Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010690

Physical Location & Seq

Genomic Coordinates Forward (+)

20430453 .. 20433146

Gene Structure 2694 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G50180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGGATTCTTTGACTGGATTTAGAATGGAACCCAAATGGCAAATTGATCCTCAGCTTCTCTTTGTTGGTCCAAAGATTGGTGAAGGAGCTCATGCTAAAGTCTATGAGGGAAAATACAAGAATCAGACAGTTGCTATAAAGATAGTTCACAGAGGAGAAACACCAGAAGAGATTGCTAAAAGAGATTCAAGATTCCTTAGAGAAGTAGAAATGCTCTCACGTGTTCAACACAAGAATTTGGTCAAGTTCATTGGTGCTTGCAAGGAGCCTGTAATGGTGATAGTTACAGAACTTCTTCAAGGCGGTACATTGCGTAAATATCTATTAAACTTGAGACCCGCATGTTTGGAGACTCGTGTGGCTATCGGTTTTGCGCTTGATATTGCTCGTGGTATGGAATGCTTGCATTCCCATGGGATCATTCACCGTGATCTCAAACCCGAGAACTTGCTTTTAACTGCAGACCATAAAACAGTAAAACTAGCAGATTTTGGATTAGCAAGAGAAGAGTCACTGACTGAGATGATGACGGCTGAGACAGGAACATACCGATGGATGGCACCTGAGTTGTACAGCACGGTAACTCTTCGATTGGGAGAGAAGAAGCACTACAATCATAAAGTCGACGCCTATAGCTTTGCAATAGTTCTTTGGGAGCTTTTACACAATAAATTGCCTTTTGAGGGAATGTCAAATCTCCAAGCAGCATATGCAGCAGCCTTCAAAAATGTGAGACCAAGCGCGGAGAGCTTACCGGAGGAGTTGGGCGACATTGTAACATCATGTTGGAATGAGGATCCGAATGCTCGGCCCAACTTCACGCATATCATTGAGTTACTTCTTAACTATCTCTCTAAAGTTGGATCTCCGATATCCGCTATTCCACAACGGATTCTTGCTTCGAAGAACACGCTATTGCCACCGGATTCTCCTGGAACTAGCTCTTTGATGGCTAAGCTTGATGAATGTGGGGAAACTCCAAAGGCCAAAAGTGAAGACAAACGAAAAGGTTTGTTTTTCTGCTTCAATCAATGTTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

346

Amino Acids

38.97

Weight (kDa)

8.08

Isoelectric Point (pI)

48.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	24 - 279	1.3e-58	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	24 - 277	2.5e-54	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010690)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50180
fragaria_vesca	FvH4_5g06280 FvH4_5g06280 FvH4_5g06280 FvH4_5g06280
malus_domestica	MD06G1165800.v1.1 MD14G1171600.v1.1
prunus_persica	Prupe.5G165700_v2.0.a1 Prupe.5G165700_v2.0.a1
pyrus_communis	pycom06g14830 pycom14g14330
rosa_chinensis	RchiOBHm_Chr7g0192581
rosa_laevigata	RLG00000004350
rosa_rugosa	Rorug07G0002300 Rorug07G0002400
rosa_samantha	Rh7AG126800 Rh7BG129000 Rh7CG130900 Rh7DG130200
rosa_wichuraiana	Rw7G010900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	559
AccB7I	CCANNNNNTGG	1 cut(s)	77
AccI	GTMKAC	1 cut(s)	624
AccII	CGCG	1 cut(s)	743
AciI	CCGC	4 cut(s)	303, 339, 743, 876
AclWI	GGATC	5 cut(s)	41, 425, 791, 804, 871
AcsI	RAATTY	1 cut(s)	235
AcvI	CACGTG	1 cut(s)	221
AcyI	GRCGYC	1 cut(s)	627
AfaI	GTAC	2 cut(s)	307, 572
AfiI	CCNNNNNNNGG	3 cut(s)	77, 556, 683
AflIII	ACRYGT	1 cut(s)	220
AgsI	TTSAA	5 cut(s)	189, 227, 299, 724, 1027
AjnI	CCWGG	1 cut(s)	931
AluBI	AGCT	7 cut(s)	55, 89, 636, 658, 750, 942, 958
AluI	AGCT	7 cut(s)	55, 89, 636, 658, 750, 942, 958
Alw21I	GWGCWC	1 cut(s)	91
Alw26I	GTCTC	4 cut(s)	328, 344, 530, 727
AlwI	GGATC	5 cut(s)	41, 425, 791, 804, 871
Ama87I	CYCGRG	1 cut(s)	440
AoxI	GGCC	2 cut(s)	809, 984
ApeKI	GCWGC	3 cut(s)	704, 713, 716
ApoI	RAATTY	1 cut(s)	235
Asp700I	GAANNNNTTC	1 cut(s)	294
AspLEI	GCGC	2 cut(s)	376, 743
AspS9I	GGNCC	2 cut(s)	68, 810
AsuHPI	GGTGA	3 cut(s)	92, 289, 416
AsuII	TTCGAA	1 cut(s)	902
AvaI	CYCGRG	1 cut(s)	440
AvaII	GGWCC	1 cut(s)	68
BamHI	GGATCC	1 cut(s)	796
BanI	GGYRCC	1 cut(s)	559
BanII	GRGCYC	1 cut(s)	91
BarI	GAAGNNNNNNTAC	2 cut(s)	593, 625
BauI	CACGAG	2 cut(s)	354, 387
BbrPI	CACGTG	1 cut(s)	221
BbsI	GAAGAC	1 cut(s)	1002
Bbv12I	GWGCWC	1 cut(s)	91
BbvCI	CCTCAGC	1 cut(s)	51
BbvI	GCAGC	3 cut(s)	716, 725, 728
BccI	CCATC	3 cut(s)	546, 550, 943
BceAI	ACGGC	1 cut(s)	546
BciT130I	CCWGG	1 cut(s)	933
BcoDI	GTCTC	4 cut(s)	328, 344, 530, 727
BfaI	CTAG	2 cut(s)	482, 939
BfmI	CTRYAG	2 cut(s)	459, 631
BisI	GCNGC	3 cut(s)	705, 714, 717
BlpI	GCTNAGC	1 cut(s)	954
BlsI	GCNGC	3 cut(s)	706, 715, 718
Bme1390I	CCNGG	1 cut(s)	933
Bme18I	GGWCC	1 cut(s)	68
BmeT110I	CYCGRG	1 cut(s)	440
BmgT120I	GGNCC	2 cut(s)	68, 810
BmiI	GGNNCC	4 cut(s)	30, 267, 561, 798
BmrFI	CCNGG	1 cut(s)	933
BpiI	GAAGAC	1 cut(s)	1002
Bpu10I	CCTNAGC	1 cut(s)	51
Bpu1102I	GCTNAGC	1 cut(s)	954
Bpu14I	TTCGAA	1 cut(s)	902
BpuEI	CTTGAG	1 cut(s)	352
BsaAI	YACGTR	1 cut(s)	221
BsaHI	GRCGYC	1 cut(s)	627
BsaI	GGTCTC	2 cut(s)	328, 727
BsaJI	CCNNGG	1 cut(s)	412
BsaWI	WCCGGW	2 cut(s)	754, 922
Bsc4I	CCNNNNNNNGG	3 cut(s)	77, 556, 683
Bse1I	ACTGG	1 cut(s)	19
Bse3DI	GCAATG	1 cut(s)	308
BseBI	CCWGG	1 cut(s)	933
BseDI	CCNNGG	1 cut(s)	412
BseGI	GGATG	1 cut(s)	561
BseLI	CCNNNNNNNGG	3 cut(s)	77, 556, 683
BseMI	GCAATG	1 cut(s)	308
BseMII	CTCAG	4 cut(s)	65, 510, 525, 555
BseNI	ACTGG	1 cut(s)	19
BseRI	GAGGAG	2 cut(s)	168, 773
BseXI	GCAGC	3 cut(s)	716, 725, 728
Bsh1236I	CGCG	1 cut(s)	743
BshFI	GGCC	2 cut(s)	811, 986
BshNI	GGYRCC	1 cut(s)	559
BsiHKAI	GWGCWC	1 cut(s)	91
BsiHKCI	CYCGRG	1 cut(s)	440
BsiSI	CCGG	2 cut(s)	755, 923
BslI	CCNNNNNNNGG	3 cut(s)	77, 556, 683
BsmAI	GTCTC	4 cut(s)	328, 344, 530, 727
BsmI	GAATGC	3 cut(s)	404, 406, 808
BsnI	GGCC	2 cut(s)	811, 986
Bso31I	GGTCTC	2 cut(s)	328, 727
BsoBI	CYCGRG	1 cut(s)	440
Bsp119I	TTCGAA	1 cut(s)	902
Bsp1286I	GDGCHC	1 cut(s)	91
Bsp1407I	TGTACA	1 cut(s)	570
Bsp143I	GATC	5 cut(s)	46, 417, 430, 796, 863
Bsp1720I	GCTNAGC	1 cut(s)	954
Bsp19I	CCATGG	1 cut(s)	412
BspACI	CCGC	4 cut(s)	303, 339, 743, 876
BspANI	GGCC	2 cut(s)	811, 986
BspCNI	CTCAG	4 cut(s)	64, 511, 526, 556
BspFNI	CGCG	1 cut(s)	743
BspLI	GGNNCC	4 cut(s)	30, 267, 561, 798
BspMAI	CTGCAG	1 cut(s)	463
BspPI	GGATC	5 cut(s)	41, 425, 791, 804, 871
BspT104I	TTCGAA	1 cut(s)	902
BspT107I	GGYRCC	1 cut(s)	559
BspTNI	GGTCTC	2 cut(s)	328, 727
BsrDI	GCAATG	1 cut(s)	308
BsrGI	TGTACA	1 cut(s)	570
BsrI	ACTGG	1 cut(s)	19
BssECI	CCNNGG	1 cut(s)	412
BssMI	GATC	5 cut(s)	46, 417, 430, 796, 863
BssNI	GRCGYC	1 cut(s)	627
BssSI	CACGAG	2 cut(s)	354, 387
BssT1I	CCWWGG	1 cut(s)	412
Bst2BI	CACGAG	2 cut(s)	354, 387
Bst2UI	CCWGG	1 cut(s)	933
Bst4CI	ACNGT	4 cut(s)	130, 428, 475, 580
Bst6I	CTCTTC	3 cut(s)	162, 501, 591
BstACI	GRCGYC	1 cut(s)	627
BstAPI	GCANNNNNTGC	1 cut(s)	710
BstAUI	TGTACA	1 cut(s)	570
BstBAI	YACGTR	1 cut(s)	221
BstBI	TTCGAA	1 cut(s)	902
BstC8I	GCNNGC	2 cut(s)	259, 404
BstDEI	CTNAG	6 cut(s)	51, 197, 519, 534, 564, 954
BstDSI	CCRYGG	1 cut(s)	412
BstF5I	GGATG	1 cut(s)	561
BstFNI	CGCG	1 cut(s)	743
BstHHI	GCGC	2 cut(s)	376, 743
BstKTI	GATC	5 cut(s)	49, 420, 433, 799, 866
BstMAI	GTCTC	4 cut(s)	328, 344, 530, 727
BstMBI	GATC	5 cut(s)	46, 417, 430, 796, 863
BstMWI	GCNNNNNNNGC	3 cut(s)	710, 713, 747
BstNI	CCWGG	1 cut(s)	933
BstNSI	RCATGY	1 cut(s)	345
BstSCI	CCNGG	1 cut(s)	931
BstSFI	CTRYAG	2 cut(s)	459, 631
BstUI	CGCG	1 cut(s)	743
BstV1I	GCAGC	3 cut(s)	716, 725, 728
BstV2I	GAAGAC	1 cut(s)	1002
BstX2I	RGATCY	2 cut(s)	796, 863
BstYI	RGATCY	2 cut(s)	796, 863
BsuRI	GGCC	2 cut(s)	811, 986
BtgI	CCRYGG	1 cut(s)	412
BtsCI	GGATG	1 cut(s)	561
BtsIMutI	CAGTG	1 cut(s)	512
Cac8I	GCNNGC	2 cut(s)	259, 404
CfoI	GCGC	2 cut(s)	376, 743
Cfr13I	GGNCC	2 cut(s)	68, 810
CseI	GACGC	1 cut(s)	635
Csp6I	GTAC	2 cut(s)	306, 571
CviAII	CATG	4 cut(s)	92, 342, 413, 783
CviQI	GTAC	2 cut(s)	306, 571
DdeI	CTNAG	6 cut(s)	51, 197, 519, 534, 564, 954
DpnI	GATC	5 cut(s)	48, 419, 432, 798, 865
DpnII	GATC	5 cut(s)	46, 417, 430, 796, 863
Eam1104I	CTCTTC	3 cut(s)	162, 501, 591
EarI	CTCTTC	3 cut(s)	162, 501, 591
Ecl136II	GAGCTC	1 cut(s)	89
Eco130I	CCWWGG	1 cut(s)	412
Eco24I	GRGCYC	1 cut(s)	91
Eco31I	GGTCTC	2 cut(s)	328, 727
Eco32I	GATATC	1 cut(s)	873
Eco47I	GGWCC	1 cut(s)	68
Eco53kI	GAGCTC	1 cut(s)	89
Eco72I	CACGTG	1 cut(s)	221
Eco88I	CYCGRG	1 cut(s)	440
EcoICRI	GAGCTC	1 cut(s)	89
EcoRII	CCWGG	1 cut(s)	931
EcoRV	GATATC	1 cut(s)	873
EcoT14I	CCWWGG	1 cut(s)	412
EcoT38I	GRGCYC	1 cut(s)	91
ErhI	CCWWGG	1 cut(s)	412
FaeI	CATG	4 cut(s)	95, 345, 416, 786
FatI	CATG	4 cut(s)	91, 341, 412, 782
FauI	CCCGC	1 cut(s)	346
FauNDI	CATATG	1 cut(s)	709
FblI	GTMKAC	1 cut(s)	624
Fnu4HI	GCNGC	3 cut(s)	705, 714, 717
FokI	GGATG	1 cut(s)	568
FriOI	GRGCYC	1 cut(s)	91
Fsp4HI	GCNGC	3 cut(s)	705, 714, 717
FspBI	CTAG	2 cut(s)	482, 939
GlaI	GCGC	2 cut(s)	375, 742
GluI	GCNGC	3 cut(s)	705, 714, 717
HaeIII	GGCC	2 cut(s)	811, 986
HapII	CCGG	2 cut(s)	755, 923
HgaI	GACGC	1 cut(s)	635
HhaI	GCGC	2 cut(s)	376, 743
Hin1I	GRCGYC	1 cut(s)	627
Hin1II	CATG	4 cut(s)	95, 345, 416, 786
Hin6I	GCGC	2 cut(s)	374, 741
HinP1I	GCGC	2 cut(s)	374, 741
HincII	GTYRAC	1 cut(s)	625
HindII	GTYRAC	1 cut(s)	625
HindIII	AAGCTT	1 cut(s)	956
HinfI	GANTC	8 cut(s)	5, 121, 185, 192, 352, 509, 892, 926
HpaII	CCGG	2 cut(s)	755, 923
HphI	GGTGA	3 cut(s)	92, 289, 416
Hpy166II	GTNNAC	2 cut(s)	148, 625
Hpy188I	TCNGA	3 cut(s)	126, 801, 870
Hpy188III	TCNNGA	1 cut(s)	189
Hpy8I	GTNNAC	2 cut(s)	148, 625
Hpy99I	CGWCG	1 cut(s)	629
HpyAV	CCTTC	2 cut(s)	77, 730
HpyCH4III	ACNGT	4 cut(s)	130, 428, 475, 580
HpyCH4IV	ACGT	1 cut(s)	220
HpyCH4V	TGCA	5 cut(s)	261, 406, 461, 641, 713
HpyF10VI	GCNNNNNNNGC	3 cut(s)	710, 713, 747
HpyF3I	CTNAG	6 cut(s)	51, 197, 519, 534, 564, 954
HpySE526I	ACGT	1 cut(s)	220
Hsp92I	GRCGYC	1 cut(s)	627
Hsp92II	CATG	4 cut(s)	95, 345, 416, 786
HspAI	GCGC	2 cut(s)	374, 741
Kzo9I	GATC	5 cut(s)	46, 417, 430, 796, 863
LmnI	GCTCC	3 cut(s)	86, 265, 655
LpnPI	CCDG	8 cut(s)	177, 282, 525, 576, 768, 918, 936, 945
Lsp1109I	GCAGC	3 cut(s)	716, 725, 728
MaeI	CTAG	2 cut(s)	482, 939
MaeII	ACGT	1 cut(s)	220
MaeIII	GTNAC	5 cut(s)	283, 510, 580, 775, 834
MalI	GATC	5 cut(s)	48, 419, 432, 798, 865
MboI	GATC	5 cut(s)	46, 417, 430, 796, 863
MboII	GAAGA	7 cut(s)	179, 287, 518, 578, 613, 916, 1007
MflI	RGATCY	2 cut(s)	796, 863
MhlI	GDGCHC	1 cut(s)	91
MluCI	AATT	3 cut(s)	42, 235, 671
MlyI	GAGTC	2 cut(s)	346, 518
MmeI	TCCRAC	2 cut(s)	767, 841
MnlI	CCTC	6 cut(s)	60, 100, 146, 676, 751, 787
MroXI	GAANNNNTTC	1 cut(s)	294
MseI	TTAA	4 cut(s)	326, 455, 843, 1039
MslI	CAYNNNNRTG	2 cut(s)	411, 550
MspI	CCGG	2 cut(s)	755, 923
MspR9I	CCNGG	1 cut(s)	933
Mva1269I	GAATGC	3 cut(s)	404, 406, 808
MvaI	CCWGG	1 cut(s)	933
MvnI	CGCG	1 cut(s)	743
MwoI	GCNNNNNNNGC	3 cut(s)	710, 713, 747
NcoI	CCATGG	1 cut(s)	412
NdeI	CATATG	1 cut(s)	709
NdeII	GATC	5 cut(s)	46, 417, 430, 796, 863
NlaIII	CATG	4 cut(s)	95, 345, 416, 786
NlaIV	GGNNCC	4 cut(s)	30, 267, 561, 798
NmeAIII	GCCGAG	1 cut(s)	787
NmuCI	GTSAC	1 cut(s)	510
NspI	RCATGY	1 cut(s)	345
NspV	TTCGAA	1 cut(s)	902
PctI	GAATGC	3 cut(s)	404, 406, 808
PdmI	GAANNNNTTC	1 cut(s)	294
PfeI	GAWTC	6 cut(s)	5, 121, 185, 192, 892, 926
PflMI	CCANNNNNTGG	1 cut(s)	77
PfoI	TCCNGGA	1 cut(s)	931
PkrI	GCNGC	3 cut(s)	706, 715, 718
PleI	GAGTC	2 cut(s)	346, 517
PmaCI	CACGTG	1 cut(s)	221
PmlI	CACGTG	1 cut(s)	221
PpsI	GAGTC	2 cut(s)	346, 517
Ppu21I	YACGTR	1 cut(s)	221
Psp124BI	GAGCTC	1 cut(s)	91
Psp6I	CCWGG	1 cut(s)	931
PspCI	CACGTG	1 cut(s)	221
PspGI	CCWGG	1 cut(s)	931
PspN4I	GGNNCC	4 cut(s)	30, 267, 561, 798
PspPI	GGNCC	2 cut(s)	68, 810
PstI	CTGCAG	1 cut(s)	463
PsuI	RGATCY	2 cut(s)	796, 863
RsaI	GTAC	2 cut(s)	307, 572
RsaNI	GTAC	2 cut(s)	306, 571
RseI	CAYNNNNRTG	2 cut(s)	411, 550
SacI	GAGCTC	1 cut(s)	91
SalI	GTCGAC	1 cut(s)	623
SaqAI	TTAA	4 cut(s)	326, 455, 843, 1039
SatI	GCNGC	3 cut(s)	705, 714, 717
Sau3AI	GATC	5 cut(s)	46, 417, 430, 796, 863
Sau96I	GGNCC	2 cut(s)	68, 810
SchI	GAGTC	2 cut(s)	346, 518
ScrFI	CCNGG	1 cut(s)	933
SduI	GDGCHC	1 cut(s)	91
SfcI	CTRYAG	2 cut(s)	459, 631
SfuI	TTCGAA	1 cut(s)	902
SinI	GGWCC	1 cut(s)	68
SmiMI	CAYNNNNRTG	2 cut(s)	411, 550
SmlI	CTYRAG	1 cut(s)	331
SmoI	CTYRAG	1 cut(s)	331
Sse9I	AATT	3 cut(s)	42, 235, 671
SsiI	CCGC	4 cut(s)	303, 339, 743, 876
SspMI	CTAG	2 cut(s)	482, 939
SstI	GAGCTC	1 cut(s)	91
StyD4I	CCNGG	1 cut(s)	931
StyI	CCWWGG	1 cut(s)	412
TaaI	ACNGT	4 cut(s)	130, 428, 475, 580
TaiI	ACGT	1 cut(s)	223
TaqI	TCGA	3 cut(s)	589, 624, 902
TasI	AATT	3 cut(s)	42, 235, 671
TatI	WGTACW	1 cut(s)	570
TfiI	GAWTC	6 cut(s)	5, 121, 185, 192, 892, 926
Tru1I	TTAA	4 cut(s)	326, 455, 843, 1039
Tru9I	TTAA	4 cut(s)	326, 455, 843, 1039
TscAI	CASTG	1 cut(s)	519
TseFI	GTSAC	1 cut(s)	510
TseI	GCWGC	3 cut(s)	704, 713, 716
Tsp45I	GTSAC	1 cut(s)	510
TspDTI	ATGAA	2 cut(s)	238, 978
TspGWI	ACGGA	1 cut(s)	904
TspRI	CASTG	1 cut(s)	519
Van91I	CCANNNNNTGG	1 cut(s)	77
VpaK11BI	GGWCC	1 cut(s)	68
XapI	RAATTY	1 cut(s)	235
XceI	RCATGY	1 cut(s)	345
XmiI	GTMKAC	1 cut(s)	624
XmnI	GAANNNNTTC	1 cut(s)	294
XspI	CTAG	2 cut(s)	482, 939

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.