Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0010690

Physical Location & Seq

Genomic Coordinates Reverse (-)

9938324 .. 9944173

Gene Structure 5850 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG126800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGGAGCCAGTAATGGTGATAGTTACTGAGCTTTTATTGGGTGGGACATTGCGCAAGTATTGTCTTAACATGCGGCCAAGGTGCTTGGACACACGAGTTGCAGTTGGTTTTGCCCTAGATATTGCTCGTGCAATGGAATGCTTACACTCTCATGGGATCATACACCGCGACTTGAAGCCTGAGAACTTGCTCTTGACTGCAGACCACAAAACTGTTAAACTAGCAGATTTTGGGTTAGCAAGAGAAGAGTCATTAACAGAGATGATGACTGCCGAAACTGGAACATACCGTTGGATGGCCCCAGAGTTGTACAGTACTGTTACGTTAAGGCAGGGAGAGAAGAAGCATTACAACCATAAAGTGGATGCCTATAGCTTTGCAATTGTTTTGTGGGAACTCTTACACAATAAATTGCCTTTTGAAGGCATGTCAAATCTCCAGGCAGCATATGCAGCAGCTTTTAAAAATGTGAGGCCCAGTGCTGACAACCTCCCAGAGGAGTTGAATCTCATCCTAACTTCGTGCTGGCAGGAGGACGCAAATGCTCGACCTAATTTCAGTCAGATAATTCAAATGCTACTAGATTATCTTTACACCATAGCTCCTCCTGAACCTGCGATTCCTTCTCGGATTTTCACCGAGAACACTGTCTTGCCTCCTGAGTCCCCTGGTACAAGCTCTTTGATGGCAGTACGTGATGATGGGGGGACACCCAAAGCGCAAACGGAAGATGAGCCAAAAGGATTTTTCTTCTGCTTTAAACAGTGCTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

257

Amino Acids

29.02

Weight (kDa)

5.54

Isoelectric Point (pI)

52.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	5 - 193	2.3e-40	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	5 - 192	1.5e-37	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010690)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50180
fragaria_vesca	FvH4_5g06280 FvH4_5g06280 FvH4_5g06280 FvH4_5g06280
malus_domestica	MD06G1165800.v1.1 MD14G1171600.v1.1
prunus_persica	Prupe.5G165700_v2.0.a1 Prupe.5G165700_v2.0.a1
pyrus_communis	pycom06g14830 pycom14g14330
rosa_chinensis	RchiOBHm_Chr7g0192581
rosa_laevigata	RLG00000004350
rosa_rugosa	Rorug07G0002300 Rorug07G0002400
rosa_samantha	Rh7AG126800 Rh7BG129000 Rh7CG130900 Rh7DG130200
rosa_wichuraiana	Rw7G010900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	53
Acc36I	ACCTGC	1 cut(s)	622
AccB7I	CCANNNNNTGG	1 cut(s)	361
AccII	CGCG	1 cut(s)	168
AciI	CCGC	2 cut(s)	73, 166
AclWI	GGATC	1 cut(s)	164
AcoI	YGGCCR	1 cut(s)	74
AfaI	GTAC	4 cut(s)	311, 316, 673, 693
AfiI	CCNNNNNNNGG	4 cut(s)	295, 361, 422, 496
AgsI	TTSAA	4 cut(s)	175, 422, 505, 572
AjnI	CCWGG	2 cut(s)	438, 667
AjuI	GAANNNNNNNTTGG	2 cut(s)	274, 306
AluBI	AGCT	5 cut(s)	31, 375, 458, 602, 678
AluI	AGCT	5 cut(s)	31, 375, 458, 602, 678
AlwI	GGATC	1 cut(s)	164
AoxI	GGCC	3 cut(s)	74, 297, 473
ApeKI	GCWGC	3 cut(s)	443, 452, 455
AspLEI	GCGC	2 cut(s)	54, 721
AspS9I	GGNCC	2 cut(s)	298, 474
AsuHPI	GGTGA	2 cut(s)	28, 628
BarI	GAAGNNNNNNTAC	2 cut(s)	332, 364
BauI	CACGAG	2 cut(s)	93, 126
BbvI	GCAGC	3 cut(s)	455, 464, 467
BccI	CCATC	3 cut(s)	289, 679, 695
BciT130I	CCWGG	2 cut(s)	440, 669
BfaI	CTAG	3 cut(s)	116, 221, 581
BfmI	CTRYAG	2 cut(s)	198, 370
BfuAI	ACCTGC	1 cut(s)	622
BisI	GCNGC	4 cut(s)	74, 444, 453, 456
BlsI	GCNGC	4 cut(s)	75, 445, 454, 457
BmcAI	AGTACT	1 cut(s)	316
Bme1390I	CCNGG	2 cut(s)	440, 669
BmgT120I	GGNCC	2 cut(s)	298, 474
BmiI	GGNNCC	2 cut(s)	6, 300
BmrFI	CCNGG	2 cut(s)	440, 669
BmrI	ACTGGG	1 cut(s)	471
BmsI	GCATC	1 cut(s)	355
BmuI	ACTGGG	1 cut(s)	471
BpmI	CTGGAG	1 cut(s)	422
BsaAI	YACGTR	1 cut(s)	695
BsaJI	CCNNGG	2 cut(s)	77, 667
BsaXI	ACNNNNNCTCC	2 cut(s)	586, 616
Bsc4I	CCNNNNNNNGG	4 cut(s)	295, 361, 422, 496
Bse1I	ACTGG	3 cut(s)	8, 283, 477
Bse3DI	GCAATG	2 cut(s)	47, 138
BseBI	CCWGG	2 cut(s)	440, 669
BseDI	CCNNGG	2 cut(s)	77, 667
BseGI	GGATG	3 cut(s)	300, 370, 510
BseLI	CCNNNNNNNGG	4 cut(s)	295, 361, 422, 496
BseMI	GCAATG	2 cut(s)	47, 138
BseMII	CTCAG	3 cut(s)	18, 171, 651
BseNI	ACTGG	3 cut(s)	8, 283, 477
BseRI	GAGGAG	2 cut(s)	512, 594
BseXI	GCAGC	3 cut(s)	455, 464, 467
Bsh1236I	CGCG	1 cut(s)	168
BshFI	GGCC	3 cut(s)	76, 299, 475
BslFI	GGGAC	3 cut(s)	58, 649, 721
BslI	CCNNNNNNNGG	4 cut(s)	295, 361, 422, 496
BsmFI	GGGAC	3 cut(s)	58, 649, 721
BsmI	GAATGC	1 cut(s)	143
BsnI	GGCC	3 cut(s)	76, 299, 475
Bsp1407I	TGTACA	1 cut(s)	309
Bsp143I	GATC	1 cut(s)	156
BspACI	CCGC	2 cut(s)	73, 166
BspANI	GGCC	3 cut(s)	76, 299, 475
BspCNI	CTCAG	3 cut(s)	19, 172, 652
BspFNI	CGCG	1 cut(s)	168
BspLI	GGNNCC	2 cut(s)	6, 300
BspMAI	CTGCAG	1 cut(s)	202
BspMI	ACCTGC	1 cut(s)	622
BspPI	GGATC	1 cut(s)	164
BsrDI	GCAATG	2 cut(s)	47, 138
BsrGI	TGTACA	1 cut(s)	309
BsrI	ACTGG	3 cut(s)	8, 283, 477
BssECI	CCNNGG	2 cut(s)	77, 667
BssMI	GATC	1 cut(s)	156
BssSI	CACGAG	2 cut(s)	93, 126
BssT1I	CCWWGG	1 cut(s)	77
Bst2BI	CACGAG	2 cut(s)	93, 126
Bst2UI	CCWGG	2 cut(s)	440, 669
Bst4CI	ACNGT	6 cut(s)	214, 290, 314, 319, 649, 765
Bst6I	CTCTTC	1 cut(s)	240
BstAPI	GCANNNNNTGC	1 cut(s)	449
BstAUI	TGTACA	1 cut(s)	309
BstBAI	YACGTR	1 cut(s)	695
BstC8I	GCNNGC	1 cut(s)	527
BstDEI	CTNAG	3 cut(s)	27, 180, 660
BstENI	CCTNNNNNAGG	2 cut(s)	420, 494
BstF5I	GGATG	3 cut(s)	300, 370, 510
BstFNI	CGCG	1 cut(s)	168
BstHHI	GCGC	2 cut(s)	54, 721
BstKTI	GATC	1 cut(s)	159
BstMBI	GATC	1 cut(s)	156
BstMWI	GCNNNNNNNGC	2 cut(s)	449, 452
BstNI	CCWGG	2 cut(s)	440, 669
BstNSI	RCATGY	2 cut(s)	73, 430
BstSCI	CCNGG	2 cut(s)	438, 667
BstSFI	CTRYAG	2 cut(s)	198, 370
BstUI	CGCG	1 cut(s)	168
BstV1I	GCAGC	3 cut(s)	455, 464, 467
BsuRI	GGCC	3 cut(s)	76, 299, 475
BtsCI	GGATG	3 cut(s)	300, 370, 510
BtsIMutI	CAGTG	3 cut(s)	484, 645, 770
BveI	ACCTGC	1 cut(s)	622
Cac8I	GCNNGC	1 cut(s)	527
CfoI	GCGC	2 cut(s)	54, 721
Cfr13I	GGNCC	2 cut(s)	298, 474
CseI	GACGC	1 cut(s)	545
Csp6I	GTAC	4 cut(s)	310, 315, 672, 692
CviAII	CATG	3 cut(s)	70, 152, 427
CviQI	GTAC	4 cut(s)	310, 315, 672, 692
DdeI	CTNAG	3 cut(s)	27, 180, 660
DpnI	GATC	1 cut(s)	158
DpnII	GATC	1 cut(s)	156
DraI	TTTAAA	2 cut(s)	463, 760
EaeI	YGGCCR	1 cut(s)	74
Eam1104I	CTCTTC	1 cut(s)	240
EarI	CTCTTC	1 cut(s)	240
Eco130I	CCWWGG	1 cut(s)	77
EcoNI	CCTNNNNNAGG	2 cut(s)	420, 494
EcoRII	CCWGG	2 cut(s)	438, 667
EcoT14I	CCWWGG	1 cut(s)	77
ErhI	CCWWGG	1 cut(s)	77
FaeI	CATG	3 cut(s)	73, 155, 430
FaqI	GGGAC	3 cut(s)	58, 649, 721
FatI	CATG	3 cut(s)	69, 151, 426
FauNDI	CATATG	1 cut(s)	448
Fnu4HI	GCNGC	4 cut(s)	74, 444, 453, 456
FokI	GGATG	3 cut(s)	307, 377, 497
Fsp4HI	GCNGC	4 cut(s)	74, 444, 453, 456
FspBI	CTAG	3 cut(s)	116, 221, 581
FspI	TGCGCA	1 cut(s)	53
GlaI	GCGC	2 cut(s)	53, 720
GluI	GCNGC	4 cut(s)	74, 444, 453, 456
GsuI	CTGGAG	1 cut(s)	422
HaeIII	GGCC	3 cut(s)	76, 299, 475
HgaI	GACGC	1 cut(s)	545
HhaI	GCGC	2 cut(s)	54, 721
Hin1II	CATG	3 cut(s)	73, 155, 430
Hin6I	GCGC	2 cut(s)	52, 719
HinP1I	GCGC	2 cut(s)	52, 719
HinfI	GANTC	4 cut(s)	248, 505, 619, 662
HphI	GGTGA	2 cut(s)	28, 628
Hpy188I	TCNGA	2 cut(s)	564, 630
Hpy188III	TCNNGA	3 cut(s)	193, 608, 659
HpyAV	CCTTC	2 cut(s)	416, 633
HpyCH4III	ACNGT	6 cut(s)	214, 290, 314, 319, 649, 765
HpyCH4IV	ACGT	2 cut(s)	323, 694
HpyCH4V	TGCA	5 cut(s)	101, 131, 200, 380, 452
HpyF10VI	GCNNNNNNNGC	2 cut(s)	449, 452
HpyF3I	CTNAG	3 cut(s)	27, 180, 660
HpySE526I	ACGT	2 cut(s)	323, 694
Hsp92II	CATG	3 cut(s)	73, 155, 430
HspAI	GCGC	2 cut(s)	52, 719
Kzo9I	GATC	1 cut(s)	156
LmnI	GCTCC	2 cut(s)	4, 607
Lsp1109I	GCAGC	3 cut(s)	455, 464, 467
LweI	GCATC	1 cut(s)	355
MaeI	CTAG	3 cut(s)	116, 221, 581
MaeII	ACGT	2 cut(s)	323, 694
MaeIII	GTNAC	2 cut(s)	22, 319
MalI	GATC	1 cut(s)	158
MboI	GATC	1 cut(s)	156
MboII	GAAGA	4 cut(s)	257, 352, 740, 742
MfeI	CAATTG	1 cut(s)	381
MluCI	AATT	4 cut(s)	381, 410, 553, 567
MlyI	GAGTC	2 cut(s)	257, 671
MmeI	TCCRAC	1 cut(s)	272
MnlI	CCTC	6 cut(s)	465, 490, 500, 526, 615, 666
MseI	TTAA	6 cut(s)	66, 216, 254, 326, 462, 759
MslI	CAYNNNNRTG	1 cut(s)	150
MspR9I	CCNGG	2 cut(s)	440, 669
MunI	CAATTG	1 cut(s)	381
Mva1269I	GAATGC	1 cut(s)	143
MvaI	CCWGG	2 cut(s)	440, 669
MvnI	CGCG	1 cut(s)	168
MwoI	GCNNNNNNNGC	2 cut(s)	449, 452
NdeI	CATATG	1 cut(s)	448
NdeII	GATC	1 cut(s)	156
NlaIII	CATG	3 cut(s)	73, 155, 430
NlaIV	GGNNCC	2 cut(s)	6, 300
NsbI	TGCGCA	1 cut(s)	53
NspI	RCATGY	2 cut(s)	73, 430
PctI	GAATGC	1 cut(s)	143
PfeI	GAWTC	2 cut(s)	505, 619
PflMI	CCANNNNNTGG	1 cut(s)	361
PkrI	GCNGC	4 cut(s)	75, 445, 454, 457
PleI	GAGTC	2 cut(s)	256, 670
PpsI	GAGTC	2 cut(s)	256, 670
Ppu21I	YACGTR	1 cut(s)	695
Psp6I	CCWGG	2 cut(s)	438, 667
PspGI	CCWGG	2 cut(s)	438, 667
PspN4I	GGNNCC	2 cut(s)	6, 300
PspPI	GGNCC	2 cut(s)	298, 474
PstI	CTGCAG	1 cut(s)	202
RsaI	GTAC	4 cut(s)	311, 316, 673, 693
RsaNI	GTAC	4 cut(s)	310, 315, 672, 692
RseI	CAYNNNNRTG	1 cut(s)	150
SaqAI	TTAA	6 cut(s)	66, 216, 254, 326, 462, 759
SatI	GCNGC	4 cut(s)	74, 444, 453, 456
Sau3AI	GATC	1 cut(s)	156
Sau96I	GGNCC	2 cut(s)	298, 474
ScaI	AGTACT	1 cut(s)	316
SchI	GAGTC	2 cut(s)	257, 671
ScrFI	CCNGG	2 cut(s)	440, 669
SfaNI	GCATC	1 cut(s)	355
SfcI	CTRYAG	2 cut(s)	198, 370
SmiMI	CAYNNNNRTG	1 cut(s)	150
Sse9I	AATT	4 cut(s)	381, 410, 553, 567
SsiI	CCGC	2 cut(s)	73, 166
SspMI	CTAG	3 cut(s)	116, 221, 581
StyD4I	CCNGG	2 cut(s)	438, 667
StyI	CCWWGG	1 cut(s)	77
TaaI	ACNGT	6 cut(s)	214, 290, 314, 319, 649, 765
TaiI	ACGT	2 cut(s)	326, 697
TaqI	TCGA	1 cut(s)	547
TasI	AATT	4 cut(s)	381, 410, 553, 567
TatI	WGTACW	2 cut(s)	309, 314
TauI	GCSGC	1 cut(s)	76
TfiI	GAWTC	2 cut(s)	505, 619
Tru1I	TTAA	6 cut(s)	66, 216, 254, 326, 462, 759
Tru9I	TTAA	6 cut(s)	66, 216, 254, 326, 462, 759
TscAI	CASTG	3 cut(s)	484, 652, 770
TseI	GCWGC	3 cut(s)	443, 452, 455
TspGWI	ACGGA	1 cut(s)	740
TspRI	CASTG	3 cut(s)	484, 652, 770
Van91I	CCANNNNNTGG	1 cut(s)	361
XagI	CCTNNNNNAGG	2 cut(s)	420, 494
XceI	RCATGY	2 cut(s)	73, 430
XspI	CTAG	3 cut(s)	116, 221, 581
ZrmI	AGTACT	1 cut(s)	316

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.