Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0010690

Physical Location & Seq

Genomic Coordinates Reverse (-)

11001790 .. 11005236

Gene Structure 3447 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ17215

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

ATGTGGGGTTCCATGCTTTTGCCTCCTCCAAAAACATCATCATCTGAATTCATTCCATTTTGTAGAAAGATGGAATCTGGGAGTAGGTTTTACTCTGGTGATGAGTTCAGATTGGATTCCAAATGGCTGGTTGATCCTAAGCATCTGTTTGTTGGGCCAAGAATTGGAGAGGGTGCTCATGCCAAAGTGTATGAGGGCAAATACAAAAACCAGACTGTTGCAATTAAAGTTCTACATAAAGGAGAAACTCCAGAAGAGATCACCAAGAGACAAGGGCGGTTTGCCAGAGAGGTTGAAATGTTGTCTAGAGTTCAGCATAAGAATTTAGTGAAGTTTATTGGTGCCTGCATGGAGCCAGTAATGGTGATAGTTACTGAGCTTTTATTGGGTGGGACATTGCGCAAGTATTGTCTTAACATGCGGCCAAGGTGCTTGGACACACGAGTTGCTGTTGGTTTTGCCCTAGATATTGCTCGTGCAATGGAATGCTTACACTCTCATGGGATCATACACCGTGACTTGAAGCCTGAGAACTTGCTCTTGACTGCAGACCACAAAACTGTTAAACTAGCAGATTTTGGGTTAGCAAGAGAAGAGTCATTAACAGAGATGATGACTGCCGAAACTGGAACATACCGTTGGATGGCCCCAGAGTTGTACAGTACTGTTACGTTAAGGCAGGGAGAGAAGAAGCATTACAACCATAAAGTGGATGCCTATAGCTTTGCAATTGTTTTGTGGGAACTCTTACACAATAAATTGCCTTTTGAAGGCATGTCAAATCTCCAGGCAGCATATGCAGCAGCTTTTAAAAATGTGAGGCCCAGTGCTGACAACCTCCCAGAGGAGTTGAATCTCATCCTAACTTCGTGCTGGCAGGAGGACGCAAATGCTCGACCTAATTTCAGTCAGATAATTCAAATGCTACTAGATTATCTTTACACCATAGCTCCTCCTGAACCTGCGATTCCTTCTCGGATTTTCACCGAGAACACTGTCTTGCCTCCTGAGTCCCCTGGTACAAGCTCTTTGATGGCAGTACGTGATGATGGGGGGACACCCAAAGCACAAACGGAAGATGAGCCAAAAGGATTTTTCTTCTGCTTTAAACAGTGCTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

373

Amino Acids

42.28

Weight (kDa)

7.16

Isoelectric Point (pI)

49.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	53 - 308	1e-51	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	54 - 309	2.5e-57	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010690)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50180
fragaria_vesca	FvH4_5g06280 FvH4_5g06280 FvH4_5g06280 FvH4_5g06280
malus_domestica	MD06G1165800.v1.1 MD14G1171600.v1.1
prunus_persica	Prupe.5G165700_v2.0.a1 Prupe.5G165700_v2.0.a1
pyrus_communis	pycom06g14830 pycom14g14330
rosa_chinensis	RchiOBHm_Chr7g0192581
rosa_laevigata	RLG00000004350
rosa_rugosa	Rorug07G0002300 Rorug07G0002400
rosa_samantha	Rh7AG126800 Rh7BG129000 Rh7CG130900 Rh7DG130200
rosa_wichuraiana	Rw7G010900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	401
Acc36I	ACCTGC	1 cut(s)	970
AccB1I	GGYRCC	1 cut(s)	341
AccB7I	CCANNNNNTGG	2 cut(s)	164, 709
AciI	CCGC	2 cut(s)	277, 421
AclWI	GGATC	2 cut(s)	128, 512
AcoI	YGGCCR	1 cut(s)	422
AcsI	RAATTY	2 cut(s)	47, 322
AfaI	GTAC	4 cut(s)	659, 664, 1021, 1041
AfiI	CCNNNNNNNGG	5 cut(s)	164, 643, 709, 770, 844
AgsI	TTSAA	5 cut(s)	296, 523, 770, 853, 920
AjnI	CCWGG	2 cut(s)	786, 1015
AjuI	GAANNNNNNNTTGG	2 cut(s)	622, 654
AluBI	AGCT	5 cut(s)	379, 723, 806, 950, 1026
AluI	AGCT	5 cut(s)	379, 723, 806, 950, 1026
Alw21I	GWGCWC	1 cut(s)	178
Alw26I	GTCTC	1 cut(s)	262
AlwI	GGATC	2 cut(s)	128, 512
AoxI	GGCC	4 cut(s)	155, 422, 645, 821
ApeKI	GCWGC	3 cut(s)	791, 800, 803
ApoI	RAATTY	2 cut(s)	47, 322
Asp700I	GAANNNNTTC	1 cut(s)	51
AspLEI	GCGC	1 cut(s)	402
AspS9I	GGNCC	3 cut(s)	155, 646, 822
AsuHPI	GGTGA	4 cut(s)	110, 253, 376, 976
BanI	GGYRCC	1 cut(s)	341
BarI	GAAGNNNNNNTAC	2 cut(s)	680, 712
BauI	CACGAG	2 cut(s)	441, 474
Bbv12I	GWGCWC	1 cut(s)	178
BbvI	GCAGC	3 cut(s)	803, 812, 815
BccI	CCATC	4 cut(s)	64, 637, 1027, 1043
BciT130I	CCWGG	2 cut(s)	788, 1017
BcoDI	GTCTC	1 cut(s)	262
BfaI	CTAG	4 cut(s)	306, 464, 569, 929
BfmI	CTRYAG	2 cut(s)	546, 718
BfuAI	ACCTGC	1 cut(s)	970
BisI	GCNGC	4 cut(s)	422, 792, 801, 804
BlsI	GCNGC	4 cut(s)	423, 793, 802, 805
BmcAI	AGTACT	1 cut(s)	664
Bme1390I	CCNGG	2 cut(s)	788, 1017
BmgT120I	GGNCC	3 cut(s)	155, 646, 822
BmiI	GGNNCC	4 cut(s)	10, 343, 354, 648
BmrFI	CCNGG	2 cut(s)	788, 1017
BmrI	ACTGGG	1 cut(s)	819
BmsI	GCATC	2 cut(s)	151, 703
BmuI	ACTGGG	1 cut(s)	819
BpmI	CTGGAG	2 cut(s)	234, 770
Bpu10I	CCTNAGC	1 cut(s)	138
BsaAI	YACGTR	1 cut(s)	1043
BsaJI	CCNNGG	2 cut(s)	425, 1015
BsaXI	ACNNNNNCTCC	2 cut(s)	934, 964
Bsc4I	CCNNNNNNNGG	5 cut(s)	164, 643, 709, 770, 844
Bse1I	ACTGG	3 cut(s)	356, 631, 825
Bse3DI	GCAATG	2 cut(s)	395, 486
BseBI	CCWGG	2 cut(s)	788, 1017
BseDI	CCNNGG	2 cut(s)	425, 1015
BseGI	GGATG	3 cut(s)	648, 718, 858
BseLI	CCNNNNNNNGG	5 cut(s)	164, 643, 709, 770, 844
BseMI	GCAATG	2 cut(s)	395, 486
BseMII	CTCAG	3 cut(s)	366, 519, 999
BseNI	ACTGG	3 cut(s)	356, 631, 825
BseRI	GAGGAG	3 cut(s)	15, 860, 942
BseXI	GCAGC	3 cut(s)	803, 812, 815
BshFI	GGCC	4 cut(s)	157, 424, 647, 823
BshNI	GGYRCC	1 cut(s)	341
BsiHKAI	GWGCWC	1 cut(s)	178
BslFI	GGGAC	3 cut(s)	406, 997, 1069
BslI	CCNNNNNNNGG	5 cut(s)	164, 643, 709, 770, 844
BsmAI	GTCTC	1 cut(s)	262
BsmFI	GGGAC	3 cut(s)	406, 997, 1069
BsmI	GAATGC	1 cut(s)	491
BsnI	GGCC	4 cut(s)	157, 424, 647, 823
Bsp1286I	GDGCHC	1 cut(s)	178
Bsp1407I	TGTACA	1 cut(s)	657
Bsp143I	GATC	3 cut(s)	133, 258, 504
BspACI	CCGC	2 cut(s)	277, 421
BspANI	GGCC	4 cut(s)	157, 424, 647, 823
BspCNI	CTCAG	3 cut(s)	367, 520, 1000
BspLI	GGNNCC	4 cut(s)	10, 343, 354, 648
BspMAI	CTGCAG	1 cut(s)	550
BspMI	ACCTGC	1 cut(s)	970
BspPI	GGATC	2 cut(s)	128, 512
BspT107I	GGYRCC	1 cut(s)	341
BsrDI	GCAATG	2 cut(s)	395, 486
BsrGI	TGTACA	1 cut(s)	657
BsrI	ACTGG	3 cut(s)	356, 631, 825
BssECI	CCNNGG	2 cut(s)	425, 1015
BssMI	GATC	3 cut(s)	133, 258, 504
BssSI	CACGAG	2 cut(s)	441, 474
BssT1I	CCWWGG	1 cut(s)	425
Bst2BI	CACGAG	2 cut(s)	441, 474
Bst2UI	CCWGG	2 cut(s)	788, 1017
Bst4CI	ACNGT	8 cut(s)	217, 515, 562, 638, 662, 667, 997, 1113
Bst6I	CTCTTC	2 cut(s)	249, 588
BstAPI	GCANNNNNTGC	1 cut(s)	797
BstAUI	TGTACA	1 cut(s)	657
BstBAI	YACGTR	1 cut(s)	1043
BstC8I	GCNNGC	2 cut(s)	346, 875
BstDEI	CTNAG	4 cut(s)	138, 375, 528, 1008
BstENI	CCTNNNNNAGG	2 cut(s)	768, 842
BstF5I	GGATG	3 cut(s)	648, 718, 858
BstHHI	GCGC	1 cut(s)	402
BstKTI	GATC	3 cut(s)	136, 261, 507
BstMAI	GTCTC	1 cut(s)	262
BstMBI	GATC	3 cut(s)	133, 258, 504
BstMWI	GCNNNNNNNGC	2 cut(s)	797, 800
BstNI	CCWGG	2 cut(s)	788, 1017
BstNSI	RCATGY	2 cut(s)	421, 778
BstSCI	CCNGG	2 cut(s)	786, 1015
BstSFI	CTRYAG	2 cut(s)	546, 718
BstV1I	GCAGC	3 cut(s)	803, 812, 815
BstXI	CCANNNNNNTGG	1 cut(s)	127
BsuRI	GGCC	4 cut(s)	157, 424, 647, 823
BtsCI	GGATG	3 cut(s)	648, 718, 858
BtsIMutI	CAGTG	3 cut(s)	832, 993, 1118
BveI	ACCTGC	1 cut(s)	970
Cac8I	GCNNGC	2 cut(s)	346, 875
CfoI	GCGC	1 cut(s)	402
Cfr13I	GGNCC	3 cut(s)	155, 646, 822
CseI	GACGC	1 cut(s)	893
Csp6I	GTAC	4 cut(s)	658, 663, 1020, 1040
CviAII	CATG	6 cut(s)	13, 179, 349, 418, 500, 775
CviQI	GTAC	4 cut(s)	658, 663, 1020, 1040
DdeI	CTNAG	4 cut(s)	138, 375, 528, 1008
DpnI	GATC	3 cut(s)	135, 260, 506
DpnII	GATC	3 cut(s)	133, 258, 504
DraI	TTTAAA	2 cut(s)	811, 1108
EaeI	YGGCCR	1 cut(s)	422
Eam1104I	CTCTTC	2 cut(s)	249, 588
EarI	CTCTTC	2 cut(s)	249, 588
Eco130I	CCWWGG	1 cut(s)	425
EcoNI	CCTNNNNNAGG	2 cut(s)	768, 842
EcoRI	GAATTC	1 cut(s)	47
EcoRII	CCWGG	2 cut(s)	786, 1015
EcoT14I	CCWWGG	1 cut(s)	425
ErhI	CCWWGG	1 cut(s)	425
FaeI	CATG	6 cut(s)	16, 182, 352, 421, 503, 778
FaqI	GGGAC	3 cut(s)	406, 997, 1069
FatI	CATG	6 cut(s)	12, 178, 348, 417, 499, 774
FauNDI	CATATG	1 cut(s)	796
Fnu4HI	GCNGC	4 cut(s)	422, 792, 801, 804
FokI	GGATG	3 cut(s)	655, 725, 845
Fsp4HI	GCNGC	4 cut(s)	422, 792, 801, 804
FspBI	CTAG	4 cut(s)	306, 464, 569, 929
FspI	TGCGCA	1 cut(s)	401
GlaI	GCGC	1 cut(s)	401
GluI	GCNGC	4 cut(s)	422, 792, 801, 804
GsuI	CTGGAG	2 cut(s)	234, 770
HaeIII	GGCC	4 cut(s)	157, 424, 647, 823
HgaI	GACGC	1 cut(s)	893
HhaI	GCGC	1 cut(s)	402
Hin1II	CATG	6 cut(s)	16, 182, 352, 421, 503, 778
Hin6I	GCGC	1 cut(s)	400
HinP1I	GCGC	1 cut(s)	400
HinfI	GANTC	6 cut(s)	74, 116, 596, 853, 967, 1010
HphI	GGTGA	4 cut(s)	110, 253, 376, 976
Hpy188I	TCNGA	4 cut(s)	46, 110, 912, 978
Hpy188III	TCNNGA	5 cut(s)	251, 306, 541, 956, 1007
HpyAV	CCTTC	2 cut(s)	764, 981
HpyCH4III	ACNGT	8 cut(s)	217, 515, 562, 638, 662, 667, 997, 1113
HpyCH4IV	ACGT	2 cut(s)	671, 1042
HpyCH4V	TGCA	6 cut(s)	221, 348, 479, 548, 728, 800
HpyF10VI	GCNNNNNNNGC	2 cut(s)	797, 800
HpyF3I	CTNAG	4 cut(s)	138, 375, 528, 1008
HpySE526I	ACGT	2 cut(s)	671, 1042
Hsp92II	CATG	6 cut(s)	16, 182, 352, 421, 503, 778
HspAI	GCGC	1 cut(s)	400
Kzo9I	GATC	3 cut(s)	133, 258, 504
LmnI	GCTCC	2 cut(s)	352, 955
Lsp1109I	GCAGC	3 cut(s)	803, 812, 815
LweI	GCATC	2 cut(s)	151, 703
MaeI	CTAG	4 cut(s)	306, 464, 569, 929
MaeII	ACGT	2 cut(s)	671, 1042
MaeIII	GTNAC	3 cut(s)	370, 515, 667
MalI	GATC	3 cut(s)	135, 260, 506
MboI	GATC	3 cut(s)	133, 258, 504
MboII	GAAGA	5 cut(s)	266, 605, 700, 1088, 1090
MfeI	CAATTG	1 cut(s)	729
MhlI	GDGCHC	1 cut(s)	178
MluCI	AATT	8 cut(s)	47, 162, 222, 322, 729, 758, 901, 915
MlyI	GAGTC	2 cut(s)	605, 1019
MmeI	TCCRAC	1 cut(s)	620
MroXI	GAANNNNTTC	1 cut(s)	51
MseI	TTAA	7 cut(s)	225, 414, 564, 602, 674, 810, 1107
MslI	CAYNNNNRTG	1 cut(s)	498
MspR9I	CCNGG	2 cut(s)	788, 1017
MunI	CAATTG	1 cut(s)	729
Mva1269I	GAATGC	1 cut(s)	491
MvaI	CCWGG	2 cut(s)	788, 1017
MwoI	GCNNNNNNNGC	2 cut(s)	797, 800
NdeI	CATATG	1 cut(s)	796
NdeII	GATC	3 cut(s)	133, 258, 504
NlaIII	CATG	6 cut(s)	16, 182, 352, 421, 503, 778
NlaIV	GGNNCC	4 cut(s)	10, 343, 354, 648
NmuCI	GTSAC	1 cut(s)	515
NsbI	TGCGCA	1 cut(s)	401
NspI	RCATGY	2 cut(s)	421, 778
PctI	GAATGC	1 cut(s)	491
PdmI	GAANNNNTTC	1 cut(s)	51
PfeI	GAWTC	4 cut(s)	74, 116, 853, 967
PflMI	CCANNNNNTGG	2 cut(s)	164, 709
PkrI	GCNGC	4 cut(s)	423, 793, 802, 805
PleI	GAGTC	2 cut(s)	604, 1018
PpsI	GAGTC	2 cut(s)	604, 1018
Ppu21I	YACGTR	1 cut(s)	1043
Psp6I	CCWGG	2 cut(s)	786, 1015
PspGI	CCWGG	2 cut(s)	786, 1015
PspN4I	GGNNCC	4 cut(s)	10, 343, 354, 648
PspPI	GGNCC	3 cut(s)	155, 646, 822
PstI	CTGCAG	1 cut(s)	550
RsaI	GTAC	4 cut(s)	659, 664, 1021, 1041
RsaNI	GTAC	4 cut(s)	658, 663, 1020, 1040
RseI	CAYNNNNRTG	1 cut(s)	498
SaqAI	TTAA	7 cut(s)	225, 414, 564, 602, 674, 810, 1107
SatI	GCNGC	4 cut(s)	422, 792, 801, 804
Sau3AI	GATC	3 cut(s)	133, 258, 504
Sau96I	GGNCC	3 cut(s)	155, 646, 822
ScaI	AGTACT	1 cut(s)	664
SchI	GAGTC	2 cut(s)	605, 1019
ScrFI	CCNGG	2 cut(s)	788, 1017
SduI	GDGCHC	1 cut(s)	178
SfaNI	GCATC	2 cut(s)	151, 703
SfcI	CTRYAG	2 cut(s)	546, 718
SmiMI	CAYNNNNRTG	1 cut(s)	498
Sse9I	AATT	8 cut(s)	47, 162, 222, 322, 729, 758, 901, 915
SsiI	CCGC	2 cut(s)	277, 421
SspMI	CTAG	4 cut(s)	306, 464, 569, 929
StyD4I	CCNGG	2 cut(s)	786, 1015
StyI	CCWWGG	1 cut(s)	425
TaaI	ACNGT	8 cut(s)	217, 515, 562, 638, 662, 667, 997, 1113
TaiI	ACGT	2 cut(s)	674, 1045
TaqI	TCGA	1 cut(s)	895
TasI	AATT	8 cut(s)	47, 162, 222, 322, 729, 758, 901, 915
TatI	WGTACW	2 cut(s)	657, 662
TauI	GCSGC	1 cut(s)	424
TfiI	GAWTC	4 cut(s)	74, 116, 853, 967
Tru1I	TTAA	7 cut(s)	225, 414, 564, 602, 674, 810, 1107
Tru9I	TTAA	7 cut(s)	225, 414, 564, 602, 674, 810, 1107
TscAI	CASTG	3 cut(s)	832, 1000, 1118
TseFI	GTSAC	1 cut(s)	515
TseI	GCWGC	3 cut(s)	791, 800, 803
Tsp45I	GTSAC	1 cut(s)	515
TspDTI	ATGAA	1 cut(s)	40
TspGWI	ACGGA	1 cut(s)	1088
TspRI	CASTG	3 cut(s)	832, 1000, 1118
Van91I	CCANNNNNTGG	2 cut(s)	164, 709
XagI	CCTNNNNNAGG	2 cut(s)	768, 842
XapI	RAATTY	2 cut(s)	47, 322
XbaI	TCTAGA	1 cut(s)	305
XceI	RCATGY	2 cut(s)	421, 778
XmnI	GAANNNNTTC	1 cut(s)	51
XspI	CTAG	4 cut(s)	306, 464, 569, 929
ZrmI	AGTACT	1 cut(s)	664

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.