Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0010690

Physical Location & Seq

Genomic Coordinates Reverse (-)

10160149 .. 10163634

Gene Structure 3486 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G010900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGGAATCTGGGAGTAGGTTTTACTCTGGTGATGAGTTCAGATTGGATTCCAAATGGCTGGTTGATCCTAAGCATCTGTTTGTTGGGCCAAGAATTGGAGAGGGTGCTCATGCCAAAGTGTATGAGGGCAAATACAAAAACCAGACTGTTGCAATTAAAGTTCTACATAAAGGAGAAACTCCAGAAGAGATCACCAAGAGACAAGGGCGGTTTGCCAGAGAGGTTGAAATGTTGTCTAGAGTTCAGCATAAGAATTTAGTGAAGTTTATTGGTGCCTGCATGGAGCCAGTAATGGTGATAGTTACTGAGCTTTTATTGGGTGGGACATTGCGCAAGTATTGTCTTAACATGCGGCCAAGGTGCTTGGACACACGAGTTGCTGTTGGTTTTGCCCTAGATATTGCTCGTGCAATGGAATGCTTACACTCTCATGGGATCATACACCGTGACTTGAAGCCTGAGAACTTGCTCTTGACTGCAGACCACAAAACTGTTAAACTAGCAGATTTTGGGTTAGCAAGAGAAGAGTCATTAACAGAGATGATGACTGCCGAAACTGGAACATACCGTTGGATGGCCCCAGAGTTGTACAGTACTGTTACGTTAAGGCAGGGAGAGAAGAAGCATTACAACCATAAAGTGGATGCCTATAGCTTTGCAATTGTTTTGTGGGAACTCTTACACAATAAATTGCCTTTTGAAGGCATGTCAAATCTCCAGGCAGCATATGCAGCAGCTTTTAAAAATGTGAGGCCCAGTGCTGACAACCTCCCAGAGGAGTTGAATCTCATCCTAACTTCGTGCTGGCAGGAGGACGCAAATGCTCGACCTAATTTCAGTCAGATAATTCAAATGCTACTAGATTATCTTTACACCATAGCTCCTCCTGAACCTGCGATTCCTTCTCGGATTTTCACCGAGAACACTGTCTTGCCTCCTGAGTCCCCTGGTACAAGCTCTTTGATGGCAGTACGTGATGATGGGGGGACACCCAAAGCACAAACGGAAGATGAGCCAAAAGGATTTTTCTTCTGCTTTAAACAGTGCTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

350

Amino Acids

39.66

Weight (kDa)

6.61

Isoelectric Point (pI)

47.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	30 - 285	8.4e-52	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	31 - 286	2e-57	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010690)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50180
fragaria_vesca	FvH4_5g06280 FvH4_5g06280 FvH4_5g06280 FvH4_5g06280
malus_domestica	MD06G1165800.v1.1 MD14G1171600.v1.1
prunus_persica	Prupe.5G165700_v2.0.a1 Prupe.5G165700_v2.0.a1
pyrus_communis	pycom06g14830 pycom14g14330
rosa_chinensis	RchiOBHm_Chr7g0192581
rosa_laevigata	RLG00000004350
rosa_rugosa	Rorug07G0002300 Rorug07G0002400
rosa_samantha	Rh7AG126800 Rh7BG129000 Rh7CG130900 Rh7DG130200
rosa_wichuraiana	Rw7G010900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	332
Acc36I	ACCTGC	1 cut(s)	901
AccB1I	GGYRCC	1 cut(s)	272
AccB7I	CCANNNNNTGG	2 cut(s)	95, 640
AciI	CCGC	2 cut(s)	208, 352
AclWI	GGATC	2 cut(s)	59, 443
AcoI	YGGCCR	1 cut(s)	353
AcsI	RAATTY	1 cut(s)	253
AfaI	GTAC	4 cut(s)	590, 595, 952, 972
AfiI	CCNNNNNNNGG	5 cut(s)	95, 574, 640, 701, 775
AgsI	TTSAA	5 cut(s)	227, 454, 701, 784, 851
AjnI	CCWGG	2 cut(s)	717, 946
AjuI	GAANNNNNNNTTGG	2 cut(s)	553, 585
AluBI	AGCT	5 cut(s)	310, 654, 737, 881, 957
AluI	AGCT	5 cut(s)	310, 654, 737, 881, 957
Alw21I	GWGCWC	1 cut(s)	109
Alw26I	GTCTC	1 cut(s)	193
AlwI	GGATC	2 cut(s)	59, 443
AoxI	GGCC	4 cut(s)	86, 353, 576, 752
ApeKI	GCWGC	3 cut(s)	722, 731, 734
ApoI	RAATTY	1 cut(s)	253
AspLEI	GCGC	1 cut(s)	333
AspS9I	GGNCC	3 cut(s)	86, 577, 753
AsuHPI	GGTGA	4 cut(s)	41, 184, 307, 907
BanI	GGYRCC	1 cut(s)	272
BarI	GAAGNNNNNNTAC	2 cut(s)	611, 643
BauI	CACGAG	2 cut(s)	372, 405
Bbv12I	GWGCWC	1 cut(s)	109
BbvI	GCAGC	3 cut(s)	734, 743, 746
BccI	CCATC	3 cut(s)	568, 958, 974
BciT130I	CCWGG	2 cut(s)	719, 948
BcoDI	GTCTC	1 cut(s)	193
BfaI	CTAG	4 cut(s)	237, 395, 500, 860
BfmI	CTRYAG	2 cut(s)	477, 649
BfuAI	ACCTGC	1 cut(s)	901
BisI	GCNGC	4 cut(s)	353, 723, 732, 735
BlsI	GCNGC	4 cut(s)	354, 724, 733, 736
BmcAI	AGTACT	1 cut(s)	595
Bme1390I	CCNGG	2 cut(s)	719, 948
BmgT120I	GGNCC	3 cut(s)	86, 577, 753
BmiI	GGNNCC	3 cut(s)	274, 285, 579
BmrFI	CCNGG	2 cut(s)	719, 948
BmrI	ACTGGG	1 cut(s)	750
BmsI	GCATC	2 cut(s)	82, 634
BmuI	ACTGGG	1 cut(s)	750
BpmI	CTGGAG	2 cut(s)	165, 701
Bpu10I	CCTNAGC	1 cut(s)	69
BsaAI	YACGTR	1 cut(s)	974
BsaJI	CCNNGG	2 cut(s)	356, 946
BsaXI	ACNNNNNCTCC	2 cut(s)	865, 895
Bsc4I	CCNNNNNNNGG	5 cut(s)	95, 574, 640, 701, 775
Bse1I	ACTGG	3 cut(s)	287, 562, 756
Bse3DI	GCAATG	2 cut(s)	326, 417
BseBI	CCWGG	2 cut(s)	719, 948
BseDI	CCNNGG	2 cut(s)	356, 946
BseGI	GGATG	3 cut(s)	579, 649, 789
BseLI	CCNNNNNNNGG	5 cut(s)	95, 574, 640, 701, 775
BseMI	GCAATG	2 cut(s)	326, 417
BseMII	CTCAG	3 cut(s)	297, 450, 930
BseNI	ACTGG	3 cut(s)	287, 562, 756
BseRI	GAGGAG	2 cut(s)	791, 873
BseXI	GCAGC	3 cut(s)	734, 743, 746
BshFI	GGCC	4 cut(s)	88, 355, 578, 754
BshNI	GGYRCC	1 cut(s)	272
BsiHKAI	GWGCWC	1 cut(s)	109
BslFI	GGGAC	3 cut(s)	337, 928, 1000
BslI	CCNNNNNNNGG	5 cut(s)	95, 574, 640, 701, 775
BsmAI	GTCTC	1 cut(s)	193
BsmFI	GGGAC	3 cut(s)	337, 928, 1000
BsmI	GAATGC	1 cut(s)	422
BsnI	GGCC	4 cut(s)	88, 355, 578, 754
Bsp1286I	GDGCHC	1 cut(s)	109
Bsp1407I	TGTACA	1 cut(s)	588
Bsp143I	GATC	3 cut(s)	64, 189, 435
BspACI	CCGC	2 cut(s)	208, 352
BspANI	GGCC	4 cut(s)	88, 355, 578, 754
BspCNI	CTCAG	3 cut(s)	298, 451, 931
BspLI	GGNNCC	3 cut(s)	274, 285, 579
BspMAI	CTGCAG	1 cut(s)	481
BspMI	ACCTGC	1 cut(s)	901
BspPI	GGATC	2 cut(s)	59, 443
BspT107I	GGYRCC	1 cut(s)	272
BsrDI	GCAATG	2 cut(s)	326, 417
BsrGI	TGTACA	1 cut(s)	588
BsrI	ACTGG	3 cut(s)	287, 562, 756
BssECI	CCNNGG	2 cut(s)	356, 946
BssMI	GATC	3 cut(s)	64, 189, 435
BssSI	CACGAG	2 cut(s)	372, 405
BssT1I	CCWWGG	1 cut(s)	356
Bst2BI	CACGAG	2 cut(s)	372, 405
Bst2UI	CCWGG	2 cut(s)	719, 948
Bst4CI	ACNGT	8 cut(s)	148, 446, 493, 569, 593, 598, 928, 1044
Bst6I	CTCTTC	2 cut(s)	180, 519
BstAPI	GCANNNNNTGC	1 cut(s)	728
BstAUI	TGTACA	1 cut(s)	588
BstBAI	YACGTR	1 cut(s)	974
BstC8I	GCNNGC	2 cut(s)	277, 806
BstDEI	CTNAG	4 cut(s)	69, 306, 459, 939
BstENI	CCTNNNNNAGG	2 cut(s)	699, 773
BstF5I	GGATG	3 cut(s)	579, 649, 789
BstHHI	GCGC	1 cut(s)	333
BstKTI	GATC	3 cut(s)	67, 192, 438
BstMAI	GTCTC	1 cut(s)	193
BstMBI	GATC	3 cut(s)	64, 189, 435
BstMWI	GCNNNNNNNGC	2 cut(s)	728, 731
BstNI	CCWGG	2 cut(s)	719, 948
BstNSI	RCATGY	2 cut(s)	352, 709
BstSCI	CCNGG	2 cut(s)	717, 946
BstSFI	CTRYAG	2 cut(s)	477, 649
BstV1I	GCAGC	3 cut(s)	734, 743, 746
BstXI	CCANNNNNNTGG	1 cut(s)	58
BsuRI	GGCC	4 cut(s)	88, 355, 578, 754
BtsCI	GGATG	3 cut(s)	579, 649, 789
BtsIMutI	CAGTG	3 cut(s)	763, 924, 1049
BveI	ACCTGC	1 cut(s)	901
Cac8I	GCNNGC	2 cut(s)	277, 806
CfoI	GCGC	1 cut(s)	333
Cfr13I	GGNCC	3 cut(s)	86, 577, 753
CseI	GACGC	1 cut(s)	824
Csp6I	GTAC	4 cut(s)	589, 594, 951, 971
CviAII	CATG	5 cut(s)	110, 280, 349, 431, 706
CviQI	GTAC	4 cut(s)	589, 594, 951, 971
DdeI	CTNAG	4 cut(s)	69, 306, 459, 939
DpnI	GATC	3 cut(s)	66, 191, 437
DpnII	GATC	3 cut(s)	64, 189, 435
DraI	TTTAAA	2 cut(s)	742, 1039
EaeI	YGGCCR	1 cut(s)	353
Eam1104I	CTCTTC	2 cut(s)	180, 519
EarI	CTCTTC	2 cut(s)	180, 519
Eco130I	CCWWGG	1 cut(s)	356
EcoNI	CCTNNNNNAGG	2 cut(s)	699, 773
EcoRII	CCWGG	2 cut(s)	717, 946
EcoT14I	CCWWGG	1 cut(s)	356
ErhI	CCWWGG	1 cut(s)	356
FaeI	CATG	5 cut(s)	113, 283, 352, 434, 709
FaqI	GGGAC	3 cut(s)	337, 928, 1000
FatI	CATG	5 cut(s)	109, 279, 348, 430, 705
FauNDI	CATATG	1 cut(s)	727
Fnu4HI	GCNGC	4 cut(s)	353, 723, 732, 735
FokI	GGATG	3 cut(s)	586, 656, 776
Fsp4HI	GCNGC	4 cut(s)	353, 723, 732, 735
FspBI	CTAG	4 cut(s)	237, 395, 500, 860
FspI	TGCGCA	1 cut(s)	332
GlaI	GCGC	1 cut(s)	332
GluI	GCNGC	4 cut(s)	353, 723, 732, 735
GsuI	CTGGAG	2 cut(s)	165, 701
HaeIII	GGCC	4 cut(s)	88, 355, 578, 754
HgaI	GACGC	1 cut(s)	824
HhaI	GCGC	1 cut(s)	333
Hin1II	CATG	5 cut(s)	113, 283, 352, 434, 709
Hin6I	GCGC	1 cut(s)	331
HinP1I	GCGC	1 cut(s)	331
HinfI	GANTC	6 cut(s)	5, 47, 527, 784, 898, 941
HphI	GGTGA	4 cut(s)	41, 184, 307, 907
Hpy188I	TCNGA	3 cut(s)	41, 843, 909
Hpy188III	TCNNGA	5 cut(s)	182, 237, 472, 887, 938
HpyAV	CCTTC	2 cut(s)	695, 912
HpyCH4III	ACNGT	8 cut(s)	148, 446, 493, 569, 593, 598, 928, 1044
HpyCH4IV	ACGT	2 cut(s)	602, 973
HpyCH4V	TGCA	6 cut(s)	152, 279, 410, 479, 659, 731
HpyF10VI	GCNNNNNNNGC	2 cut(s)	728, 731
HpyF3I	CTNAG	4 cut(s)	69, 306, 459, 939
HpySE526I	ACGT	2 cut(s)	602, 973
Hsp92II	CATG	5 cut(s)	113, 283, 352, 434, 709
HspAI	GCGC	1 cut(s)	331
Kzo9I	GATC	3 cut(s)	64, 189, 435
LmnI	GCTCC	2 cut(s)	283, 886
Lsp1109I	GCAGC	3 cut(s)	734, 743, 746
LweI	GCATC	2 cut(s)	82, 634
MaeI	CTAG	4 cut(s)	237, 395, 500, 860
MaeII	ACGT	2 cut(s)	602, 973
MaeIII	GTNAC	3 cut(s)	301, 446, 598
MalI	GATC	3 cut(s)	66, 191, 437
MboI	GATC	3 cut(s)	64, 189, 435
MboII	GAAGA	5 cut(s)	197, 536, 631, 1019, 1021
MfeI	CAATTG	1 cut(s)	660
MhlI	GDGCHC	1 cut(s)	109
MluCI	AATT	7 cut(s)	93, 153, 253, 660, 689, 832, 846
MlyI	GAGTC	2 cut(s)	536, 950
MmeI	TCCRAC	1 cut(s)	551
MnlI	CCTC	9 cut(s)	94, 118, 214, 744, 769, 779, 805, 894, 945
MseI	TTAA	7 cut(s)	156, 345, 495, 533, 605, 741, 1038
MslI	CAYNNNNRTG	1 cut(s)	429
MspR9I	CCNGG	2 cut(s)	719, 948
MunI	CAATTG	1 cut(s)	660
Mva1269I	GAATGC	1 cut(s)	422
MvaI	CCWGG	2 cut(s)	719, 948
MwoI	GCNNNNNNNGC	2 cut(s)	728, 731
NdeI	CATATG	1 cut(s)	727
NdeII	GATC	3 cut(s)	64, 189, 435
NlaIII	CATG	5 cut(s)	113, 283, 352, 434, 709
NlaIV	GGNNCC	3 cut(s)	274, 285, 579
NmuCI	GTSAC	1 cut(s)	446
NsbI	TGCGCA	1 cut(s)	332
NspI	RCATGY	2 cut(s)	352, 709
PctI	GAATGC	1 cut(s)	422
PfeI	GAWTC	4 cut(s)	5, 47, 784, 898
PflMI	CCANNNNNTGG	2 cut(s)	95, 640
PkrI	GCNGC	4 cut(s)	354, 724, 733, 736
PleI	GAGTC	2 cut(s)	535, 949
PpsI	GAGTC	2 cut(s)	535, 949
Ppu21I	YACGTR	1 cut(s)	974
Psp6I	CCWGG	2 cut(s)	717, 946
PspGI	CCWGG	2 cut(s)	717, 946
PspN4I	GGNNCC	3 cut(s)	274, 285, 579
PspPI	GGNCC	3 cut(s)	86, 577, 753
PstI	CTGCAG	1 cut(s)	481
RsaI	GTAC	4 cut(s)	590, 595, 952, 972
RsaNI	GTAC	4 cut(s)	589, 594, 951, 971
RseI	CAYNNNNRTG	1 cut(s)	429
SaqAI	TTAA	7 cut(s)	156, 345, 495, 533, 605, 741, 1038
SatI	GCNGC	4 cut(s)	353, 723, 732, 735
Sau3AI	GATC	3 cut(s)	64, 189, 435
Sau96I	GGNCC	3 cut(s)	86, 577, 753
ScaI	AGTACT	1 cut(s)	595
SchI	GAGTC	2 cut(s)	536, 950
ScrFI	CCNGG	2 cut(s)	719, 948
SduI	GDGCHC	1 cut(s)	109
SfaNI	GCATC	2 cut(s)	82, 634
SfcI	CTRYAG	2 cut(s)	477, 649
SmiMI	CAYNNNNRTG	1 cut(s)	429
Sse9I	AATT	7 cut(s)	93, 153, 253, 660, 689, 832, 846
SsiI	CCGC	2 cut(s)	208, 352
SspMI	CTAG	4 cut(s)	237, 395, 500, 860
StyD4I	CCNGG	2 cut(s)	717, 946
StyI	CCWWGG	1 cut(s)	356
TaaI	ACNGT	8 cut(s)	148, 446, 493, 569, 593, 598, 928, 1044
TaiI	ACGT	2 cut(s)	605, 976
TaqI	TCGA	1 cut(s)	826
TasI	AATT	7 cut(s)	93, 153, 253, 660, 689, 832, 846
TatI	WGTACW	2 cut(s)	588, 593
TauI	GCSGC	1 cut(s)	355
TfiI	GAWTC	4 cut(s)	5, 47, 784, 898
Tru1I	TTAA	7 cut(s)	156, 345, 495, 533, 605, 741, 1038
Tru9I	TTAA	7 cut(s)	156, 345, 495, 533, 605, 741, 1038
TscAI	CASTG	3 cut(s)	763, 931, 1049
TseFI	GTSAC	1 cut(s)	446
TseI	GCWGC	3 cut(s)	722, 731, 734
Tsp45I	GTSAC	1 cut(s)	446
TspGWI	ACGGA	1 cut(s)	1019
TspRI	CASTG	3 cut(s)	763, 931, 1049
Van91I	CCANNNNNTGG	2 cut(s)	95, 640
XagI	CCTNNNNNAGG	2 cut(s)	699, 773
XapI	RAATTY	1 cut(s)	253
XbaI	TCTAGA	1 cut(s)	236
XceI	RCATGY	2 cut(s)	352, 709
XspI	CTAG	4 cut(s)	237, 395, 500, 860
ZrmI	AGTACT	1 cut(s)	595

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.