 188
GlaI GCGC 1 cut(s) 319
GluI GCNGC 9 cut(s) 62, 156, 203, 206, 290, 419, 703, 1114, 1514
HaeII RGCGCY 1 cut(s) 321
HaeIII GGCC 5 cut(s) 146, 212, 289, 651, 1218
HapII CCGG 9 cut(s) 422, 438, 570, 842, 1000, 1059, 1320, 1431, 1521
HhaI GCGC 1 cut(s) 320
Hin1II CATG 8 cut(s) 181, 614, 815, 919, 1007, 1082, 1201, 1464
Hin6I GCGC 1 cut(s) 318
HinP1I GCGC 1 cut(s) 318
HindIII AAGCTT 1 cut(s) 442
HinfI GANTC 4 cut(s) 845, 875, 1343, 1442
HpaII CCGG 9 cut(s) 422, 438, 570, 842, 1000, 1059, 1320, 1431, 1521
HphI GGTGA 6 cut(s) 445, 641, 1000, 1303, 1338, 1510
Hpy166II GTNNAC 2 cut(s) 34, 994
Hpy188I TCNGA 9 cut(s) 326, 360, 693, 863, 883, 1127, 1174, 1441, 1468
Hpy188III TCNNGA 6 cut(s) 178, 506, 842, 940, 1235, 1454
Hpy8I GTNNAC 2 cut(s) 34, 994
Hpy99I CGWCG 1 cut(s) 230
HpyAV CCTTC 2 cut(s) 124, 1503
HpyCH4III ACNGT 8 cut(s) 46, 258, 296, 471, 551, 859, 889, 962
HpyCH4IV ACGT 3 cut(s) 738, 1074, 1293
HpyCH4V TGCA 6 cut(s) 127, 158, 801, 894, 906, 1288
HpyF10VI GCNNNNNNNGC 9 cut(s) 67, 152, 193, 202, 289, 415, 912, 1208, 1332
HpyF3I CTNAG 4 cut(s) 307, 405, 504, 1440
HpySE526I ACGT 3 cut(s) 738, 1074, 1293
Hsp92II CATG 8 cut(s) 181, 614, 815, 919, 1007, 1082, 1201, 1464
HspAI GCGC 1 cut(s) 318
Kpn2I TCCGGA 1 cut(s) 841
Kzo9I GATC 5 cut(s) 500, 508, 656, 1249, 1273
LguI GCTCTTC 1 cut(s) 1441
LmnI GCTCC 4 cut(s) 75, 686, 775, 841
Lsp1109I GCAGC 5 cut(s) 73, 142, 189, 192, 1500
LweI GCATC 7 cut(s) 174, 475, 718, 915, 916, 1313, 1344
MaeI CTAG 1 cut(s) 188
MaeII ACGT 3 cut(s) 738, 1074, 1293
MaeIII GTNAC 3 cut(s) 606, 1006, 1148
MalI GATC 5 cut(s) 502, 510, 658, 1251, 1275
MboI GATC 5 cut(s) 500, 508, 656, 1249, 1273
MflI RGATCY 2 cut(s) 500, 508
MhlI GDGCHC 1 cut(s) 406
MlsI TGGCCA 3 cut(s) 146, 651, 1218
MluCI AATT 6 cut(s) 20, 231, 311, 525, 719, 1390
MluNI TGGCCA 3 cut(s) 146, 651, 1218
MlyI GAGTC 2 cut(s) 839, 1451
MmeI TCCRAC 3 cut(s) 304, 841, 1395
Mox20I TGGCCA 3 cut(s) 146, 651, 1218
MroI TCCGGA 1 cut(s) 841
MscI TGGCCA 3 cut(s) 146, 651, 1218
MseI TTAA 2 cut(s) 23, 1388
MslI CAYNNNNRTG 4 cut(s) 182, 914, 1196, 1236
Msp20I TGGCCA 3 cut(s) 146, 651, 1218
MspI CCGG 9 cut(s) 422, 438, 570, 842, 1000, 1059, 1320, 1431, 1521
MspR9I CCNGG 5 cut(s) 423, 570, 571, 653, 1522
Mva1269I GAATGC 2 cut(s) 367, 1116
MvaI CCWGG 1 cut(s) 653
MwoI GCNNNNNNNGC 9 cut(s) 67, 152, 193, 202, 289, 415, 912, 1208, 1332
NciI CCSGG 4 cut(s) 423, 570, 571, 1522
NdeI CATATG 1 cut(s) 1423
NdeII GATC 5 cut(s) 500, 508, 656, 1249, 1273
NlaIII CATG 8 cut(s) 181, 614, 815, 919, 1007, 1082, 1201, 1464
NlaIV GGNNCC 3 cut(s) 510, 640, 1210
NmuCI GTSAC 1 cut(s) 1006
NspI RCATGY 3 cut(s) 815, 1007, 1082
NspV TTCGAA 1 cut(s) 749
PagI TCATGA 1 cut(s) 177
PciI ACATGT 2 cut(s) 811, 1078
PciSI GCTCTTC 1 cut(s) 1441
PcsI WCGNNNNNNNCGW 1 cut(s) 243
PctI GAATGC 2 cut(s) 367, 1116
PfeI GAWTC 2 cut(s) 875, 1343
Pfl23II CGTACG 1 cut(s) 546
PflMI CCANNNNNTGG 1 cut(s) 1410
PkrI GCNGC 9 cut(s) 63, 157, 204, 207, 291, 420, 704, 1115, 1515
PleI GAGTC 2 cut(s) 839, 1450
PpsI GAGTC 2 cut(s) 839, 1450
Ppu21I YACGTR 1 cut(s) 739
PscI ACATGT 2 cut(s) 811, 1078
PshBI ATTAAT 1 cut(s) 23
Psp6I CCWGG 1 cut(s) 651
PspGI CCWGG 1 cut(s) 651
PspLI CGTACG 1 cut(s) 546
PspN4I GGNNCC 3 cut(s) 510, 640, 1210
PspPI GGNCC 1 cut(s) 1090
PstI CTGCAG 1 cut(s) 160
PstNI CAGNNNCTG 1 cut(s) 1025
PsuI RGATCY 2 cut(s) 500, 508
RsaI GTAC 6 cut(s) 33, 548, 810, 959, 993, 1077
RsaNI GTAC 6 cut(s) 32, 547, 809, 958, 992, 1076
RseI CAYNNNNRTG 4 cut(s) 182, 914, 1196, 1236
SapI GCTCTTC 1 cut(s) 1441
SaqAI TTAA 2 cut(s) 23, 1388
SatI GCNGC 9 cut(s) 62, 156, 203, 206, 290, 419, 703, 1114, 1514
Sau3AI GATC 5 cut(s) 500, 508, 656, 1249, 1273
Sau96I GGNCC 1 cut(s) 1090
SchI GAGTC 2 cut(s) 839, 1451
ScrFI CCNGG 5 cut(s) 423, 570, 571, 653, 1522
SduI GDGCHC 1 cut(s) 406
SfaNI GCATC 7 cut(s) 174, 475, 718, 915, 916, 1313, 1344
SfcI CTRYAG 2 cut(s) 156, 697
SfuI TTCGAA 1 cut(s) 749
SinI GGWCC 1 cut(s) 1090
SmaI CCCGGG 1 cut(s) 571
SmiMI CAYNNNNRTG 4 cut(s) 182, 914, 1196, 1236
SmlI CTYRAG 2 cut(s) 377, 938
SmoI CTYRAG 2 cut(s) 377, 938
Sse9I AATT 6 cut(s) 20, 231, 311, 525, 719, 1390
SspMI CTAG 1 cut(s) 188
StyD4I CCNGG 5 cut(s) 421, 568, 569, 651, 1520
StyI CCWWGG 3 cut(s) 73, 284, 1042
TaaI ACNGT 8 cut(s) 46, 258, 296, 471, 551, 859, 889, 962
TaiI ACGT 3 cut(s) 741, 1077, 1296
TaqI TCGA 5 cut(s) 228, 553, 749, 1179, 1338
TasI AATT 6 cut(s) 20, 231, 311, 525, 719, 1390
TatI WGTACW 3 cut(s) 31, 808, 991
TauI GCSGC 4 cut(s) 292, 421, 705, 1116
TfiI GAWTC 2 cut(s) 875, 1343
Tru1I TTAA 2 cut(s) 23, 1388
Tru9I TTAA 2 cut(s) 23, 1388
TscAI CASTG 3 cut(s) 301, 474, 1336
TseFI GTSAC 1 cut(s) 1006
TseI GCWGC 5 cut(s) 61, 155, 202, 205, 1513
Tsp45I GTSAC 1 cut(s) 1006
TspDTI ATGAA 2 cut(s) 194, 1410
TspGWI ACGGA 2 cut(s) 252, 501
TspMI CCCGGG 1 cut(s) 569
TspRI CASTG 3 cut(s) 301, 474, 1336
Van91I CCANNNNNTGG 1 cut(s) 1410
VpaK11BI GGWCC 1 cut(s) 1090
VspI ATTAAT 1 cut(s) 23
XapI RAATTY 3 cut(s) 311, 719, 1390
XceI RCATGY 3 cut(s) 815, 1007, 1082
XmaI CCCGGG 1 cut(s) 569
XspI CTAG 1 cut(s) 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.