MD06G1165800.v1.1
ERF Family

belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
Physical Location & Seq
Reverse (-)
30576971 .. 30588805
11835 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1165800.v1.1.491

Sequence Viewer

Length: 1104 bp
ATGTGGGGTTCCATGCTTTTGCCTTCTCCAAGGACATGTAAAAAGATGGAATCTGGGAGTAGGTTTTACTCAGCTGATGAGTTCAGATTGGATGCCAAATGGCTGATTGATCCCAAGCATCTGTTTGTTGGGCCAAGAATTGGTGAGGGAGCTCATGCCAAAGTCTATGAGGGCAAATACAAAAACCAGACTGTTGCAATCAAAGTTGTTCATAGAGGAGAAACTCCAGAGGAGATTATCAAGAAAGAAGGACGGTTTGCCAGAGAGGTTGCCATGTTGTCGAGAGTTCAACATAAAAATTTAGTGAAGTTTATTGGTGCCTGCAAGGAGCCAGTGATGGTGATAGTTACTGAGCTTTTGTTGGGAGGTACATTGCGCAAATATTGTCTAAACATGCGGCCGAGGTGCTTGGACATACGCGTTGCTGTTGGTTTCGCATTGGATATTGCTCGTGCGATGGAGTGCTTGCACTCTCATGGGATCATACACCGTGATTTGAAGCCTGAGAACTTGCTCTTGACTGCAGACCACAAAACAGTTAAATTAGCGGATTTTGGGTTGGCAAGAGAAGAGTCATTAACAGAGATGATGACTGCAGAAACGGGGACATACCGTTGGATGGCTCCGGAGTTGTACAGTACTGTTACATTAAGGCAAGGAGAGGGAAAGCATTACAACCACAAAGTGGACGCATATAGCTTCGCAATTGTTTTGTGGGAACTCTTACACAACAAATTGCCTTTCGAAGGCATGTCAAATCTCCAGGCAGCATATGCAGCTGCATTTAAAAATGTGAGGCCTAGTTCTGAGAACATCCCTGAGGAGTTGAACATCATCCTAACTTCATGCTGGCAGGAGGACCCGAATGCTCGGCCTAATTTCAGCCAAATAATTCAAATGCTACTCGATTTTCTTTACACCATATCTCCTCCCGAACCTGCCATTCCATCACGGATGTTCACTGAGAACACCGTCTTGCCACCAGAGTCTCCTGGTACAAGCGCCTTGATGGCAGCACGCGAAGGCTCAGGGGAGACGCCCAAATTAGGAGATATGGAAGACAAGCCAAAAGGTTTTTTCTTCTGCTTTAACCAGTGTTATTGA

Protein Analysis

368

Amino Acids

41.51

Weight (kDa)

7.62

Isoelectric Point (pI)

46.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 45 - 300 6.6e-52 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 46 - 301 7.3e-57 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 377
Acc36I ACCTGC 1 cut(s) 946
AccB1I GGYRCC 1 cut(s) 317
AccB7I CCANNNNNTGG 2 cut(s) 140, 685
AccII CGCG 2 cut(s) 420, 1020
AccIII TCCGGA 1 cut(s) 625
AciI CCGC 2 cut(s) 397, 548
AclWI GGATC 2 cut(s) 104, 488
AcoI YGGCCR 1 cut(s) 398
AcsI RAATTY 1 cut(s) 298
AcyI GRCGYC 1 cut(s) 1037
AdeI CACNNNGTG 1 cut(s) 685
AfaI GTAC 4 cut(s) 370, 635, 640, 997
AfiI CCNNNNNNNGG 5 cut(s) 140, 619, 685, 746, 1046
AflIII ACRYGT 2 cut(s) 35, 418
AgsI TTSAA 4 cut(s) 290, 499, 829, 896
AjnI CCWGG 2 cut(s) 762, 991
AluBI AGCT 5 cut(s) 74, 152, 355, 699, 779
AluI AGCT 5 cut(s) 74, 152, 355, 699, 779
Alw21I GWGCWC 1 cut(s) 154
Alw26I GTCTC 2 cut(s) 993, 1028
AlwI GGATC 2 cut(s) 104, 488
Aor13HI TCCGGA 1 cut(s) 625
AoxI GGCC 4 cut(s) 131, 398, 797, 872
ApeKI GCWGC 4 cut(s) 767, 776, 779, 1013
ApoI RAATTY 1 cut(s) 298
AspLEI GCGC 2 cut(s) 378, 1004
AspS9I GGNCC 2 cut(s) 131, 859
AsuHPI GGTGA 2 cut(s) 155, 352
AsuII TTCGAA 1 cut(s) 744
AvaII GGWCC 1 cut(s) 859
AxyI CCTNAGG 1 cut(s) 819
BanI GGYRCC 1 cut(s) 317
BanII GRGCYC 1 cut(s) 154
BauI CACGAG 1 cut(s) 450
BbsI GAAGAC 1 cut(s) 1065
Bbv12I GWGCWC 1 cut(s) 154
BbvI GCAGC 4 cut(s) 766, 779, 788, 1025
BccI CCATC 6 cut(s) 40, 331, 451, 613, 955, 1003
BciT130I CCWGG 2 cut(s) 764, 993
BcoDI GTCTC 2 cut(s) 993, 1028
BfaI CTAG 1 cut(s) 801
BfmI CTRYAG 2 cut(s) 522, 594
BfoI RGCGCY 1 cut(s) 1005
BfuAI ACCTGC 1 cut(s) 946
BglI GCCNNNNNGGC 1 cut(s) 1010
BisI GCNGC 5 cut(s) 398, 768, 777, 780, 1014
BlsI GCNGC 5 cut(s) 399, 769, 778, 781, 1015
BmcAI AGTACT 1 cut(s) 640
Bme1390I CCNGG 2 cut(s) 764, 993
Bme18I GGWCC 1 cut(s) 859
BmgT120I GGNCC 2 cut(s) 131, 859
BmiI GGNNCC 5 cut(s) 10, 319, 330, 624, 861
BmrFI CCNGG 2 cut(s) 764, 993
BmsI GCATC 2 cut(s) 82, 127
BpiI GAAGAC 1 cut(s) 1065
BpmI CTGGAG 2 cut(s) 210, 746
Bpu10I CCTNAGC 1 cut(s) 1027
Bpu14I TTCGAA 1 cut(s) 744
BsaHI GRCGYC 1 cut(s) 1037
BsaJI CCNNGG 2 cut(s) 29, 401
BsaWI WCCGGW 1 cut(s) 625
BsaXI ACNNNNNCTCC 2 cut(s) 910, 940
Bsc4I CCNNNNNNNGG 5 cut(s) 140, 619, 685, 746, 1046
Bse1I ACTGG 2 cut(s) 332, 1093
Bse21I CCTNAGG 1 cut(s) 819
Bse3DI GCAATG 1 cut(s) 371
BseAI TCCGGA 1 cut(s) 625
BseBI CCWGG 2 cut(s) 764, 993
BseDI CCNNGG 2 cut(s) 29, 401
BseGI GGATG 5 cut(s) 97, 624, 813, 834, 960
BseLI CCNNNNNNNGG 5 cut(s) 140, 619, 685, 746, 1046
BseMI GCAATG 1 cut(s) 371
BseMII CTCAG 7 cut(s) 84, 342, 495, 798, 810, 954, 1041
BseNI ACTGG 2 cut(s) 332, 1093
BseRI GAGGAG 4 cut(s) 231, 245, 836, 918
BseX3I CGGCCG 1 cut(s) 398
BseXI GCAGC 4 cut(s) 766, 779, 788, 1025
Bsh1236I CGCG 2 cut(s) 420, 1020
Bsh1285I CGRYCG 1 cut(s) 401
BshFI GGCC 4 cut(s) 133, 400, 799, 874
BshNI GGYRCC 1 cut(s) 317
BsiEI CGRYCG 1 cut(s) 401
BsiHKAI GWGCWC 1 cut(s) 154
BsiSI CCGG 1 cut(s) 626
BslFI GGGAC 1 cut(s) 619
BslI CCNNNNNNNGG 5 cut(s) 140, 619, 685, 746, 1046
BsmAI GTCTC 2 cut(s) 993, 1028
BsmBI CGTCTC 1 cut(s) 1028
BsmFI GGGAC 1 cut(s) 619
BsmI GAATGC 1 cut(s) 871
BsnI GGCC 4 cut(s) 133, 400, 799, 874
Bsp119I TTCGAA 1 cut(s) 744
Bsp1286I GDGCHC 1 cut(s) 154
Bsp13I TCCGGA 1 cut(s) 625
Bsp1407I TGTACA 1 cut(s) 633
Bsp143I GATC 2 cut(s) 109, 480
BspACI CCGC 2 cut(s) 397, 548
BspANI GGCC 4 cut(s) 133, 400, 799, 874
BspCNI CTCAG 7 cut(s) 83, 343, 496, 799, 811, 955, 1040
BspEI TCCGGA 1 cut(s) 625
BspFNI CGCG 2 cut(s) 420, 1020
BspLI GGNNCC 5 cut(s) 10, 319, 330, 624, 861
BspMAI CTGCAG 2 cut(s) 526, 598
BspMI ACCTGC 1 cut(s) 946
BspPI GGATC 2 cut(s) 104, 488
BspT104I TTCGAA 1 cut(s) 744
BspT107I GGYRCC 1 cut(s) 317
BsrDI GCAATG 1 cut(s) 371
BsrGI TGTACA 1 cut(s) 633
BsrI ACTGG 2 cut(s) 332, 1093
BssECI CCNNGG 2 cut(s) 29, 401
BssMI GATC 2 cut(s) 109, 480
BssNI GRCGYC 1 cut(s) 1037
BssSI CACGAG 1 cut(s) 450
BssT1I CCWWGG 1 cut(s) 29
Bst2BI CACGAG 1 cut(s) 450
Bst2UI CCWGG 2 cut(s) 764, 993
Bst4CI ACNGT 8 cut(s) 193, 255, 491, 538, 614, 638, 643, 973
Bst6I CTCTTC 1 cut(s) 564
BstACI GRCGYC 1 cut(s) 1037
BstAPI GCANNNNNTGC 1 cut(s) 773
BstAUI TGTACA 1 cut(s) 633
BstBI TTCGAA 1 cut(s) 744
BstC8I GCNNGC 4 cut(s) 322, 467, 851, 1018
BstDEI CTNAG 7 cut(s) 70, 351, 504, 807, 819, 963, 1027
BstENI CCTNNNNNAGG 1 cut(s) 744
BstF5I GGATG 5 cut(s) 97, 624, 813, 834, 960
BstFNI CGCG 2 cut(s) 420, 1020
BstH2I RGCGCY 1 cut(s) 1005
BstHHI GCGC 2 cut(s) 378, 1004
BstKTI GATC 2 cut(s) 112, 483
BstMAI GTCTC 2 cut(s) 993, 1028
BstMBI GATC 2 cut(s) 109, 480
BstMCI CGRYCG 1 cut(s) 401
BstMWI GCNNNNNNNGC 3 cut(s) 773, 776, 1010
BstNI CCWGG 2 cut(s) 764, 993
BstNSI RCATGY 3 cut(s) 39, 397, 754
BstSCI CCNGG 2 cut(s) 762, 991
BstSFI CTRYAG 2 cut(s) 522, 594
BstUI CGCG 2 cut(s) 420, 1020
BstV1I GCAGC 4 cut(s) 766, 779, 788, 1025
BstV2I GAAGAC 1 cut(s) 1065
BstZI CGGCCG 1 cut(s) 398
Bsu36I CCTNAGG 1 cut(s) 819
BsuRI GGCC 4 cut(s) 133, 400, 799, 874
BtgZI GCGATG 1 cut(s) 470
BtsCI GGATG 5 cut(s) 97, 624, 813, 834, 960
BtsIMutI CAGTG 3 cut(s) 339, 960, 1100
BveI ACCTGC 1 cut(s) 946
Cac8I GCNNGC 4 cut(s) 322, 467, 851, 1018
CfoI GCGC 2 cut(s) 378, 1004
Cfr13I GGNCC 2 cut(s) 131, 859
CseI GACGC 2 cut(s) 698, 1045
Csp6I GTAC 4 cut(s) 369, 634, 639, 996
CviAII CATG 8 cut(s) 13, 36, 155, 274, 394, 476, 751, 846
CviQI GTAC 4 cut(s) 369, 634, 639, 996
DdeI CTNAG 7 cut(s) 70, 351, 504, 807, 819, 963, 1027
DpnI GATC 2 cut(s) 111, 482
DpnII GATC 2 cut(s) 109, 480
DraI TTTAAA 1 cut(s) 787
DraIII CACNNNGTG 1 cut(s) 685
EaeI YGGCCR 1 cut(s) 398
EagI CGGCCG 1 cut(s) 398
Eam1104I CTCTTC 1 cut(s) 564
EarI CTCTTC 1 cut(s) 564
Ecl136II GAGCTC 1 cut(s) 152
EclXI CGGCCG 1 cut(s) 398
Eco130I CCWWGG 1 cut(s) 29
Eco147I AGGCCT 1 cut(s) 799
Eco24I GRGCYC 1 cut(s) 154
Eco47I GGWCC 1 cut(s) 859
Eco52I CGGCCG 1 cut(s) 398
Eco53kI GAGCTC 1 cut(s) 152
Eco81I CCTNAGG 1 cut(s) 819
EcoICRI GAGCTC 1 cut(s) 152
EcoNI CCTNNNNNAGG 1 cut(s) 744
EcoO109I RGGNCCY 1 cut(s) 859
EcoRII CCWGG 2 cut(s) 762, 991
EcoT14I CCWWGG 1 cut(s) 29
EcoT38I GRGCYC 1 cut(s) 154
ErhI CCWWGG 1 cut(s) 29
Esp3I CGTCTC 1 cut(s) 1028
FaeI CATG 8 cut(s) 16, 39, 158, 277, 397, 479, 754, 849
FaqI GGGAC 1 cut(s) 619
FatI CATG 8 cut(s) 12, 35, 154, 273, 393, 475, 750, 845
FauNDI CATATG 1 cut(s) 772
Fnu4HI GCNGC 5 cut(s) 398, 768, 777, 780, 1014
FokI GGATG 5 cut(s) 104, 631, 800, 821, 967
FriOI GRGCYC 1 cut(s) 154
Fsp4HI GCNGC 5 cut(s) 398, 768, 777, 780, 1014
FspBI CTAG 1 cut(s) 801
FspI TGCGCA 1 cut(s) 377
GlaI GCGC 2 cut(s) 377, 1003
GluI GCNGC 5 cut(s) 398, 768, 777, 780, 1014
GsuI CTGGAG 2 cut(s) 210, 746
HaeII RGCGCY 1 cut(s) 1005
HaeIII GGCC 4 cut(s) 133, 400, 799, 874
HapII CCGG 1 cut(s) 626
HgaI GACGC 2 cut(s) 698, 1045
HhaI GCGC 2 cut(s) 378, 1004
Hin1I GRCGYC 1 cut(s) 1037
Hin1II CATG 8 cut(s) 16, 39, 158, 277, 397, 479, 754, 849
Hin6I GCGC 2 cut(s) 376, 1002
HinP1I GCGC 2 cut(s) 376, 1002
HinfI GANTC 3 cut(s) 50, 572, 986
HpaII CCGG 1 cut(s) 626
HphI GGTGA 2 cut(s) 155, 352
Hpy166II GTNNAC 2 cut(s) 688, 960
Hpy188I TCNGA 2 cut(s) 86, 808
Hpy188III TCNNGA 6 cut(s) 227, 241, 282, 517, 626, 932
Hpy8I GTNNAC 2 cut(s) 688, 960
HpyAV CCTTC 4 cut(s) 33, 242, 740, 1016
HpyCH4III ACNGT 8 cut(s) 193, 255, 491, 538, 614, 638, 643, 973
HpyCH4V TGCA 7 cut(s) 197, 324, 469, 524, 596, 776, 782
HpyF10VI GCNNNNNNNGC 3 cut(s) 773, 776, 1010
HpyF3I CTNAG 7 cut(s) 70, 351, 504, 807, 819, 963, 1027
Hsp92I GRCGYC 1 cut(s) 1037
Hsp92II CATG 8 cut(s) 16, 39, 158, 277, 397, 479, 754, 849
HspAI GCGC 2 cut(s) 376, 1002
Kpn2I TCCGGA 1 cut(s) 625
Kzo9I GATC 2 cut(s) 109, 480
LmnI GCTCC 3 cut(s) 149, 328, 628
Lsp1109I GCAGC 4 cut(s) 766, 779, 788, 1025
LweI GCATC 2 cut(s) 82, 127
MaeI CTAG 1 cut(s) 801
MaeIII GTNAC 2 cut(s) 346, 643
MalI GATC 2 cut(s) 111, 482
MboI GATC 2 cut(s) 109, 480
MboII GAAGA 3 cut(s) 581, 1070, 1072
MfeI CAATTG 1 cut(s) 705
MhlI GDGCHC 1 cut(s) 154
MluCI AATT 8 cut(s) 138, 298, 542, 705, 734, 877, 891, 1043
MluI ACGCGT 1 cut(s) 418
MlyI GAGTC 2 cut(s) 581, 995
MmeI TCCRAC 1 cut(s) 596
MroI TCCGGA 1 cut(s) 625
MseI TTAA 5 cut(s) 540, 578, 650, 786, 1089
MslI CAYNNNNRTG 1 cut(s) 474
MspA1I CMGCKG 2 cut(s) 74, 779
MspI CCGG 1 cut(s) 626
MspR9I CCNGG 2 cut(s) 764, 993
MunI CAATTG 1 cut(s) 705
Mva1269I GAATGC 1 cut(s) 871
MvaI CCWGG 2 cut(s) 764, 993
MvnI CGCG 2 cut(s) 420, 1020
MwoI GCNNNNNNNGC 3 cut(s) 773, 776, 1010
NdeI CATATG 1 cut(s) 772
NdeII GATC 2 cut(s) 109, 480
NlaIII CATG 8 cut(s) 16, 39, 158, 277, 397, 479, 754, 849
NlaIV GGNNCC 5 cut(s) 10, 319, 330, 624, 861
NmeAIII GCCGAG 2 cut(s) 426, 850
NsbI TGCGCA 1 cut(s) 377
NspI RCATGY 3 cut(s) 39, 397, 754
NspV TTCGAA 1 cut(s) 744
PceI AGGCCT 1 cut(s) 799
PciI ACATGT 1 cut(s) 35
PctI GAATGC 1 cut(s) 871
PfeI GAWTC 1 cut(s) 50
PflMI CCANNNNNTGG 2 cut(s) 140, 685
PkrI GCNGC 5 cut(s) 399, 769, 778, 781, 1015
PleI GAGTC 2 cut(s) 580, 994
PpsI GAGTC 2 cut(s) 580, 994
PpuMI RGGWCCY 1 cut(s) 859
PscI ACATGT 1 cut(s) 35
Psp124BI GAGCTC 1 cut(s) 154
Psp5II RGGWCCY 1 cut(s) 859
Psp6I CCWGG 2 cut(s) 762, 991
PspGI CCWGG 2 cut(s) 762, 991
PspN4I GGNNCC 5 cut(s) 10, 319, 330, 624, 861
PspPI GGNCC 2 cut(s) 131, 859
PspPPI RGGWCCY 1 cut(s) 859
PstI CTGCAG 2 cut(s) 526, 598
PvuII CAGCTG 2 cut(s) 74, 779
RsaI GTAC 4 cut(s) 370, 635, 640, 997
RsaNI GTAC 4 cut(s) 369, 634, 639, 996
RseI CAYNNNNRTG 1 cut(s) 474
SacI GAGCTC 1 cut(s) 154
SaqAI TTAA 5 cut(s) 540, 578, 650, 786, 1089
SatI GCNGC 5 cut(s) 398, 768, 777, 780, 1014
Sau3AI GATC 2 cut(s) 109, 480
Sau96I GGNCC 2 cut(s) 131, 859
ScaI AGTACT 1 cut(s) 640
SchI GAGTC 2 cut(s) 581, 995
ScrFI CCNGG 2 cut(s) 764, 993
SduI GDGCHC 1 cut(s) 154
SfaNI GCATC 2 cut(s) 82, 127
SfcI CTRYAG 2 cut(s) 522, 594
SfuI TTCGAA 1 cut(s) 744
SinI GGWCC 1 cut(s) 859
SmiMI CAYNNNNRTG 1 cut(s) 474
Sse9I AATT 8 cut(s) 138, 298, 542, 705, 734, 877, 891, 1043
SseBI AGGCCT 1 cut(s) 799
SsiI CCGC 2 cut(s) 397, 548
SspI AATATT 1 cut(s) 383
SspMI CTAG 1 cut(s) 801
SstI GAGCTC 1 cut(s) 154
StuI AGGCCT 1 cut(s) 799
StyD4I CCNGG 2 cut(s) 762, 991
StyI CCWWGG 1 cut(s) 29
TaaI ACNGT 8 cut(s) 193, 255, 491, 538, 614, 638, 643, 973
TaqI TCGA 3 cut(s) 281, 744, 906
TasI AATT 8 cut(s) 138, 298, 542, 705, 734, 877, 891, 1043
TatI WGTACW 2 cut(s) 633, 638
TauI GCSGC 1 cut(s) 400
TfiI GAWTC 1 cut(s) 50
Tru1I TTAA 5 cut(s) 540, 578, 650, 786, 1089
Tru9I TTAA 5 cut(s) 540, 578, 650, 786, 1089
TscAI CASTG 3 cut(s) 339, 967, 1100
TseI GCWGC 4 cut(s) 767, 776, 779, 1013
TspDTI ATGAA 2 cut(s) 200, 834
TspGWI ACGGA 1 cut(s) 967
TspRI CASTG 3 cut(s) 339, 967, 1100
Van91I CCANNNNNTGG 2 cut(s) 140, 685
VpaK11BI GGWCC 1 cut(s) 859
XagI CCTNNNNNAGG 1 cut(s) 744
XapI RAATTY 1 cut(s) 298
XceI RCATGY 3 cut(s) 39, 397, 754
XspI CTAG 1 cut(s) 801
ZrmI AGTACT 1 cut(s) 640
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.