Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0010690

Physical Location & Seq

Genomic Coordinates Reverse (-)

9524454 .. 9530531

Gene Structure 6078 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG129000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGAGCTTTGTAAAGCTTTCCCTTTTCTGGGTTCTAATATTTGTCTTATTTTGCTATGGTATAGAAGCTGAATTCATTCCATTTTGTAGAAAGATGGAATCTGGGAGTAGGTTTTACTCTGGTGATGAGTTCAGATTGGATTCCAAATGGCTGATTGATCCTAAGCATCTGTTTGTTGGGCCAAGAATTGGAGAGGGAGCTCATGCCAAAGTGTATGAGGGCAAATACAAAAACCAGACTGTTGCAATTAAAGTTCTACATAAAGGAGAAACTCCAGAAGAGATCACCAAGAGACAAGGGCGGTTTGCCAGAGAGGTTGAAATGTTGTCTAGAGTTCAGCATAAGAATTTAGTGAAGTTTATTGGTGCCTGCATGGAGCCAGTAATGGTAATAGTTACTGAGCTTTTATTGGGTGGGACATTGCGCAAGTATTGTCTTAACATGCGGCCAAGGTGCTTGGACGCACGAGTTGCTGTTGGTTTTGCCCTAGATATTGCTCGTGCAATGGAATGCTTACACTCTCATGGGATCATACACCGTGACTTGAAGCCTGAGAACTTGCTCTTGACTGCAGACCACAAAACTGTTAAACTAGCAGATTTTGGGTTAGCAAGAGAAGAGTCATTAACAGAGATGATGACTGCCGAAACTGGAACATACCGTTGGATGGCTCCAGAGTTGTACAGTACTGTTACTTTAAGGCAGGGAGAGAAGAAGCATTACAACCATAAAGTGGATGCCTATAGCTTTGCAATTGTTTTGTGGGAACTCTTAAACAATAAATTGCCTTTTGAAGGCATGTCAAATCTCCAGGCAGCATATGCTGCAGCTTTTAAAAATGTGAGGCCCAGTGCTGACAACCTCCCAGAGGAGTTGAATCTCATCCTAACCTCGTGCTGGCAGGAGGACGCAAATGCTCGACCTAATTTCAGTCAGATAATTCAAATGCTACTAGATTATCTTTACACCATAGCTCCTCCTGAACCTGCGATTCCTCCTCGGATTTTCACCGAGAACACTGTCTTGCCTCCAGAGTCCCCTGGTACAAGCTCTTTGATGGCAGTACGTGATGATGGGGAGACACCCAAAGCACAAACGGAAGATGAGCCAAAAGGATTTTTCTTCTGCTTTAGACAGTGCTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

381

Amino Acids

43.46

Weight (kDa)

6.57

Isoelectric Point (pI)

46.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	61 - 316	6.4e-52	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	62 - 317	3.6e-57	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010690)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50180
fragaria_vesca	FvH4_5g06280 FvH4_5g06280 FvH4_5g06280 FvH4_5g06280
malus_domestica	MD06G1165800.v1.1 MD14G1171600.v1.1
prunus_persica	Prupe.5G165700_v2.0.a1 Prupe.5G165700_v2.0.a1
pyrus_communis	pycom06g14830 pycom14g14330
rosa_chinensis	RchiOBHm_Chr7g0192581
rosa_laevigata	RLG00000004350
rosa_rugosa	Rorug07G0002300 Rorug07G0002400
rosa_samantha	Rh7AG126800 Rh7BG129000 Rh7CG130900 Rh7DG130200
rosa_wichuraiana	Rw7G010900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	425
Acc36I	ACCTGC	1 cut(s)	994
AccB1I	GGYRCC	1 cut(s)	365
AccB7I	CCANNNNNTGG	2 cut(s)	188, 733
AciI	CCGC	2 cut(s)	301, 445
AclWI	GGATC	2 cut(s)	152, 536
AcoI	YGGCCR	1 cut(s)	446
AcsI	RAATTY	2 cut(s)	71, 346
AfaI	GTAC	4 cut(s)	683, 688, 1045, 1065
AfiI	CCNNNNNNNGG	8 cut(s)	27, 28, 188, 667, 733, 794, 868, 897
AgsI	TTSAA	5 cut(s)	320, 547, 794, 877, 944
AjnI	CCWGG	2 cut(s)	810, 1039
AjuI	GAANNNNNNNTTGG	2 cut(s)	646, 678
AluBI	AGCT	9 cut(s)	6, 16, 68, 200, 403, 747, 830, 974, 1050
AluI	AGCT	9 cut(s)	6, 16, 68, 200, 403, 747, 830, 974, 1050
Alw21I	GWGCWC	1 cut(s)	202
Alw26I	GTCTC	2 cut(s)	286, 1073
AlwI	GGATC	2 cut(s)	152, 536
AoxI	GGCC	3 cut(s)	179, 446, 845
ApeKI	GCWGC	3 cut(s)	815, 824, 827
ApoI	RAATTY	2 cut(s)	71, 346
Asp700I	GAANNNNTTC	1 cut(s)	75
AspLEI	GCGC	1 cut(s)	426
AspS9I	GGNCC	2 cut(s)	179, 846
AsuHPI	GGTGA	3 cut(s)	134, 277, 1000
BanI	GGYRCC	1 cut(s)	365
BanII	GRGCYC	1 cut(s)	202
BarI	GAAGNNNNNNTAC	2 cut(s)	704, 736
BauI	CACGAG	3 cut(s)	465, 498, 892
Bbv12I	GWGCWC	1 cut(s)	202
BbvI	GCAGC	3 cut(s)	811, 827, 839
BccI	CCATC	4 cut(s)	88, 661, 1051, 1067
BciT130I	CCWGG	2 cut(s)	812, 1041
BcoDI	GTCTC	2 cut(s)	286, 1073
BfaI	CTAG	4 cut(s)	330, 488, 593, 953
BfmI	CTRYAG	3 cut(s)	570, 742, 825
BfuAI	ACCTGC	1 cut(s)	994
BisI	GCNGC	4 cut(s)	446, 816, 825, 828
BlsI	GCNGC	4 cut(s)	447, 817, 826, 829
BmcAI	AGTACT	1 cut(s)	688
Bme1390I	CCNGG	2 cut(s)	812, 1041
BmgT120I	GGNCC	2 cut(s)	179, 846
BmiI	GGNNCC	3 cut(s)	367, 378, 672
BmrFI	CCNGG	2 cut(s)	812, 1041
BmrI	ACTGGG	1 cut(s)	843
BmsI	GCATC	2 cut(s)	175, 727
BmuI	ACTGGG	1 cut(s)	843
BpmI	CTGGAG	4 cut(s)	258, 657, 794, 1014
Bpu10I	CCTNAGC	1 cut(s)	162
BsaAI	YACGTR	1 cut(s)	1067
BsaJI	CCNNGG	3 cut(s)	449, 998, 1039
BsaXI	ACNNNNNCTCC	2 cut(s)	958, 988
Bsc4I	CCNNNNNNNGG	8 cut(s)	27, 28, 188, 667, 733, 794, 868, 897
Bse1I	ACTGG	3 cut(s)	380, 655, 849
Bse3DI	GCAATG	2 cut(s)	419, 510
BseBI	CCWGG	2 cut(s)	812, 1041
BseDI	CCNNGG	3 cut(s)	449, 998, 1039
BseGI	GGATG	3 cut(s)	672, 742, 882
BseLI	CCNNNNNNNGG	8 cut(s)	27, 28, 188, 667, 733, 794, 868, 897
BseMI	GCAATG	2 cut(s)	419, 510
BseMII	CTCAG	2 cut(s)	390, 543
BseNI	ACTGG	3 cut(s)	380, 655, 849
BseRI	GAGGAG	3 cut(s)	884, 966, 987
BseXI	GCAGC	3 cut(s)	811, 827, 839
BshFI	GGCC	3 cut(s)	181, 448, 847
BshNI	GGYRCC	1 cut(s)	365
BsiHKAI	GWGCWC	1 cut(s)	202
BslFI	GGGAC	2 cut(s)	430, 1021
BslI	CCNNNNNNNGG	8 cut(s)	27, 28, 188, 667, 733, 794, 868, 897
BsmAI	GTCTC	2 cut(s)	286, 1073
BsmFI	GGGAC	2 cut(s)	430, 1021
BsmI	GAATGC	1 cut(s)	515
BsnI	GGCC	3 cut(s)	181, 448, 847
Bsp1286I	GDGCHC	1 cut(s)	202
Bsp1407I	TGTACA	1 cut(s)	681
Bsp143I	GATC	3 cut(s)	157, 282, 528
BspACI	CCGC	2 cut(s)	301, 445
BspANI	GGCC	3 cut(s)	181, 448, 847
BspCNI	CTCAG	2 cut(s)	391, 544
BspLI	GGNNCC	3 cut(s)	367, 378, 672
BspMAI	CTGCAG	2 cut(s)	574, 829
BspMI	ACCTGC	1 cut(s)	994
BspPI	GGATC	2 cut(s)	152, 536
BspT107I	GGYRCC	1 cut(s)	365
BsrDI	GCAATG	2 cut(s)	419, 510
BsrGI	TGTACA	1 cut(s)	681
BsrI	ACTGG	3 cut(s)	380, 655, 849
BssECI	CCNNGG	3 cut(s)	449, 998, 1039
BssMI	GATC	3 cut(s)	157, 282, 528
BssSI	CACGAG	3 cut(s)	465, 498, 892
BssT1I	CCWWGG	1 cut(s)	449
Bst2BI	CACGAG	3 cut(s)	465, 498, 892
Bst2UI	CCWGG	2 cut(s)	812, 1041
Bst4CI	ACNGT	8 cut(s)	241, 539, 586, 662, 686, 691, 1021, 1137
Bst6I	CTCTTC	2 cut(s)	273, 612
BstAPI	GCANNNNNTGC	3 cut(s)	470, 821, 824
BstAUI	TGTACA	1 cut(s)	681
BstBAI	YACGTR	1 cut(s)	1067
BstC8I	GCNNGC	2 cut(s)	370, 899
BstDEI	CTNAG	3 cut(s)	162, 399, 552
BstENI	CCTNNNNNAGG	2 cut(s)	792, 866
BstF5I	GGATG	3 cut(s)	672, 742, 882
BstHHI	GCGC	1 cut(s)	426
BstKTI	GATC	3 cut(s)	160, 285, 531
BstMAI	GTCTC	2 cut(s)	286, 1073
BstMBI	GATC	3 cut(s)	157, 282, 528
BstMWI	GCNNNNNNNGC	3 cut(s)	470, 821, 824
BstNI	CCWGG	2 cut(s)	812, 1041
BstNSI	RCATGY	2 cut(s)	445, 802
BstSCI	CCNGG	2 cut(s)	810, 1039
BstSFI	CTRYAG	3 cut(s)	570, 742, 825
BstV1I	GCAGC	3 cut(s)	811, 827, 839
BsuRI	GGCC	3 cut(s)	181, 448, 847
BtsCI	GGATG	3 cut(s)	672, 742, 882
BtsIMutI	CAGTG	3 cut(s)	856, 1017, 1142
BveI	ACCTGC	1 cut(s)	994
Cac8I	GCNNGC	2 cut(s)	370, 899
CfoI	GCGC	1 cut(s)	426
Cfr13I	GGNCC	2 cut(s)	179, 846
CseI	GACGC	2 cut(s)	470, 917
Csp6I	GTAC	4 cut(s)	682, 687, 1044, 1064
CviAII	CATG	5 cut(s)	203, 373, 442, 524, 799
CviQI	GTAC	4 cut(s)	682, 687, 1044, 1064
DdeI	CTNAG	3 cut(s)	162, 399, 552
DpnI	GATC	3 cut(s)	159, 284, 530
DpnII	GATC	3 cut(s)	157, 282, 528
DraI	TTTAAA	1 cut(s)	835
EaeI	YGGCCR	1 cut(s)	446
Eam1104I	CTCTTC	2 cut(s)	273, 612
EarI	CTCTTC	2 cut(s)	273, 612
Ecl136II	GAGCTC	1 cut(s)	200
Eco130I	CCWWGG	1 cut(s)	449
Eco24I	GRGCYC	1 cut(s)	202
Eco53kI	GAGCTC	1 cut(s)	200
EcoICRI	GAGCTC	1 cut(s)	200
EcoNI	CCTNNNNNAGG	2 cut(s)	792, 866
EcoRI	GAATTC	1 cut(s)	71
EcoRII	CCWGG	2 cut(s)	810, 1039
EcoT14I	CCWWGG	1 cut(s)	449
EcoT38I	GRGCYC	1 cut(s)	202
ErhI	CCWWGG	1 cut(s)	449
FaeI	CATG	5 cut(s)	206, 376, 445, 527, 802
FaqI	GGGAC	2 cut(s)	430, 1021
FatI	CATG	5 cut(s)	202, 372, 441, 523, 798
FauNDI	CATATG	1 cut(s)	820
Fnu4HI	GCNGC	4 cut(s)	446, 816, 825, 828
FokI	GGATG	3 cut(s)	679, 749, 869
FriOI	GRGCYC	1 cut(s)	202
Fsp4HI	GCNGC	4 cut(s)	446, 816, 825, 828
FspBI	CTAG	4 cut(s)	330, 488, 593, 953
FspI	TGCGCA	1 cut(s)	425
GlaI	GCGC	1 cut(s)	425
GluI	GCNGC	4 cut(s)	446, 816, 825, 828
GsuI	CTGGAG	4 cut(s)	258, 657, 794, 1014
HaeIII	GGCC	3 cut(s)	181, 448, 847
HgaI	GACGC	2 cut(s)	470, 917
HhaI	GCGC	1 cut(s)	426
Hin1II	CATG	5 cut(s)	206, 376, 445, 527, 802
Hin6I	GCGC	1 cut(s)	424
HinP1I	GCGC	1 cut(s)	424
HindIII	AAGCTT	1 cut(s)	14
HinfI	GANTC	6 cut(s)	98, 140, 620, 877, 991, 1034
HphI	GGTGA	3 cut(s)	134, 277, 1000
Hpy188I	TCNGA	3 cut(s)	134, 936, 1002
Hpy188III	TCNNGA	6 cut(s)	275, 330, 565, 674, 980, 1031
HpyAV	CCTTC	1 cut(s)	788
HpyCH4III	ACNGT	8 cut(s)	241, 539, 586, 662, 686, 691, 1021, 1137
HpyCH4IV	ACGT	1 cut(s)	1066
HpyCH4V	TGCA	6 cut(s)	245, 372, 503, 572, 752, 827
HpyF10VI	GCNNNNNNNGC	3 cut(s)	470, 821, 824
HpyF3I	CTNAG	3 cut(s)	162, 399, 552
HpySE526I	ACGT	1 cut(s)	1066
Hsp92II	CATG	5 cut(s)	206, 376, 445, 527, 802
HspAI	GCGC	1 cut(s)	424
Kzo9I	GATC	3 cut(s)	157, 282, 528
LmnI	GCTCC	4 cut(s)	197, 376, 676, 979
Lsp1109I	GCAGC	3 cut(s)	811, 827, 839
LweI	GCATC	2 cut(s)	175, 727
MaeI	CTAG	4 cut(s)	330, 488, 593, 953
MaeII	ACGT	1 cut(s)	1066
MaeIII	GTNAC	3 cut(s)	394, 539, 691
MalI	GATC	3 cut(s)	159, 284, 530
MboI	GATC	3 cut(s)	157, 282, 528
MboII	GAAGA	5 cut(s)	290, 629, 724, 1112, 1114
MfeI	CAATTG	1 cut(s)	753
MhlI	GDGCHC	1 cut(s)	202
MluCI	AATT	8 cut(s)	71, 186, 246, 346, 753, 782, 925, 939
MlyI	GAGTC	2 cut(s)	629, 1043
MmeI	TCCRAC	1 cut(s)	644
MroXI	GAANNNNTTC	1 cut(s)	75
MseI	TTAA	7 cut(s)	249, 438, 588, 626, 698, 773, 834
MslI	CAYNNNNRTG	1 cut(s)	522
MspR9I	CCNGG	2 cut(s)	812, 1041
MunI	CAATTG	1 cut(s)	753
Mva1269I	GAATGC	1 cut(s)	515
MvaI	CCWGG	2 cut(s)	812, 1041
MwoI	GCNNNNNNNGC	3 cut(s)	470, 821, 824
NdeI	CATATG	1 cut(s)	820
NdeII	GATC	3 cut(s)	157, 282, 528
NlaIII	CATG	5 cut(s)	206, 376, 445, 527, 802
NlaIV	GGNNCC	3 cut(s)	367, 378, 672
NmuCI	GTSAC	1 cut(s)	539
NsbI	TGCGCA	1 cut(s)	425
NspI	RCATGY	2 cut(s)	445, 802
PctI	GAATGC	1 cut(s)	515
PdmI	GAANNNNTTC	1 cut(s)	75
PfeI	GAWTC	4 cut(s)	98, 140, 877, 991
PflMI	CCANNNNNTGG	2 cut(s)	188, 733
PkrI	GCNGC	4 cut(s)	447, 817, 826, 829
PleI	GAGTC	2 cut(s)	628, 1042
PpsI	GAGTC	2 cut(s)	628, 1042
Ppu21I	YACGTR	1 cut(s)	1067
Psp124BI	GAGCTC	1 cut(s)	202
Psp6I	CCWGG	2 cut(s)	810, 1039
PspGI	CCWGG	2 cut(s)	810, 1039
PspN4I	GGNNCC	3 cut(s)	367, 378, 672
PspPI	GGNCC	2 cut(s)	179, 846
PstI	CTGCAG	2 cut(s)	574, 829
RsaI	GTAC	4 cut(s)	683, 688, 1045, 1065
RsaNI	GTAC	4 cut(s)	682, 687, 1044, 1064
RseI	CAYNNNNRTG	1 cut(s)	522
SacI	GAGCTC	1 cut(s)	202
SaqAI	TTAA	7 cut(s)	249, 438, 588, 626, 698, 773, 834
SatI	GCNGC	4 cut(s)	446, 816, 825, 828
Sau3AI	GATC	3 cut(s)	157, 282, 528
Sau96I	GGNCC	2 cut(s)	179, 846
ScaI	AGTACT	1 cut(s)	688
SchI	GAGTC	2 cut(s)	629, 1043
ScrFI	CCNGG	2 cut(s)	812, 1041
SduI	GDGCHC	1 cut(s)	202
SfaNI	GCATC	2 cut(s)	175, 727
SfcI	CTRYAG	3 cut(s)	570, 742, 825
SmiMI	CAYNNNNRTG	1 cut(s)	522
Sse9I	AATT	8 cut(s)	71, 186, 246, 346, 753, 782, 925, 939
SsiI	CCGC	2 cut(s)	301, 445
SspI	AATATT	1 cut(s)	39
SspMI	CTAG	4 cut(s)	330, 488, 593, 953
SstI	GAGCTC	1 cut(s)	202
StyD4I	CCNGG	2 cut(s)	810, 1039
StyI	CCWWGG	1 cut(s)	449
TaaI	ACNGT	8 cut(s)	241, 539, 586, 662, 686, 691, 1021, 1137
TaiI	ACGT	1 cut(s)	1069
TaqI	TCGA	1 cut(s)	919
TasI	AATT	8 cut(s)	71, 186, 246, 346, 753, 782, 925, 939
TatI	WGTACW	2 cut(s)	681, 686
TauI	GCSGC	1 cut(s)	448
TfiI	GAWTC	4 cut(s)	98, 140, 877, 991
Tru1I	TTAA	7 cut(s)	249, 438, 588, 626, 698, 773, 834
Tru9I	TTAA	7 cut(s)	249, 438, 588, 626, 698, 773, 834
TscAI	CASTG	3 cut(s)	856, 1024, 1142
TseFI	GTSAC	1 cut(s)	539
TseI	GCWGC	3 cut(s)	815, 824, 827
Tsp45I	GTSAC	1 cut(s)	539
TspDTI	ATGAA	1 cut(s)	64
TspGWI	ACGGA	1 cut(s)	1112
TspRI	CASTG	3 cut(s)	856, 1024, 1142
Van91I	CCANNNNNTGG	2 cut(s)	188, 733
XagI	CCTNNNNNAGG	2 cut(s)	792, 866
XapI	RAATTY	2 cut(s)	71, 346
XbaI	TCTAGA	1 cut(s)	329
XceI	RCATGY	2 cut(s)	445, 802
XmnI	GAANNNNTTC	1 cut(s)	75
XspI	CTAG	4 cut(s)	330, 488, 593, 953
ZrmI	AGTACT	1 cut(s)	688

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.