Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0010690

Physical Location & Seq

Genomic Coordinates Forward (+)

3701262 .. 3704691

Gene Structure 3430 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g06280.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGGAATCTGGGAGTAGGTTTTACTCAGGTGATGAGTTCAGATTGGATTCCAAATGGCTGATTGATCCTAAGCATCTGTTTGTTGGGCCAAGAATTGGAGAGGGAGCTCATGCCAAAGTGTATGAGGGCAAATACAAAAACCAGACTGTTGCAATCAAAGTTCTTCATAAAGGAGAAACTCCAGAGGAGATCACCAAGAGACAAGGGCGGTTTGCTAGAGAGGTTGAAATGTTGTCTAGAGTTCAGCATAAGAATTTAGTGAAGTTTATTGGTGCCTGCATGGAGCCAGTAATGGTGATAGTTACTGAGCTTTTATTGGGTGGGACATTGCGTAAATATTGCCTTAACATGCGGCCAAGGTGCTTGGACACACGAGTTGCTGTTGGTTTTGCCCTAGATATTGCTCGTGCAATGGAATGCTTACACTCTCATGGGATCATACACCGTGACCTGAAGCCTGAGAACTTACTCCTGACTGCGGACCACAAAACAGTTAAACTAGCAGATTTTGGGTTAGCAAGAGAAGAGTCATTAACAGAGATGATGACTGCTGAAACTGGAACATACCGATGGATGGCTCCAGAGTTGTACAGTACTGTTACGTTAAGGCAGGGAGAGAAGAAGCATTACAACCATAAAGTGGATGCCTATAGCTTTGCCATTGTTTTGTGGGAACTCTTACACAATAAATTGCCTTTTGAAGGCATGTCAAATCTCCAGGCAGCATATGCAGCAGCTTTTAAAAATGTGAGGCCCAGTGCTGACAACCTCCCAGAGGAGTTGAATCTCATCCTAACTTCCTGCTGGCAGGAGGATGCAAATGCTCGACCCAATTTCAGCCAGATAATTCAAATGCTACTGGATTATCTTTACACCATAGCTCCTCCTGAGCCTGCGATTCCTTCTCGGATTTTCACCGAGAACACTGTCTTGGCTCCAGAGTCACCTGGTACAAGCTCCTTGATGGCAGTACGGGATGATGGGGAGACGCCCAAAGCACAAATGGAAGATGAGCCAAGAGGATTTTTCTTCTGCTTTAAACAGTGTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

351

Amino Acids

39.78

Weight (kDa)

6.43

Isoelectric Point (pI)

46.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	48 - 288	8.7e-53	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	48 - 287	1.6e-47	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010690)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50180
fragaria_vesca	FvH4_5g06280 FvH4_5g06280 FvH4_5g06280 FvH4_5g06280
malus_domestica	MD06G1165800.v1.1 MD14G1171600.v1.1
prunus_persica	Prupe.5G165700_v2.0.a1 Prupe.5G165700_v2.0.a1
pyrus_communis	pycom06g14830 pycom14g14330
rosa_chinensis	RchiOBHm_Chr7g0192581
rosa_laevigata	RLG00000004350
rosa_rugosa	Rorug07G0002300 Rorug07G0002400
rosa_samantha	Rh7AG126800 Rh7BG129000 Rh7CG130900 Rh7DG130200
rosa_wichuraiana	Rw7G010900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	272
AccB7I	CCANNNNNTGG	2 cut(s)	95, 640
AciI	CCGC	3 cut(s)	208, 352, 479
AclWI	GGATC	2 cut(s)	59, 443
AcoI	YGGCCR	1 cut(s)	353
AcsI	RAATTY	1 cut(s)	253
AcuI	CTGAAG	1 cut(s)	473
AcyI	GRCGYC	1 cut(s)	989
AfaI	GTAC	4 cut(s)	590, 595, 952, 972
AfiI	CCNNNNNNNGG	6 cut(s)	95, 478, 574, 640, 701, 775
AgsI	TTSAA	4 cut(s)	227, 701, 784, 851
AjnI	CCWGG	2 cut(s)	717, 946
AjuI	GAANNNNNNNTTGG	2 cut(s)	914, 946
AluBI	AGCT	6 cut(s)	107, 310, 654, 737, 881, 957
AluI	AGCT	6 cut(s)	107, 310, 654, 737, 881, 957
Alw21I	GWGCWC	1 cut(s)	109
Alw26I	GTCTC	2 cut(s)	193, 980
AlwI	GGATC	2 cut(s)	59, 443
AoxI	GGCC	3 cut(s)	86, 353, 752
ApeKI	GCWGC	3 cut(s)	722, 731, 734
ApoI	RAATTY	1 cut(s)	253
AspS9I	GGNCC	3 cut(s)	86, 481, 753
AsuHPI	GGTGA	5 cut(s)	41, 184, 307, 907, 936
AvaII	GGWCC	1 cut(s)	481
BanI	GGYRCC	1 cut(s)	272
BanII	GRGCYC	1 cut(s)	109
BarI	GAAGNNNNNNTAC	2 cut(s)	611, 643
BauI	CACGAG	2 cut(s)	372, 405
Bbv12I	GWGCWC	1 cut(s)	109
BbvI	GCAGC	3 cut(s)	734, 743, 746
BccI	CCATC	4 cut(s)	564, 568, 958, 974
BciT130I	CCWGG	2 cut(s)	719, 948
BcoDI	GTCTC	2 cut(s)	193, 980
BfaI	CTAG	4 cut(s)	216, 237, 395, 500
BfmI	CTRYAG	1 cut(s)	649
BisI	GCNGC	4 cut(s)	353, 723, 732, 735
BlsI	GCNGC	4 cut(s)	354, 724, 733, 736
BmcAI	AGTACT	1 cut(s)	595
Bme1390I	CCNGG	2 cut(s)	719, 948
Bme18I	GGWCC	1 cut(s)	481
BmgT120I	GGNCC	3 cut(s)	86, 481, 753
BmiI	GGNNCC	4 cut(s)	274, 285, 579, 936
BmrFI	CCNGG	2 cut(s)	719, 948
BmrI	ACTGGG	1 cut(s)	750
BmsI	GCATC	3 cut(s)	82, 634, 805
BmuI	ACTGGG	1 cut(s)	750
BpmI	CTGGAG	4 cut(s)	165, 564, 701, 921
Bpu10I	CCTNAGC	2 cut(s)	69, 888
BsaHI	GRCGYC	1 cut(s)	989
BsaJI	CCNNGG	1 cut(s)	356
BsaXI	ACNNNNNCTCC	2 cut(s)	865, 895
Bsc4I	CCNNNNNNNGG	6 cut(s)	95, 478, 574, 640, 701, 775
Bse1I	ACTGG	4 cut(s)	287, 562, 756, 864
Bse3DI	GCAATG	2 cut(s)	326, 417
BseBI	CCWGG	2 cut(s)	719, 948
BseDI	CCNNGG	1 cut(s)	356
BseGI	GGATG	5 cut(s)	579, 649, 789, 820, 982
BseLI	CCNNNNNNNGG	6 cut(s)	95, 478, 574, 640, 701, 775
BseMI	GCAATG	2 cut(s)	326, 417
BseMII	CTCAG	4 cut(s)	39, 297, 450, 879
BseNI	ACTGG	4 cut(s)	287, 562, 756, 864
BseRI	GAGGAG	3 cut(s)	200, 791, 873
BseXI	GCAGC	3 cut(s)	734, 743, 746
BshFI	GGCC	3 cut(s)	88, 355, 754
BshNI	GGYRCC	1 cut(s)	272
BsiHKAI	GWGCWC	1 cut(s)	109
BslFI	GGGAC	1 cut(s)	337
BslI	CCNNNNNNNGG	6 cut(s)	95, 478, 574, 640, 701, 775
BsmAI	GTCTC	2 cut(s)	193, 980
BsmBI	CGTCTC	1 cut(s)	980
BsmFI	GGGAC	1 cut(s)	337
BsmI	GAATGC	1 cut(s)	422
BsnI	GGCC	3 cut(s)	88, 355, 754
Bsp1286I	GDGCHC	1 cut(s)	109
Bsp1407I	TGTACA	1 cut(s)	588
Bsp143I	GATC	3 cut(s)	64, 189, 435
BspACI	CCGC	3 cut(s)	208, 352, 479
BspANI	GGCC	3 cut(s)	88, 355, 754
BspCNI	CTCAG	4 cut(s)	38, 298, 451, 880
BspLI	GGNNCC	4 cut(s)	274, 285, 579, 936
BspPI	GGATC	2 cut(s)	59, 443
BspT107I	GGYRCC	1 cut(s)	272
BsrDI	GCAATG	2 cut(s)	326, 417
BsrGI	TGTACA	1 cut(s)	588
BsrI	ACTGG	4 cut(s)	287, 562, 756, 864
BssECI	CCNNGG	1 cut(s)	356
BssMI	GATC	3 cut(s)	64, 189, 435
BssNI	GRCGYC	1 cut(s)	989
BssSI	CACGAG	2 cut(s)	372, 405
BssT1I	CCWWGG	1 cut(s)	356
Bst2BI	CACGAG	2 cut(s)	372, 405
Bst2UI	CCWGG	2 cut(s)	719, 948
Bst4CI	ACNGT	7 cut(s)	148, 446, 493, 593, 598, 928, 1044
Bst6I	CTCTTC	1 cut(s)	519
BstACI	GRCGYC	1 cut(s)	989
BstAPI	GCANNNNNTGC	1 cut(s)	728
BstAUI	TGTACA	1 cut(s)	588
BstC8I	GCNNGC	3 cut(s)	277, 806, 894
BstDEI	CTNAG	5 cut(s)	25, 69, 306, 459, 888
BstENI	CCTNNNNNAGG	2 cut(s)	699, 773
BstF5I	GGATG	5 cut(s)	579, 649, 789, 820, 982
BstKTI	GATC	3 cut(s)	67, 192, 438
BstMAI	GTCTC	2 cut(s)	193, 980
BstMBI	GATC	3 cut(s)	64, 189, 435
BstMWI	GCNNNNNNNGC	2 cut(s)	728, 731
BstNI	CCWGG	2 cut(s)	719, 948
BstNSI	RCATGY	2 cut(s)	352, 709
BstSCI	CCNGG	2 cut(s)	717, 946
BstSFI	CTRYAG	1 cut(s)	649
BstV1I	GCAGC	3 cut(s)	734, 743, 746
BsuRI	GGCC	3 cut(s)	88, 355, 754
BtsCI	GGATG	5 cut(s)	579, 649, 789, 820, 982
BtsIMutI	CAGTG	3 cut(s)	763, 924, 1049
Cac8I	GCNNGC	3 cut(s)	277, 806, 894
Cfr13I	GGNCC	3 cut(s)	86, 481, 753
CseI	GACGC	1 cut(s)	997
CsiI	ACCWGGT	1 cut(s)	946
Csp6I	GTAC	4 cut(s)	589, 594, 951, 971
CviAII	CATG	5 cut(s)	110, 280, 349, 431, 706
CviQI	GTAC	4 cut(s)	589, 594, 951, 971
DdeI	CTNAG	5 cut(s)	25, 69, 306, 459, 888
DpnI	GATC	3 cut(s)	66, 191, 437
DpnII	GATC	3 cut(s)	64, 189, 435
DraI	TTTAAA	2 cut(s)	742, 1039
EaeI	YGGCCR	1 cut(s)	353
Eam1104I	CTCTTC	1 cut(s)	519
EarI	CTCTTC	1 cut(s)	519
Ecl136II	GAGCTC	1 cut(s)	107
Eco130I	CCWWGG	1 cut(s)	356
Eco24I	GRGCYC	1 cut(s)	109
Eco47I	GGWCC	1 cut(s)	481
Eco53kI	GAGCTC	1 cut(s)	107
Eco57I	CTGAAG	1 cut(s)	473
EcoICRI	GAGCTC	1 cut(s)	107
EcoNI	CCTNNNNNAGG	2 cut(s)	699, 773
EcoRII	CCWGG	2 cut(s)	717, 946
EcoT14I	CCWWGG	1 cut(s)	356
EcoT38I	GRGCYC	1 cut(s)	109
ErhI	CCWWGG	1 cut(s)	356
Esp3I	CGTCTC	1 cut(s)	980
FaeI	CATG	5 cut(s)	113, 283, 352, 434, 709
FaqI	GGGAC	1 cut(s)	337
FatI	CATG	5 cut(s)	109, 279, 348, 430, 705
FauNDI	CATATG	1 cut(s)	727
Fnu4HI	GCNGC	4 cut(s)	353, 723, 732, 735
FokI	GGATG	5 cut(s)	586, 656, 776, 827, 989
FriOI	GRGCYC	1 cut(s)	109
Fsp4HI	GCNGC	4 cut(s)	353, 723, 732, 735
FspBI	CTAG	4 cut(s)	216, 237, 395, 500
GluI	GCNGC	4 cut(s)	353, 723, 732, 735
GsuI	CTGGAG	4 cut(s)	165, 564, 701, 921
HaeIII	GGCC	3 cut(s)	88, 355, 754
HgaI	GACGC	1 cut(s)	997
Hin1I	GRCGYC	1 cut(s)	989
Hin1II	CATG	5 cut(s)	113, 283, 352, 434, 709
HinfI	GANTC	6 cut(s)	5, 47, 527, 784, 898, 941
HphI	GGTGA	5 cut(s)	41, 184, 307, 907, 936
Hpy188I	TCNGA	2 cut(s)	41, 909
Hpy188III	TCNNGA	6 cut(s)	182, 237, 472, 581, 887, 938
HpyAV	CCTTC	2 cut(s)	695, 912
HpyCH4III	ACNGT	7 cut(s)	148, 446, 493, 593, 598, 928, 1044
HpyCH4IV	ACGT	1 cut(s)	602
HpyCH4V	TGCA	5 cut(s)	152, 279, 410, 731, 818
HpyF10VI	GCNNNNNNNGC	2 cut(s)	728, 731
HpyF3I	CTNAG	5 cut(s)	25, 69, 306, 459, 888
HpySE526I	ACGT	1 cut(s)	602
Hsp92I	GRCGYC	1 cut(s)	989
Hsp92II	CATG	5 cut(s)	113, 283, 352, 434, 709
Kzo9I	GATC	3 cut(s)	64, 189, 435
LmnI	GCTCC	6 cut(s)	104, 283, 583, 886, 940, 962
Lsp1109I	GCAGC	3 cut(s)	734, 743, 746
LweI	GCATC	3 cut(s)	82, 634, 805
MabI	ACCWGGT	1 cut(s)	946
MaeI	CTAG	4 cut(s)	216, 237, 395, 500
MaeII	ACGT	1 cut(s)	602
MaeIII	GTNAC	4 cut(s)	301, 446, 598, 942
MalI	GATC	3 cut(s)	66, 191, 437
MboI	GATC	3 cut(s)	64, 189, 435
MboII	GAAGA	5 cut(s)	155, 536, 631, 1019, 1021
MhlI	GDGCHC	1 cut(s)	109
MluCI	AATT	5 cut(s)	93, 253, 689, 832, 846
MlyI	GAGTC	2 cut(s)	536, 950
MseI	TTAA	6 cut(s)	345, 495, 533, 605, 741, 1038
MslI	CAYNNNNRTG	2 cut(s)	429, 568
MspR9I	CCNGG	2 cut(s)	719, 948
Mva1269I	GAATGC	1 cut(s)	422
MvaI	CCWGG	2 cut(s)	719, 948
MwoI	GCNNNNNNNGC	2 cut(s)	728, 731
NdeI	CATATG	1 cut(s)	727
NdeII	GATC	3 cut(s)	64, 189, 435
NlaIII	CATG	5 cut(s)	113, 283, 352, 434, 709
NlaIV	GGNNCC	4 cut(s)	274, 285, 579, 936
NmuCI	GTSAC	2 cut(s)	446, 942
NspI	RCATGY	2 cut(s)	352, 709
PctI	GAATGC	1 cut(s)	422
PfeI	GAWTC	4 cut(s)	5, 47, 784, 898
PflMI	CCANNNNNTGG	2 cut(s)	95, 640
PkrI	GCNGC	4 cut(s)	354, 724, 733, 736
PleI	GAGTC	2 cut(s)	535, 949
PpsI	GAGTC	2 cut(s)	535, 949
Psp124BI	GAGCTC	1 cut(s)	109
Psp6I	CCWGG	2 cut(s)	717, 946
PspGI	CCWGG	2 cut(s)	717, 946
PspN4I	GGNNCC	4 cut(s)	274, 285, 579, 936
PspPI	GGNCC	3 cut(s)	86, 481, 753
RsaI	GTAC	4 cut(s)	590, 595, 952, 972
RsaNI	GTAC	4 cut(s)	589, 594, 951, 971
RseI	CAYNNNNRTG	2 cut(s)	429, 568
SacI	GAGCTC	1 cut(s)	109
SaqAI	TTAA	6 cut(s)	345, 495, 533, 605, 741, 1038
SatI	GCNGC	4 cut(s)	353, 723, 732, 735
Sau3AI	GATC	3 cut(s)	64, 189, 435
Sau96I	GGNCC	3 cut(s)	86, 481, 753
ScaI	AGTACT	1 cut(s)	595
SchI	GAGTC	2 cut(s)	536, 950
ScrFI	CCNGG	2 cut(s)	719, 948
SduI	GDGCHC	1 cut(s)	109
SexAI	ACCWGGT	1 cut(s)	946
SfaNI	GCATC	3 cut(s)	82, 634, 805
SfcI	CTRYAG	1 cut(s)	649
SinI	GGWCC	1 cut(s)	481
SmiMI	CAYNNNNRTG	2 cut(s)	429, 568
Sse9I	AATT	5 cut(s)	93, 253, 689, 832, 846
SsiI	CCGC	3 cut(s)	208, 352, 479
SspI	AATATT	1 cut(s)	338
SspMI	CTAG	4 cut(s)	216, 237, 395, 500
SstI	GAGCTC	1 cut(s)	109
StyD4I	CCNGG	2 cut(s)	717, 946
StyI	CCWWGG	1 cut(s)	356
TaaI	ACNGT	7 cut(s)	148, 446, 493, 593, 598, 928, 1044
TaiI	ACGT	1 cut(s)	605
TaqI	TCGA	1 cut(s)	826
TasI	AATT	5 cut(s)	93, 253, 689, 832, 846
TatI	WGTACW	2 cut(s)	588, 593
TauI	GCSGC	1 cut(s)	355
TfiI	GAWTC	4 cut(s)	5, 47, 784, 898
Tru1I	TTAA	6 cut(s)	345, 495, 533, 605, 741, 1038
Tru9I	TTAA	6 cut(s)	345, 495, 533, 605, 741, 1038
TscAI	CASTG	3 cut(s)	763, 931, 1049
TseFI	GTSAC	2 cut(s)	446, 942
TseI	GCWGC	3 cut(s)	722, 731, 734
Tsp45I	GTSAC	2 cut(s)	446, 942
TspDTI	ATGAA	1 cut(s)	155
TspRI	CASTG	3 cut(s)	763, 931, 1049
Van91I	CCANNNNNTGG	2 cut(s)	95, 640
VpaK11BI	GGWCC	1 cut(s)	481
XagI	CCTNNNNNAGG	2 cut(s)	699, 773
XapI	RAATTY	1 cut(s)	253
XbaI	TCTAGA	1 cut(s)	236
XceI	RCATGY	2 cut(s)	352, 709
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1000
XspI	CTAG	4 cut(s)	216, 237, 395, 500
ZrmI	AGTACT	1 cut(s)	595

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.