Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0010690

Physical Location & Seq

Genomic Coordinates Forward (+)

58632408 .. 58634401

Gene Structure 1994 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004350

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGGTGATAGTTACTGAGCTTTTATTGGGTGGGACATTGCGCAAGTATTGTCTTAACATGCGGCCAAGGTGCTTGGACACACGAGTTGCTGTTGGTTTTGCCCTAGATATTGCTCGTGCAATGGAATGCTTACACTCTCATGGGATCATACACCGAGACTTGAAGCCTGAGAACTTGCTCTTAACTGCAGACCACAAAACTGTTAAACTAGCAGATTTTGGGTTAGCAAGAGAAGAGTCATTAACAGAGATGATGACTGCCGAAACTGGAACATACCGTTGGATGGCCCCAGAGTTGTACAGTACTGTTACGTTAAGGCAGGGAGAGAAGAAGCATTACAACCATAAAGTGGATGCCTATAGCTTTGCAATTGTTTTGTGGGAACTCTTACACAATAAATTGCCTTTTGAAGGCATGTCAAATCTCCAGGCAGCATATGCAGCAGCTTTTAAAAATGTGAGGCCCAGTGCTGACAACCTCCCAGAGGAGTTGAATCTCATCCTAACTTCGTGCTGGCAGGAGGATGCAAATGCTCGACCTAATTTCAATCAGATAATTCAAATGCTACTAGATTATCTTTACACCATAGCTCCTCCTGAACCTGCGATTCCTTCTCGGATTTTCACCGAGAACACTGTCTTGCCTCCAGAGTCCCCTGGTACAAGCTCTTTGATGGCAGTACGGGATGATGGGGAGACACCCAAAGCACAAACGGAAGATGAGCCAAAAGGATTTTTCTTCTGCTTTAAACAGTGCTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

254

Amino Acids

28.66

Weight (kDa)

5.54

Isoelectric Point (pI)

50.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	1 - 188	2.5e-37	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	2 - 189	5.6e-40	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010690)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50180
fragaria_vesca	FvH4_5g06280 FvH4_5g06280 FvH4_5g06280 FvH4_5g06280
malus_domestica	MD06G1165800.v1.1 MD14G1171600.v1.1
prunus_persica	Prupe.5G165700_v2.0.a1 Prupe.5G165700_v2.0.a1
pyrus_communis	pycom06g14830 pycom14g14330
rosa_chinensis	RchiOBHm_Chr7g0192581
rosa_laevigata	RLG00000004350
rosa_rugosa	Rorug07G0002300 Rorug07G0002400
rosa_samantha	Rh7AG126800 Rh7BG129000 Rh7CG130900 Rh7DG130200
rosa_wichuraiana	Rw7G010900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	41
Acc36I	ACCTGC	1 cut(s)	610
AccB7I	CCANNNNNTGG	1 cut(s)	349
AciI	CCGC	1 cut(s)	61
AclWI	GGATC	1 cut(s)	152
AcoI	YGGCCR	1 cut(s)	62
AfaI	GTAC	4 cut(s)	299, 304, 661, 681
AfiI	CCNNNNNNNGG	4 cut(s)	283, 349, 410, 484
AgsI	TTSAA	5 cut(s)	163, 410, 493, 547, 560
AjnI	CCWGG	2 cut(s)	426, 655
AjuI	GAANNNNNNNTTGG	2 cut(s)	262, 294
AluBI	AGCT	5 cut(s)	19, 363, 446, 590, 666
AluI	AGCT	5 cut(s)	19, 363, 446, 590, 666
Alw26I	GTCTC	2 cut(s)	150, 689
AlwI	GGATC	1 cut(s)	152
AoxI	GGCC	3 cut(s)	62, 285, 461
ApeKI	GCWGC	3 cut(s)	431, 440, 443
AspLEI	GCGC	1 cut(s)	42
AspS9I	GGNCC	2 cut(s)	286, 462
AsuHPI	GGTGA	2 cut(s)	16, 616
BarI	GAAGNNNNNNTAC	2 cut(s)	320, 352
BauI	CACGAG	2 cut(s)	81, 114
BbvI	GCAGC	3 cut(s)	443, 452, 455
BccI	CCATC	3 cut(s)	277, 667, 683
BciT130I	CCWGG	2 cut(s)	428, 657
BcoDI	GTCTC	2 cut(s)	150, 689
BfaI	CTAG	3 cut(s)	104, 209, 569
BfmI	CTRYAG	2 cut(s)	186, 358
BfuAI	ACCTGC	1 cut(s)	610
BisI	GCNGC	4 cut(s)	62, 432, 441, 444
BlsI	GCNGC	4 cut(s)	63, 433, 442, 445
BmcAI	AGTACT	1 cut(s)	304
Bme1390I	CCNGG	2 cut(s)	428, 657
BmgT120I	GGNCC	2 cut(s)	286, 462
BmiI	GGNNCC	1 cut(s)	288
BmrFI	CCNGG	2 cut(s)	428, 657
BmrI	ACTGGG	1 cut(s)	459
BmsI	GCATC	2 cut(s)	343, 514
BmuI	ACTGGG	1 cut(s)	459
BpmI	CTGGAG	2 cut(s)	410, 630
BsaJI	CCNNGG	2 cut(s)	65, 655
BsaXI	ACNNNNNCTCC	2 cut(s)	574, 604
Bsc4I	CCNNNNNNNGG	4 cut(s)	283, 349, 410, 484
Bse1I	ACTGG	2 cut(s)	271, 465
Bse3DI	GCAATG	2 cut(s)	35, 126
BseBI	CCWGG	2 cut(s)	428, 657
BseDI	CCNNGG	2 cut(s)	65, 655
BseGI	GGATG	5 cut(s)	288, 358, 498, 529, 691
BseLI	CCNNNNNNNGG	4 cut(s)	283, 349, 410, 484
BseMI	GCAATG	2 cut(s)	35, 126
BseMII	CTCAG	2 cut(s)	6, 159
BseNI	ACTGG	2 cut(s)	271, 465
BseRI	GAGGAG	2 cut(s)	500, 582
BseXI	GCAGC	3 cut(s)	443, 452, 455
BshFI	GGCC	3 cut(s)	64, 287, 463
BslFI	GGGAC	2 cut(s)	46, 637
BslI	CCNNNNNNNGG	4 cut(s)	283, 349, 410, 484
BsmAI	GTCTC	2 cut(s)	150, 689
BsmFI	GGGAC	2 cut(s)	46, 637
BsmI	GAATGC	1 cut(s)	131
BsnI	GGCC	3 cut(s)	64, 287, 463
Bsp1407I	TGTACA	1 cut(s)	297
Bsp143I	GATC	1 cut(s)	144
BspACI	CCGC	1 cut(s)	61
BspANI	GGCC	3 cut(s)	64, 287, 463
BspCNI	CTCAG	2 cut(s)	7, 160
BspLI	GGNNCC	1 cut(s)	288
BspMAI	CTGCAG	1 cut(s)	190
BspMI	ACCTGC	1 cut(s)	610
BspPI	GGATC	1 cut(s)	152
BsrDI	GCAATG	2 cut(s)	35, 126
BsrGI	TGTACA	1 cut(s)	297
BsrI	ACTGG	2 cut(s)	271, 465
BssECI	CCNNGG	2 cut(s)	65, 655
BssMI	GATC	1 cut(s)	144
BssSI	CACGAG	2 cut(s)	81, 114
BssT1I	CCWWGG	1 cut(s)	65
Bst2BI	CACGAG	2 cut(s)	81, 114
Bst2UI	CCWGG	2 cut(s)	428, 657
Bst4CI	ACNGT	6 cut(s)	202, 278, 302, 307, 637, 753
Bst6I	CTCTTC	1 cut(s)	228
BstAPI	GCANNNNNTGC	1 cut(s)	437
BstAUI	TGTACA	1 cut(s)	297
BstC8I	GCNNGC	1 cut(s)	515
BstDEI	CTNAG	2 cut(s)	15, 168
BstENI	CCTNNNNNAGG	2 cut(s)	408, 482
BstF5I	GGATG	5 cut(s)	288, 358, 498, 529, 691
BstHHI	GCGC	1 cut(s)	42
BstKTI	GATC	1 cut(s)	147
BstMAI	GTCTC	2 cut(s)	150, 689
BstMBI	GATC	1 cut(s)	144
BstMWI	GCNNNNNNNGC	2 cut(s)	437, 440
BstNI	CCWGG	2 cut(s)	428, 657
BstNSI	RCATGY	2 cut(s)	61, 418
BstSCI	CCNGG	2 cut(s)	426, 655
BstSFI	CTRYAG	2 cut(s)	186, 358
BstV1I	GCAGC	3 cut(s)	443, 452, 455
BsuRI	GGCC	3 cut(s)	64, 287, 463
BtsCI	GGATG	5 cut(s)	288, 358, 498, 529, 691
BtsIMutI	CAGTG	3 cut(s)	472, 633, 758
BveI	ACCTGC	1 cut(s)	610
Cac8I	GCNNGC	1 cut(s)	515
CfoI	GCGC	1 cut(s)	42
Cfr13I	GGNCC	2 cut(s)	286, 462
Csp6I	GTAC	4 cut(s)	298, 303, 660, 680
CviAII	CATG	3 cut(s)	58, 140, 415
CviQI	GTAC	4 cut(s)	298, 303, 660, 680
DdeI	CTNAG	2 cut(s)	15, 168
DpnI	GATC	1 cut(s)	146
DpnII	GATC	1 cut(s)	144
DraI	TTTAAA	2 cut(s)	451, 748
EaeI	YGGCCR	1 cut(s)	62
Eam1104I	CTCTTC	1 cut(s)	228
EarI	CTCTTC	1 cut(s)	228
Eco130I	CCWWGG	1 cut(s)	65
EcoNI	CCTNNNNNAGG	2 cut(s)	408, 482
EcoRII	CCWGG	2 cut(s)	426, 655
EcoT14I	CCWWGG	1 cut(s)	65
ErhI	CCWWGG	1 cut(s)	65
FaeI	CATG	3 cut(s)	61, 143, 418
FaqI	GGGAC	2 cut(s)	46, 637
FatI	CATG	3 cut(s)	57, 139, 414
FauNDI	CATATG	1 cut(s)	436
Fnu4HI	GCNGC	4 cut(s)	62, 432, 441, 444
FokI	GGATG	5 cut(s)	295, 365, 485, 536, 698
Fsp4HI	GCNGC	4 cut(s)	62, 432, 441, 444
FspBI	CTAG	3 cut(s)	104, 209, 569
FspI	TGCGCA	1 cut(s)	41
GlaI	GCGC	1 cut(s)	41
GluI	GCNGC	4 cut(s)	62, 432, 441, 444
GsuI	CTGGAG	2 cut(s)	410, 630
HaeIII	GGCC	3 cut(s)	64, 287, 463
HhaI	GCGC	1 cut(s)	42
Hin1II	CATG	3 cut(s)	61, 143, 418
Hin6I	GCGC	1 cut(s)	40
HinP1I	GCGC	1 cut(s)	40
HinfI	GANTC	4 cut(s)	236, 493, 607, 650
HphI	GGTGA	2 cut(s)	16, 616
Hpy188I	TCNGA	2 cut(s)	552, 618
Hpy188III	TCNNGA	2 cut(s)	596, 647
HpyAV	CCTTC	2 cut(s)	404, 621
HpyCH4III	ACNGT	6 cut(s)	202, 278, 302, 307, 637, 753
HpyCH4IV	ACGT	1 cut(s)	311
HpyCH4V	TGCA	5 cut(s)	119, 188, 368, 440, 527
HpyF10VI	GCNNNNNNNGC	2 cut(s)	437, 440
HpyF3I	CTNAG	2 cut(s)	15, 168
HpySE526I	ACGT	1 cut(s)	311
Hsp92II	CATG	3 cut(s)	61, 143, 418
HspAI	GCGC	1 cut(s)	40
Kzo9I	GATC	1 cut(s)	144
LmnI	GCTCC	1 cut(s)	595
Lsp1109I	GCAGC	3 cut(s)	443, 452, 455
LweI	GCATC	2 cut(s)	343, 514
MaeI	CTAG	3 cut(s)	104, 209, 569
MaeII	ACGT	1 cut(s)	311
MaeIII	GTNAC	2 cut(s)	10, 307
MalI	GATC	1 cut(s)	146
MboI	GATC	1 cut(s)	144
MboII	GAAGA	4 cut(s)	245, 340, 728, 730
MfeI	CAATTG	1 cut(s)	369
MluCI	AATT	4 cut(s)	369, 398, 541, 555
MlyI	GAGTC	2 cut(s)	245, 659
MmeI	TCCRAC	1 cut(s)	260
MnlI	CCTC	6 cut(s)	453, 478, 488, 514, 603, 654
MseI	TTAA	7 cut(s)	54, 182, 204, 242, 314, 450, 747
MslI	CAYNNNNRTG	1 cut(s)	138
MspR9I	CCNGG	2 cut(s)	428, 657
MunI	CAATTG	1 cut(s)	369
Mva1269I	GAATGC	1 cut(s)	131
MvaI	CCWGG	2 cut(s)	428, 657
MwoI	GCNNNNNNNGC	2 cut(s)	437, 440
NdeI	CATATG	1 cut(s)	436
NdeII	GATC	1 cut(s)	144
NlaIII	CATG	3 cut(s)	61, 143, 418
NlaIV	GGNNCC	1 cut(s)	288
NsbI	TGCGCA	1 cut(s)	41
NspI	RCATGY	2 cut(s)	61, 418
PctI	GAATGC	1 cut(s)	131
PfeI	GAWTC	2 cut(s)	493, 607
PflMI	CCANNNNNTGG	1 cut(s)	349
PkrI	GCNGC	4 cut(s)	63, 433, 442, 445
PleI	GAGTC	2 cut(s)	244, 658
PpsI	GAGTC	2 cut(s)	244, 658
Psp6I	CCWGG	2 cut(s)	426, 655
PspGI	CCWGG	2 cut(s)	426, 655
PspN4I	GGNNCC	1 cut(s)	288
PspPI	GGNCC	2 cut(s)	286, 462
PstI	CTGCAG	1 cut(s)	190
RsaI	GTAC	4 cut(s)	299, 304, 661, 681
RsaNI	GTAC	4 cut(s)	298, 303, 660, 680
RseI	CAYNNNNRTG	1 cut(s)	138
SaqAI	TTAA	7 cut(s)	54, 182, 204, 242, 314, 450, 747
SatI	GCNGC	4 cut(s)	62, 432, 441, 444
Sau3AI	GATC	1 cut(s)	144
Sau96I	GGNCC	2 cut(s)	286, 462
ScaI	AGTACT	1 cut(s)	304
SchI	GAGTC	2 cut(s)	245, 659
ScrFI	CCNGG	2 cut(s)	428, 657
SfaNI	GCATC	2 cut(s)	343, 514
SfcI	CTRYAG	2 cut(s)	186, 358
SmiMI	CAYNNNNRTG	1 cut(s)	138
Sse9I	AATT	4 cut(s)	369, 398, 541, 555
SsiI	CCGC	1 cut(s)	61
SspMI	CTAG	3 cut(s)	104, 209, 569
StyD4I	CCNGG	2 cut(s)	426, 655
StyI	CCWWGG	1 cut(s)	65
TaaI	ACNGT	6 cut(s)	202, 278, 302, 307, 637, 753
TaiI	ACGT	1 cut(s)	314
TaqI	TCGA	1 cut(s)	535
TasI	AATT	4 cut(s)	369, 398, 541, 555
TatI	WGTACW	2 cut(s)	297, 302
TauI	GCSGC	1 cut(s)	64
TfiI	GAWTC	2 cut(s)	493, 607
Tru1I	TTAA	7 cut(s)	54, 182, 204, 242, 314, 450, 747
Tru9I	TTAA	7 cut(s)	54, 182, 204, 242, 314, 450, 747
TscAI	CASTG	3 cut(s)	472, 640, 758
TseI	GCWGC	3 cut(s)	431, 440, 443
TspGWI	ACGGA	1 cut(s)	728
TspRI	CASTG	3 cut(s)	472, 640, 758
Van91I	CCANNNNNTGG	1 cut(s)	349
XagI	CCTNNNNNAGG	2 cut(s)	408, 482
XceI	RCATGY	2 cut(s)	61, 418
XspI	CTAG	3 cut(s)	104, 209, 569
ZrmI	AGTACT	1 cut(s)	304

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.