Rorug04G0191000

Belongs to the glycosyl hydrolase 28 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0008733
Physical Location & Seq
Reverse (-)
33133571 .. 33192784
59214 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0191000.1

Sequence Viewer

Length: 1029 bp
ATGGCGAGCATGAGGAGGATGAAGCTCGGGTCACAAGGCCTGGAGGTCTCAGCTCAAGGACTGGGCTGCATGGGCATGTCTGCCTTCTATGGCGCCCCGAAGCCCGAAGCCGACATGATCAAGCTCATCTACCACGCCATCGACTCCGGCGTCACCTTCCTCGACACCTCCGATGTGTACGGTCCCCACACCAACGAAATGCTCCTCGGCAAGGCTTTGAGTGGAGGGGTGAGAGACAAGGTTGAACTGGCCACCAAATTCGGTATCAGGTTTGTGGACAACAAAATGGCAATTCGAGGTGACCCGGAATATGTGAGAGCTGCTTGTGAAGGAAGCTTGAAACGCCTTGGTGTTGCTTCTGTTGATCTCTATTATCAGCATAGGATTGACACCCGTGTCCCCATTGAAGTCACGGTGGGGGAGCTGAAGAAGCTAATTGAAGAGGGTAAAATAAAGTACATTGGTCTGTCTGAGGCGTCAGCTTCAACAATAAGAAGAGCCCACGCAGTTCATCCAATAACTGCTGTGCAGCTGGAGTGGTCCTTGTGGTCAAGAGACGTAGAGGAAGAAATAATCCCTACTTGTCGGGAACTTGGCATTGGCATTGTTGCATACAGTCCTCTAGGAAGAGGATTCTTATCATCCGGGGCAAATTTCATCGAAAATCTTCCCAATGATGATTTTCGAAAGAATATGCCCAGGTTCCAAGCTGAAAACCTAGAGCATAATAAAACAATATTTGAGCGAGTAAGTGATCTTGCAGCAAGGAAGGGTTGCACCCCATCTCAACTAGCTCTGGCCTGGGTTCATCACCAAGGAAATGATGTGTGCCCTATACCCGGAACCACCAAGATTGAGAATTTTAACCAGAACATTCAGGCTCTGTCTGTGAAACTGACACCAGAAGAAATGGCTGAGCTTGAATCTTTTGCTTCTGCAGATGCTGTTAAGGGCGACAGATATCAGACTGGCTTCAGTACTTGGAGGGACTCTGACACTCCACAACTGTCTTCATGGAAAGCCACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_hydro_28

Protein Analysis

342

Amino Acids

37.76

Weight (kDa)

6.11

Isoelectric Point (pI)

33.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 23 - 310 2.1e-70 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 149, 395
AccB1I GGYRCC 1 cut(s) 92
AcoI YGGCCR 1 cut(s) 249
AcsI RAATTY 3 cut(s) 257, 652, 859
AcuI CTGAAG 2 cut(s) 446, 958
AcyI GRCGYC 3 cut(s) 93, 150, 476
AfaI GTAC 3 cut(s) 179, 458, 979
AfiI CCNNNNNNNGG 2 cut(s) 211, 839
AgsI TTSAA 6 cut(s) 245, 340, 407, 440, 486, 923
AjnI CCWGG 3 cut(s) 39, 698, 800
AjuI GAANNNNNNNTTGG 2 cut(s) 582, 614
Alw26I GTCTC 3 cut(s) 52, 228, 549
AlwNI CAGNNNCTG 2 cut(s) 883, 944
Ama87I CYCGRG 1 cut(s) 26
AoxI GGCC 3 cut(s) 37, 249, 798
ApeKI GCWGC 4 cut(s) 66, 320, 529, 761
ApoI RAATTY 3 cut(s) 257, 652, 859
Asp700I GAANNNNTTC 1 cut(s) 666
AspLEI GCGC 1 cut(s) 95
AspS9I GGNCC 2 cut(s) 182, 540
AsuC2I CCSGG 3 cut(s) 305, 646, 840
AsuHPI GGTGA 4 cut(s) 145, 241, 311, 803
AsuII TTCGAA 1 cut(s) 685
AvaI CYCGRG 1 cut(s) 26
AvaII GGWCC 2 cut(s) 182, 540
BaeGI GKGCMC 1 cut(s) 833
BalI TGGCCA 1 cut(s) 251
BanI GGYRCC 1 cut(s) 92
BanII GRGCYC 1 cut(s) 502
BbsI GAAGAC 1 cut(s) 1002
BbvI GCAGC 4 cut(s) 53, 307, 541, 773
BccI CCATC 2 cut(s) 146, 790
BciT130I CCWGG 3 cut(s) 41, 700, 802
BclI TGATCA 1 cut(s) 117
BcnI CCSGG 3 cut(s) 305, 646, 840
BcoDI GTCTC 3 cut(s) 52, 228, 549
BfaI CTAG 3 cut(s) 623, 719, 791
BfmI CTRYAG 1 cut(s) 936
BfoI RGCGCY 1 cut(s) 96
BisI GCNGC 4 cut(s) 67, 321, 530, 762
BlpI GCTNAGC 1 cut(s) 915
BlsI GCNGC 4 cut(s) 68, 322, 531, 763
BmcAI AGTACT 1 cut(s) 979
Bme1390I CCNGG 6 cut(s) 41, 305, 646, 700, 802, 840
Bme18I GGWCC 2 cut(s) 182, 540
BmeT110I CYCGRG 1 cut(s) 26
BmgT120I GGNCC 2 cut(s) 182, 540
BmiI GGNNCC 4 cut(s) 94, 184, 704, 844
BmrFI CCNGG 6 cut(s) 41, 305, 646, 700, 802, 840
BmrI ACTGGG 1 cut(s) 71
BmsI GCATC 1 cut(s) 931
BmuI ACTGGG 1 cut(s) 71
BpiI GAAGAC 1 cut(s) 1002
BpmI CTGGAG 2 cut(s) 62, 554
Bpu1102I GCTNAGC 1 cut(s) 915
Bpu14I TTCGAA 1 cut(s) 685
BpuEI CTTGAG 1 cut(s) 39
BpuMI CCSGG 3 cut(s) 305, 646, 840
BsaBI GATNNNNATC 1 cut(s) 637
BsaHI GRCGYC 3 cut(s) 93, 150, 476
BsaI GGTCTC 1 cut(s) 52
BsaJI CCNNGG 6 cut(s) 205, 346, 645, 698, 801, 814
Bsc4I CCNNNNNNNGG 2 cut(s) 211, 839
Bse1I ACTGG 3 cut(s) 66, 252, 973
Bse8I GATNNNNATC 1 cut(s) 637
BseBI CCWGG 3 cut(s) 41, 700, 802
BseDI CCNNGG 6 cut(s) 205, 346, 645, 698, 801, 814
BseGI GGATG 3 cut(s) 24, 511, 641
BseJI GATNNNNATC 1 cut(s) 637
BseLI CCNNNNNNNGG 2 cut(s) 211, 839
BseMII CTCAG 3 cut(s) 63, 462, 906
BseNI ACTGG 3 cut(s) 66, 252, 973
BseRI GAGGAG 2 cut(s) 28, 194
BseSI GKGCMC 1 cut(s) 833
BseXI GCAGC 4 cut(s) 53, 307, 541, 773
BsgI GTGCAG 1 cut(s) 548
BshFI GGCC 3 cut(s) 39, 251, 800
BshNI GGYRCC 1 cut(s) 92
BsiHKCI CYCGRG 1 cut(s) 26
BsiSI CCGG 4 cut(s) 147, 305, 645, 840
BslFI GGGAC 3 cut(s) 168, 383, 1001
BslI CCNNNNNNNGG 2 cut(s) 211, 839
BsmAI GTCTC 3 cut(s) 52, 228, 549
BsmBI CGTCTC 1 cut(s) 549
BsmFI GGGAC 3 cut(s) 168, 383, 1001
BsnI GGCC 3 cut(s) 39, 251, 800
Bso31I GGTCTC 1 cut(s) 52
BsoBI CYCGRG 1 cut(s) 26
Bsp119I TTCGAA 1 cut(s) 685
Bsp1286I GDGCHC 2 cut(s) 502, 833
Bsp143I GATC 3 cut(s) 117, 364, 754
Bsp1720I GCTNAGC 1 cut(s) 915
BspANI GGCC 3 cut(s) 39, 251, 800
BspCNI CTCAG 3 cut(s) 62, 463, 907
BspLI GGNNCC 4 cut(s) 94, 184, 704, 844
BspMAI CTGCAG 1 cut(s) 940
BspQI GCTCTTC 1 cut(s) 490
BspT104I TTCGAA 1 cut(s) 685
BspT107I GGYRCC 1 cut(s) 92
BspTNI GGTCTC 1 cut(s) 52
BsrI ACTGG 3 cut(s) 66, 252, 973
BssECI CCNNGG 6 cut(s) 205, 346, 645, 698, 801, 814
BssMI GATC 3 cut(s) 117, 364, 754
BssNI GRCGYC 3 cut(s) 93, 150, 476
BssT1I CCWWGG 2 cut(s) 346, 814
Bst2UI CCWGG 3 cut(s) 41, 700, 802
Bst4CI ACNGT 4 cut(s) 182, 415, 617, 1008
Bst6I CTCTTC 3 cut(s) 435, 490, 622
BstACI GRCGYC 3 cut(s) 93, 150, 476
BstBI TTCGAA 1 cut(s) 685
BstC8I GCNNGC 1 cut(s) 7
BstDEI CTNAG 3 cut(s) 49, 471, 915
BstEII GGTNACC 1 cut(s) 299
BstENI CCTNNNNNAGG 1 cut(s) 209
BstF5I GGATG 3 cut(s) 24, 511, 641
BstH2I RGCGCY 1 cut(s) 96
BstHHI GCGC 1 cut(s) 95
BstKTI GATC 3 cut(s) 120, 367, 757
BstMAI GTCTC 3 cut(s) 52, 228, 549
BstMBI GATC 3 cut(s) 117, 364, 754
BstMWI GCNNNNNNNGC 3 cut(s) 72, 342, 430
BstNI CCWGG 3 cut(s) 41, 700, 802
BstNSI RCATGY 1 cut(s) 79
BstPI GGTNACC 1 cut(s) 299
BstSCI CCNGG 6 cut(s) 39, 303, 644, 698, 800, 838
BstSFI CTRYAG 1 cut(s) 936
BstSLI GKGCMC 1 cut(s) 833
BstV1I GCAGC 4 cut(s) 53, 307, 541, 773
BstV2I GAAGAC 1 cut(s) 1002
BsuRI GGCC 3 cut(s) 39, 251, 800
BtsCI GGATG 3 cut(s) 24, 511, 641
Cac8I GCNNGC 1 cut(s) 7
CaiI CAGNNNCTG 2 cut(s) 883, 944
CfoI GCGC 1 cut(s) 95
Cfr13I GGNCC 2 cut(s) 182, 540
CseI GACGC 2 cut(s) 139, 465
Csp6I GTAC 3 cut(s) 178, 457, 978
CspCI CAANNNNNGTGG 2 cut(s) 835, 870
CviAII CATG 5 cut(s) 10, 70, 76, 115, 1014
CviQI GTAC 3 cut(s) 178, 457, 978
DdeI CTNAG 3 cut(s) 49, 471, 915
DinI GGCGCC 1 cut(s) 94
DpnI GATC 3 cut(s) 119, 366, 756
DpnII GATC 3 cut(s) 117, 364, 754
DrdI GACNNNNNNGTC 2 cut(s) 149, 395
DseDI GACNNNNNNGTC 2 cut(s) 149, 395
EaeI YGGCCR 1 cut(s) 249
Eam1104I CTCTTC 3 cut(s) 435, 490, 622
EarI CTCTTC 3 cut(s) 435, 490, 622
Eco130I CCWWGG 2 cut(s) 346, 814
Eco147I AGGCCT 1 cut(s) 39
Eco24I GRGCYC 1 cut(s) 502
Eco31I GGTCTC 1 cut(s) 52
Eco32I GATATC 1 cut(s) 962
Eco47I GGWCC 2 cut(s) 182, 540
Eco57I CTGAAG 2 cut(s) 446, 958
Eco88I CYCGRG 1 cut(s) 26
Eco91I GGTNACC 1 cut(s) 299
EcoNI CCTNNNNNAGG 1 cut(s) 209
EcoO65I GGTNACC 1 cut(s) 299
EcoRII CCWGG 3 cut(s) 39, 698, 800
EcoRV GATATC 1 cut(s) 962
EcoT14I CCWWGG 2 cut(s) 346, 814
EcoT38I GRGCYC 1 cut(s) 502
EgeI GGCGCC 1 cut(s) 94
EheI GGCGCC 1 cut(s) 94
ErhI CCWWGG 2 cut(s) 346, 814
Esp3I CGTCTC 1 cut(s) 549
FaeI CATG 5 cut(s) 13, 73, 79, 118, 1017
FaqI GGGAC 3 cut(s) 168, 383, 1001
FatI CATG 5 cut(s) 9, 69, 75, 114, 1013
FbaI TGATCA 1 cut(s) 117
Fnu4HI GCNGC 4 cut(s) 67, 321, 530, 762
FokI GGATG 3 cut(s) 31, 498, 628
FriOI GRGCYC 1 cut(s) 502
Fsp4HI GCNGC 4 cut(s) 67, 321, 530, 762
FspBI CTAG 3 cut(s) 623, 719, 791
GlaI GCGC 1 cut(s) 94
GluI GCNGC 4 cut(s) 67, 321, 530, 762
GsuI CTGGAG 2 cut(s) 62, 554
HaeII RGCGCY 1 cut(s) 96
HaeIII GGCC 3 cut(s) 39, 251, 800
HapII CCGG 4 cut(s) 147, 305, 645, 840
HgaI GACGC 2 cut(s) 139, 465
HhaI GCGC 1 cut(s) 95
Hin1I GRCGYC 3 cut(s) 93, 150, 476
Hin1II CATG 5 cut(s) 13, 73, 79, 118, 1017
Hin6I GCGC 1 cut(s) 93
HinP1I GCGC 1 cut(s) 93
HindIII AAGCTT 1 cut(s) 334
HinfI GANTC 4 cut(s) 143, 633, 923, 989
HpaII CCGG 4 cut(s) 147, 305, 645, 840
HphI GGTGA 4 cut(s) 145, 241, 311, 803
Hpy166II GTNNAC 2 cut(s) 178, 277
Hpy188I TCNGA 4 cut(s) 172, 472, 966, 994
Hpy188III TCNNGA 2 cut(s) 552, 587
Hpy8I GTNNAC 2 cut(s) 178, 277
HpyAV CCTTC 4 cut(s) 94, 166, 323, 763
HpyCH4III ACNGT 4 cut(s) 182, 415, 617, 1008
HpyCH4IV ACGT 1 cut(s) 558
HpyCH4V TGCA 6 cut(s) 69, 529, 611, 761, 777, 938
HpyF10VI GCNNNNNNNGC 3 cut(s) 72, 342, 430
HpyF3I CTNAG 3 cut(s) 49, 471, 915
HpySE526I ACGT 1 cut(s) 558
Hsp92I GRCGYC 3 cut(s) 93, 150, 476
Hsp92II CATG 5 cut(s) 13, 73, 79, 118, 1017
HspAI GCGC 1 cut(s) 93
KasI GGCGCC 1 cut(s) 92
Ksp22I TGATCA 1 cut(s) 117
Kzo9I GATC 3 cut(s) 117, 364, 754
LguI GCTCTTC 1 cut(s) 490
LmnI GCTCC 2 cut(s) 207, 421
Lsp1109I GCAGC 4 cut(s) 53, 307, 541, 773
LweI GCATC 1 cut(s) 931
MaeI CTAG 3 cut(s) 623, 719, 791
MaeII ACGT 1 cut(s) 558
MaeIII GTNAC 4 cut(s) 30, 151, 299, 409
MalI GATC 3 cut(s) 119, 366, 756
MboI GATC 3 cut(s) 117, 364, 754
MboII GAAGA 8 cut(s) 439, 452, 507, 578, 639, 659, 917, 1002
MhlI GDGCHC 2 cut(s) 502, 833
MlsI TGGCCA 1 cut(s) 251
MluCI AATT 5 cut(s) 257, 291, 435, 652, 859
MluNI TGGCCA 1 cut(s) 251
Mly113I GGCGCC 1 cut(s) 93
MlyI GAGTC 2 cut(s) 137, 983
Mox20I TGGCCA 1 cut(s) 251
MroXI GAANNNNTTC 1 cut(s) 666
MscI TGGCCA 1 cut(s) 251
MseI TTAA 2 cut(s) 864, 948
MslI CAYNNNNRTG 1 cut(s) 74
Msp20I TGGCCA 1 cut(s) 251
MspA1I CMGCKG 1 cut(s) 532
MspI CCGG 4 cut(s) 147, 305, 645, 840
MspR9I CCNGG 6 cut(s) 41, 305, 646, 700, 802, 840
MvaI CCWGG 3 cut(s) 41, 700, 802
MwoI GCNNNNNNNGC 3 cut(s) 72, 342, 430
NarI GGCGCC 1 cut(s) 93
NciI CCSGG 3 cut(s) 305, 646, 840
NdeII GATC 3 cut(s) 117, 364, 754
NlaIII CATG 5 cut(s) 13, 73, 79, 118, 1017
NlaIV GGNNCC 4 cut(s) 94, 184, 704, 844
NmeAIII GCCGAG 1 cut(s) 186
NmuCI GTSAC 4 cut(s) 30, 151, 299, 409
NspI RCATGY 1 cut(s) 79
NspV TTCGAA 1 cut(s) 685
PceI AGGCCT 1 cut(s) 39
PciSI GCTCTTC 1 cut(s) 490
PcsI WCGNNNNNNNCGW 2 cut(s) 147, 168
PdmI GAANNNNTTC 1 cut(s) 666
PfeI GAWTC 2 cut(s) 633, 923
PkrI GCNGC 4 cut(s) 68, 322, 531, 763
PleI GAGTC 2 cut(s) 137, 983
PluTI GGCGCC 1 cut(s) 96
PpsI GAGTC 2 cut(s) 137, 983
Psp6I CCWGG 3 cut(s) 39, 698, 800
PspEI GGTNACC 1 cut(s) 299
PspGI CCWGG 3 cut(s) 39, 698, 800
PspN4I GGNNCC 4 cut(s) 94, 184, 704, 844
PspPI GGNCC 2 cut(s) 182, 540
PstI CTGCAG 1 cut(s) 940
PstNI CAGNNNCTG 2 cut(s) 883, 944
PvuII CAGCTG 1 cut(s) 532
RsaI GTAC 3 cut(s) 179, 458, 979
RsaNI GTAC 3 cut(s) 178, 457, 978
RseI CAYNNNNRTG 1 cut(s) 74
SapI GCTCTTC 1 cut(s) 490
SaqAI TTAA 2 cut(s) 864, 948
SatI GCNGC 4 cut(s) 67, 321, 530, 762
Sau3AI GATC 3 cut(s) 117, 364, 754
Sau96I GGNCC 2 cut(s) 182, 540
ScaI AGTACT 1 cut(s) 979
SchI GAGTC 2 cut(s) 137, 983
ScrFI CCNGG 6 cut(s) 41, 305, 646, 700, 802, 840
SduI GDGCHC 2 cut(s) 502, 833
SfaNI GCATC 1 cut(s) 931
SfcI CTRYAG 1 cut(s) 936
SfoI GGCGCC 1 cut(s) 94
SfuI TTCGAA 1 cut(s) 685
SinI GGWCC 2 cut(s) 182, 540
SmiMI CAYNNNNRTG 1 cut(s) 74
SmlI CTYRAG 1 cut(s) 54
SmoI CTYRAG 1 cut(s) 54
Sse9I AATT 5 cut(s) 257, 291, 435, 652, 859
SseBI AGGCCT 1 cut(s) 39
SspDI GGCGCC 1 cut(s) 92
SspI AATATT 1 cut(s) 738
SspMI CTAG 3 cut(s) 623, 719, 791
StuI AGGCCT 1 cut(s) 39
StyD4I CCNGG 6 cut(s) 39, 303, 644, 698, 800, 838
StyI CCWWGG 2 cut(s) 346, 814
TaaI ACNGT 4 cut(s) 182, 415, 617, 1008
TaiI ACGT 1 cut(s) 561
TaqI TCGA 5 cut(s) 141, 162, 295, 660, 685
TasI AATT 5 cut(s) 257, 291, 435, 652, 859
TatI WGTACW 2 cut(s) 456, 977
TfiI GAWTC 2 cut(s) 633, 923
Tru1I TTAA 2 cut(s) 864, 948
Tru9I TTAA 2 cut(s) 864, 948
TseFI GTSAC 4 cut(s) 30, 151, 299, 409
TseI GCWGC 4 cut(s) 66, 320, 529, 761
Tsp45I GTSAC 4 cut(s) 30, 151, 299, 409
TspDTI ATGAA 5 cut(s) 35, 500, 646, 797, 1002
VpaK11BI GGWCC 2 cut(s) 182, 540
XagI CCTNNNNNAGG 1 cut(s) 209
XapI RAATTY 3 cut(s) 257, 652, 859
XceI RCATGY 1 cut(s) 79
XmnI GAANNNNTTC 1 cut(s) 666
XspI CTAG 3 cut(s) 623, 719, 791
ZrmI AGTACT 1 cut(s) 979
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.