Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004577

Physical Location & Seq

Genomic Coordinates Reverse (-)

20757199 .. 20762461

Gene Structure 5263 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G51060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2718 bp

ATGTCTAGAGTGAGTTTTGAAGTGTCAGGAGGCTATCACTCTGATGCAGAAGCCGGAAACAGCGGACCAATGAGCGGTGGTCAATTACCACCGATCTATAAAAAACCGGGGAACTCCAGATTCACTGCTGAGAACAGTCAGAGAACACGTACGGCACCATACGTGGACCTCACGGTAGATGTACAAGACGATACAGTCTCTGTACATAGCTTGAAAATGGAAGGTGGATCTAGCGTTGAAGAGAGTCCGGAGCTTACTTTGCTGAAACGAAACCGTCTTGAGAAGAAAACAACGGTGGTGAAACGTTTGGCGTCTGTTTCTCACGAGCTTAAGCGTTTGACATCTGTTTCTGGTGGTATTGGTGGAAGAAAGCCGCCTCGACCGGCTAAGTTAGACCGGACTAAATCCGCCGCGAGTCAAGCGTTGAAGGGACTTAAGTTCATTAGTAAAACCGACGGTGGCGCCGGTTGGTCTGCCGTGGAGAAGCGGTTTAATCAGATTACCGCGACTACCGGTGGACTACTTCTTCGGACAAAGTTCGGTGAATGCATAGGAATGACTTCAAAGGATTTTGCTTTGGAACTGTTTGATGCATTGGCTAGAAGAAGGAATATAACAGGGGAAGTGATTGATGGAGATCAACTAAAGGAGTTTTGGGAACAAATTAATGATCAAAGTTTTGATTCTCGGCTTAAGACATTCTTTGACATGGTGGATAAAGATGCTGATGGTAGACTTACAGAAGACGAAGTTAGAGAGATTATCAGTCTTAGTGCTTCTGCGAATAATCTATCTACAATACAGAAGAGAGCTGATGAATATGCAGCATTGATCATGGAAGAGTTGGATCCAGACAATATAGGATACATCATGTTGGAGAGTCTTGAGACTCTGCTTTTGCAAGCGGCAACACAGTCTGTGATAACAAGTACTGGGGAGAGAAAGAATCTGAGTCATATGATGAGTCAGAGGCTTAAGCCTACGTTTAACCGCAACCCGTTGAAGCGATGGTACCGTGGTCTTAGATTCTTCTTGTTAGACAACTGGCAAAGATGTTGGGTTATAGTGCTATGGTTCATAGTTATGGCTATACTCTTCACCTACAAATATATCCAATACAGGCGTAGCCCTGTGTATCCAGTGATGGGTGATTGTGTGTGCATGGCTAAAGGTGCTGCAGAAACAGTGAAGCTGAACATGGCTTTGATTCTCTTACCTGTTTGTAGAAACACCATCACATGGCTTAGAAATAAGACCAGGTTGGGTCGTGTTGTCCCATTTGATGACAATCTCAACTTCCACAAGGTTATAGCGGTGGGGATTATAGTTGGAGTAACGATGCACGCCGGGGCACATTTAGCGTGTGATTTCCCGCGGTTACTACATGCAACTCCAGAGGCATATAGGCCTTTAAGACAGTTTTTTGGGGATGAGCAACCAAAGAGCTACTGGCATTTTGTAAACTCGGTAGAAGGTATAACCGGACTTGTGATGGTTTTGTTAATGGCGATTGCATTCACACTAGCCACGCCTTGGTTCAGAAGAGGGAAGCTAAACTATCTTCCAGGACCATTAAAGAAACTAGCTAGCTTCAATGCCTTCTGGTACACTCATCATTTGTTTGTCATAGTCTACATTCTTCTTGTTGCTCATGGATACTACTTGTATCTCACCAGAGACTGGCACAATAAAACGACTTGGATGTATTTGGTGGTACCAGTGGTTCTATACGCGTGTGAAAGGTTGATAAGAGCATTCAGGTCGAGCATCAAGGCGGTGACTATTAGGAAAGTAGCAGTTTATCCAGGAAACGTGCTGGCAATTCACTTGTCAAGGCCTCAAAACTTCAAATACAAGAGTGGTCAATACATGTTTGTTAACTGTGCTGCTGTTTCTCCATTTGAATGGCATCCATTTTCAATCACATCTGCACCACAAGATGATTACCTAAGTGTTCACATTAGAGTTCTTGGGGATTGGACACGAGCTCTCAAAGGAGTCTTCTCTGAGGTGTGTAAGCCACCACCGGCAGGAGTTAGTGGTCTGCTTAGAGCCGACATGTTGCATGGTGCAAATAATCCCGACTTCCCGAAAGTCTTGATTGATGGTCCATATGGTGCACCAGCACAAGACTACAAGAAGTACGAGGTGGTTCTACTAGTTGGTCTCGGGATTGGAGCCACACCAATGATCAGTATCGTCAAAGACATTGTTAATAACATCAAGGCCAAGGAACAAGCCCAACTAAACCGAATGGAGAATGGAACAAGCGAACCACAACGAAGTAAGAAAGAGAGTTTCAGGACCCGTAGAGCTTACTTCTATTGGGTTACGCGTGAGCAAGGCTCTTTCGATTGGTTCAAGAACATAATGAACGAAGTCGCGGAACGAGATGCCAACCGCGTCATCGAAATGCATAACTATTGTACAAGTGTCTATGAAGAAGGTGACGCTCGTTCCGCACTTATACATATGCTTCAATCACTAAACCATGCAAAGAACGGCGTCGACATTGTCTCTGGAACAAGAGTTATGTCCCATTTCGCTAAACCTAATTGGAGAAATGTTTACAAGCGTATAGCTATGGATCATCCTAACACCAAAGTTGGAGTGTTTTACTGTGGAGCACCAGCATTGACAAAGGAGCTAAGGCATCTAGCTTTAGATTTCACCCACAAAACAAGCACCAGATTCTCCTTCCACAAAGAGAATTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0005840 GO:0005886 GO:0005887 GO:0006091 GO:0007275 GO:0007584 GO:0008150 GO:0008152 GO:0009060 GO:0009605 GO:0009653 GO:0009888 GO:0009987 GO:0009991 GO:0010015 GO:0010033 GO:0010053 GO:0010243 GO:0014070 GO:0014074 GO:0015980 GO:0016020 GO:0016021 GO:0016174 GO:0016491 GO:0016651 GO:0022622 GO:0022626 GO:0030154 GO:0031224 GO:0031226 GO:0031667 GO:0032501 GO:0032502 GO:0032991 GO:0033198 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044424 GO:0044425 GO:0044444 GO:0044445 GO:0044459 GO:0044464 GO:0045333 GO:0046683 GO:0048364 GO:0048731 GO:0048856 GO:0048869 GO:0050664 GO:0050896 GO:0055114 GO:0071944 GO:0090558 GO:0090627 GO:0099402 GO:1901698 GO:1901700 GO:1905392 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko04016 ko04626 map04016 map04626

Pfam Domains

Protein Families

FAD_binding_8 Ferric_reduct NADPH_Ox NAD_binding_6

Protein Analysis

905

Amino Acids

102.52

Weight (kDa)

9.5

Isoelectric Point (pI)

42.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NADPH_Ox	PF08414	130 - 229	4.4e-38	Respiratory burst NADPH oxidase
Ferric_reduct	PF01794	399 - 549	6.3e-13	Ferric reductase like transmembrane component
FAD_binding_8	PF08022	591 - 709	1.3e-36	FAD-binding domain
NAD_binding_6	PF08030	715 - 887	4.7e-52	Ferric reductase NAD binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004577)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25090 AT4G25090 AT5G07390 AT5G07390 AT5G51060
fragaria_vesca	FvH4_5g10010 FvH4_5g10010 FvH4_5g10010 FvH4_5g10010
malus_domestica	MD06G1128500.v1.1
prunus_persica	Prupe.5G138300_v2.0.a1
pyrus_communis	pycom06g11870
rosa_chinensis	RchiOBHm_Chr7g0188251 RchiOBHm_Chr7g0202531
rosa_laevigata	RLG00000003591 RLG00000004714
rosa_multiflora	Rmu_sc0008750.1_g000012 Rmu_sc0029377.1_g000002
rosa_roxburghii	Rroxscaffold_3G00254540 Rroxscaffold_3G00266570
rosa_rugosa	Rorug06G0489400
rosa_samantha	Rh7AG093800 Rh7AG198600 Rh7BG095200 Rh7BG199900 Rh7CG095600 Rh7CG210100 Rh7DG095800 Rh7DG205500
rosa_wichuraiana	Rw7G008080 Rw7G017430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	194
Acc65I	GGTACC	2 cut(s)	1011, 1714
AccB1I	GGYRCC	4 cut(s)	154, 461, 1011, 1714
AccB7I	CCANNNNNTGG	3 cut(s)	1239, 1533, 1680
AccBSI	CCGCTC	1 cut(s)	75
AccI	GTMKAC	3 cut(s)	733, 1632, 2508
AccII	CGCG	7 cut(s)	413, 506, 1375, 1733, 2335, 2384, 2403
AccIII	TCCGGA	1 cut(s)	247
AclI	AACGTT	1 cut(s)	304
AclWI	GGATC	4 cut(s)	235, 842, 855, 2595
AcsI	RAATTY	1 cut(s)	2710
AcyI	GRCGYC	3 cut(s)	311, 462, 2505
AfaI	GTAC	9 cut(s)	151, 183, 204, 931, 1013, 1607, 1716, 2144, 2428
AfiI	CCNNNNNNNGG	6 cut(s)	74, 1145, 1239, 1533, 1680, 2030
AflII	CTTAAG	4 cut(s)	329, 434, 692, 974
AflIII	ACRYGT	5 cut(s)	146, 1731, 1869, 2058, 2333
AgeI	ACCGGT	1 cut(s)	512
AhlI	ACTAGT	1 cut(s)	2158
AjnI	CCWGG	3 cut(s)	1256, 1564, 1804
Alw21I	GWGCWC	3 cut(s)	1990, 2122, 2629
Alw26I	GTCTC	5 cut(s)	202, 881, 1671, 2171, 2521
Alw44I	GTGCAC	1 cut(s)	2118
AlwI	GGATC	4 cut(s)	235, 842, 855, 2595
AlwNI	CAGNNNCTG	2 cut(s)	200, 1680
Ama87I	CYCGRG	1 cut(s)	2168
Aor13HI	TCCGGA	1 cut(s)	247
AoxI	GGCC	3 cut(s)	1406, 1835, 2226
ApaLI	GTGCAC	1 cut(s)	2118
ApeKI	GCWGC	3 cut(s)	824, 1175, 1886
ApoI	RAATTY	1 cut(s)	2710
ArsI	GACNNNNNNTTYG	4 cut(s)	510, 542, 880, 912
AseI	ATTAAT	1 cut(s)	666
AsiGI	ACCGGT	1 cut(s)	512
Asp700I	GAANNNNTTC	1 cut(s)	559
Asp718I	GGTACC	2 cut(s)	1011, 1714
AspLEI	GCGC	1 cut(s)	464
AspS9I	GGNCC	5 cut(s)	65, 166, 1568, 2108, 2304
AsuC2I	CCSGG	2 cut(s)	108, 1348
AsuHPI	GGTGA	8 cut(s)	310, 554, 1090, 1160, 1663, 1789, 2459, 2662
AsuNHI	GCTAGC	1 cut(s)	1586
AvaI	CYCGRG	1 cut(s)	2168
AvaII	GGWCC	5 cut(s)	65, 166, 1568, 2108, 2304
BaeGI	GKGCMC	2 cut(s)	1354, 2122
BaeI	ACNNNNGTAYC	2 cut(s)	1003, 1036
BamHI	GGATCC	1 cut(s)	847
BanI	GGYRCC	4 cut(s)	154, 461, 1011, 1714
BanII	GRGCYC	1 cut(s)	1990
BarI	GAAGNNNNNNTAC	2 cut(s)	995, 1027
BauI	CACGAG	2 cut(s)	323, 1983
BbsI	GAAGAC	2 cut(s)	750, 1993
Bbv12I	GWGCWC	3 cut(s)	1990, 2122, 2629
BbvI	GCAGC	3 cut(s)	836, 1162, 1873
BccI	CCATC	7 cut(s)	626, 722, 1002, 1138, 1241, 1486, 2099
BceAI	ACGGC	3 cut(s)	168, 461, 2518
BcgI	CGANNNNNNTGC	2 cut(s)	1743, 1777
BciT130I	CCWGG	3 cut(s)	1258, 1566, 1806
BciVI	GTATCC	3 cut(s)	857, 1146, 1649
BclI	TGATCA	3 cut(s)	670, 831, 2190
BcnI	CCSGG	2 cut(s)	108, 1348
BcoDI	GTCTC	5 cut(s)	202, 881, 1671, 2171, 2521
BcuI	ACTAGT	1 cut(s)	2158
BfaI	CTAG	8 cut(s)	6, 231, 600, 1523, 1583, 1587, 2159, 2657
BfmI	CTRYAG	1 cut(s)	1176
BfoI	RGCGCY	1 cut(s)	465
BfrI	CTTAAG	4 cut(s)	329, 434, 692, 974
BfuI	GTATCC	3 cut(s)	857, 1146, 1649
BisI	GCNGC	6 cut(s)	374, 411, 825, 906, 1176, 1887
BlsI	GCNGC	6 cut(s)	375, 412, 826, 907, 1177, 1888
BmcAI	AGTACT	1 cut(s)	931
Bme1390I	CCNGG	5 cut(s)	108, 1258, 1348, 1566, 1806
Bme18I	GGWCC	5 cut(s)	65, 166, 1568, 2108, 2304
BmeT110I	CYCGRG	1 cut(s)	2168
BmgT120I	GGNCC	5 cut(s)	65, 166, 1568, 2108, 2304
BmiI	GGNNCC	7 cut(s)	156, 463, 849, 1013, 1716, 2179, 2306
BmrFI	CCNGG	5 cut(s)	108, 1258, 1348, 1566, 1806
BmrI	ACTGGG	1 cut(s)	942
BmsI	GCATC	8 cut(s)	34, 580, 712, 1329, 1776, 1918, 2383, 2662
BmtI	GCTAGC	1 cut(s)	1590
BmuI	ACTGGG	1 cut(s)	942
BpiI	GAAGAC	2 cut(s)	750, 1993
BplI	GAGNNNNNCTC	2 cut(s)	2330, 2362
BpmI	CTGGAG	2 cut(s)	100, 1377
Bpu10I	CCTNAGC	1 cut(s)	2648
BpuEI	CTTGAG	2 cut(s)	299, 905
BpuMI	CCSGG	2 cut(s)	108, 1348
BsaAI	YACGTR	2 cut(s)	149, 163
BsaBI	GATNNNNATC	3 cut(s)	636, 1287, 2195
BsaHI	GRCGYC	3 cut(s)	311, 462, 2505
BsaI	GGTCTC	1 cut(s)	2171
BsaJI	CCNNGG	7 cut(s)	107, 477, 1015, 1347, 1373, 1532, 2229
BsaWI	WCCGGW	4 cut(s)	247, 396, 512, 1481
BsaXI	ACNNNNNCTCC	2 cut(s)	473, 503
Bsc4I	CCNNNNNNNGG	6 cut(s)	74, 1145, 1239, 1533, 1680, 2030
Bse118I	RCCGGY	4 cut(s)	382, 464, 512, 2026
Bse1I	ACTGG	6 cut(s)	937, 1049, 1139, 1454, 1685, 1718
Bse8I	GATNNNNATC	3 cut(s)	636, 1287, 2195
BseAI	TCCGGA	1 cut(s)	247
BseBI	CCWGG	3 cut(s)	1258, 1566, 1806
BseDI	CCNNGG	7 cut(s)	107, 477, 1015, 1347, 1373, 1532, 2229
BseGI	GGATG	4 cut(s)	1435, 1707, 1909, 2590
BseJI	GATNNNNATC	3 cut(s)	636, 1287, 2195
BseLI	CCNNNNNNNGG	6 cut(s)	74, 1145, 1239, 1533, 1680, 2030
BseMII	CTCAG	3 cut(s)	120, 941, 1998
BseNI	ACTGG	6 cut(s)	937, 1049, 1139, 1454, 1685, 1718
BseSI	GKGCMC	2 cut(s)	1354, 2122
BseXI	GCAGC	3 cut(s)	836, 1162, 1873
BsgI	GTGCAG	1 cut(s)	1914
Bsh1236I	CGCG	7 cut(s)	413, 506, 1375, 1733, 2335, 2384, 2403
Bsh1285I	CGRYCG	1 cut(s)	383
BshFI	GGCC	3 cut(s)	1408, 1837, 2228
BshNI	GGYRCC	4 cut(s)	154, 461, 1011, 1714
BshTI	ACCGGT	1 cut(s)	512
BsiEI	CGRYCG	1 cut(s)	383
BsiHKAI	GWGCWC	3 cut(s)	1990, 2122, 2629
BsiHKCI	CYCGRG	1 cut(s)	2168
BsiWI	CGTACG	1 cut(s)	149
BslFI	GGGAC	3 cut(s)	444, 1259, 2521
BslI	CCNNNNNNNGG	6 cut(s)	74, 1145, 1239, 1533, 1680, 2030
BsmAI	GTCTC	5 cut(s)	202, 881, 1671, 2171, 2521
BsmFI	GGGAC	3 cut(s)	444, 1259, 2521
BsmI	GAATGC	3 cut(s)	551, 1514, 1754
BsnI	GGCC	3 cut(s)	1408, 1837, 2228
Bso31I	GGTCTC	1 cut(s)	2171
BsoBI	CYCGRG	1 cut(s)	2168
Bsp1286I	GDGCHC	4 cut(s)	1354, 1990, 2122, 2629
Bsp13I	TCCGGA	1 cut(s)	247
Bsp1407I	TGTACA	3 cut(s)	181, 202, 2426
Bsp143I	GATC	8 cut(s)	93, 227, 637, 670, 831, 847, 2190, 2587
BspANI	GGCC	3 cut(s)	1408, 1837, 2228
BspCNI	CTCAG	3 cut(s)	121, 942, 1999
BspEI	TCCGGA	1 cut(s)	247
BspFNI	CGCG	7 cut(s)	413, 506, 1375, 1733, 2335, 2384, 2403
BspLI	GGNNCC	7 cut(s)	156, 463, 849, 1013, 1716, 2179, 2306
BspMAI	CTGCAG	1 cut(s)	1180
BspOI	GCTAGC	1 cut(s)	1590
BspPI	GGATC	4 cut(s)	235, 842, 855, 2595
BspT107I	GGYRCC	4 cut(s)	154, 461, 1011, 1714
BspTI	CTTAAG	4 cut(s)	329, 434, 692, 974
BspTNI	GGTCTC	1 cut(s)	2171
BsrBI	CCGCTC	1 cut(s)	75
BsrFI	RCCGGY	4 cut(s)	382, 464, 512, 2026
BsrGI	TGTACA	3 cut(s)	181, 202, 2426
BsrI	ACTGG	6 cut(s)	937, 1049, 1139, 1454, 1685, 1718
BssAI	RCCGGY	4 cut(s)	382, 464, 512, 2026
BssECI	CCNNGG	7 cut(s)	107, 477, 1015, 1347, 1373, 1532, 2229
BssMI	GATC	8 cut(s)	93, 227, 637, 670, 831, 847, 2190, 2587
BssNI	GRCGYC	3 cut(s)	311, 462, 2505
BssSI	CACGAG	2 cut(s)	323, 1983
BssT1I	CCWWGG	2 cut(s)	1532, 2229
Bst2BI	CACGAG	2 cut(s)	323, 1983
Bst2UI	CCWGG	3 cut(s)	1258, 1566, 1806
Bst6I	CTCTTC	5 cut(s)	234, 800, 834, 1100, 1537
BstACI	GRCGYC	3 cut(s)	311, 462, 2505
BstAFI	CTTAAG	4 cut(s)	329, 434, 692, 974
BstAUI	TGTACA	3 cut(s)	181, 202, 2426
BstBAI	YACGTR	2 cut(s)	149, 163
BstC8I	GCNNGC	4 cut(s)	903, 1344, 1588, 1818
BstDSI	CCRYGG	3 cut(s)	477, 1015, 1373
BstF5I	GGATG	4 cut(s)	1435, 1707, 1909, 2590
BstFNI	CGCG	7 cut(s)	413, 506, 1375, 1733, 2335, 2384, 2403
BstH2I	RGCGCY	1 cut(s)	465
BstHHI	GCGC	1 cut(s)	464
BstKTI	GATC	8 cut(s)	96, 230, 640, 673, 834, 850, 2193, 2590
BstMAI	GTCTC	5 cut(s)	202, 881, 1671, 2171, 2521
BstMBI	GATC	8 cut(s)	93, 227, 637, 670, 831, 847, 2190, 2587
BstMCI	CGRYCG	1 cut(s)	383
BstMWI	GCNNNNNNNGC	5 cut(s)	259, 419, 1172, 1358, 2459
BstNI	CCWGG	3 cut(s)	1258, 1566, 1806
BstNSI	RCATGY	3 cut(s)	1388, 1873, 2062
BstSCI	CCNGG	5 cut(s)	106, 1256, 1346, 1564, 1804
BstSFI	CTRYAG	1 cut(s)	1176
BstSLI	GKGCMC	2 cut(s)	1354, 2122
BstUI	CGCG	7 cut(s)	413, 506, 1375, 1733, 2335, 2384, 2403
BstV1I	GCAGC	3 cut(s)	836, 1162, 1873
BstV2I	GAAGAC	2 cut(s)	750, 1993
BstX2I	RGATCY	2 cut(s)	227, 847
BstXI	CCANNNNNNTGG	1 cut(s)	1905
BstYI	RGATCY	2 cut(s)	227, 847
BsuI	GTATCC	3 cut(s)	857, 1146, 1649
BsuRI	GGCC	3 cut(s)	1408, 1837, 2228
BtgI	CCRYGG	3 cut(s)	477, 1015, 1373
BtgZI	GCGATG	1 cut(s)	1021
BtsCI	GGATG	4 cut(s)	1435, 1707, 1909, 2590
BtsI	GCAGTG	1 cut(s)	123
BtsIMutI	CAGTG	4 cut(s)	123, 1146, 1191, 1725
Cac8I	GCNNGC	4 cut(s)	903, 1344, 1588, 1818
CaiI	CAGNNNCTG	2 cut(s)	200, 1680
CfoI	GCGC	1 cut(s)	464
Cfr10I	RCCGGY	4 cut(s)	382, 464, 512, 2026
Cfr13I	GGNCC	5 cut(s)	65, 166, 1568, 2108, 2304
Cfr42I	CCGCGG	1 cut(s)	1376
CseI	GACGC	4 cut(s)	300, 2392, 2459, 2494
CsiI	ACCWGGT	1 cut(s)	1256
Csp6I	GTAC	9 cut(s)	150, 182, 203, 930, 1012, 1606, 1715, 2143, 2427
CspAI	ACCGGT	1 cut(s)	512
CviQI	GTAC	9 cut(s)	150, 182, 203, 930, 1012, 1606, 1715, 2143, 2427
DinI	GGCGCC	1 cut(s)	463
DpnI	GATC	8 cut(s)	95, 229, 639, 672, 833, 849, 2192, 2589
DpnII	GATC	8 cut(s)	93, 227, 637, 670, 831, 847, 2190, 2587
DrdI	GACNNNNNNGTC	1 cut(s)	194
DseDI	GACNNNNNNGTC	1 cut(s)	194
Eam1104I	CTCTTC	5 cut(s)	234, 800, 834, 1100, 1537
EarI	CTCTTC	5 cut(s)	234, 800, 834, 1100, 1537
EciI	GGCGGA	1 cut(s)	397
Ecl136II	GAGCTC	1 cut(s)	1988
Eco130I	CCWWGG	2 cut(s)	1532, 2229
Eco147I	AGGCCT	2 cut(s)	1408, 1837
Eco24I	GRGCYC	1 cut(s)	1990
Eco31I	GGTCTC	1 cut(s)	2171
Eco47I	GGWCC	5 cut(s)	65, 166, 1568, 2108, 2304
Eco53kI	GAGCTC	1 cut(s)	1988
Eco88I	CYCGRG	1 cut(s)	2168
EcoICRI	GAGCTC	1 cut(s)	1988
EcoO109I	RGGNCCY	1 cut(s)	2304
EcoRII	CCWGG	3 cut(s)	1256, 1564, 1804
EcoT14I	CCWWGG	2 cut(s)	1532, 2229
EcoT22I	ATGCAT	3 cut(s)	551, 595, 2418
EcoT38I	GRGCYC	1 cut(s)	1990
EgeI	GGCGCC	1 cut(s)	463
EheI	GGCGCC	1 cut(s)	463
ErhI	CCWWGG	2 cut(s)	1532, 2229
FalI	AAGNNNNNCTT	2 cut(s)	686, 718
FaqI	GGGAC	3 cut(s)	444, 1259, 2521
FauI	CCCGC	1 cut(s)	1380
FauNDI	CATATG	3 cut(s)	957, 2113, 2472
FbaI	TGATCA	3 cut(s)	670, 831, 2190
FblI	GTMKAC	3 cut(s)	733, 1632, 2508
Fnu4HI	GCNGC	6 cut(s)	374, 411, 825, 906, 1176, 1887
FokI	GGATG	4 cut(s)	1442, 1714, 1896, 2577
FriOI	GRGCYC	1 cut(s)	1990
Fsp4HI	GCNGC	6 cut(s)	374, 411, 825, 906, 1176, 1887
FspBI	CTAG	8 cut(s)	6, 231, 600, 1523, 1583, 1587, 2159, 2657
GlaI	GCGC	1 cut(s)	463
GluI	GCNGC	6 cut(s)	374, 411, 825, 906, 1176, 1887
GsuI	CTGGAG	2 cut(s)	100, 1377
HaeII	RGCGCY	1 cut(s)	465
HaeIII	GGCC	3 cut(s)	1408, 1837, 2228
HgaI	GACGC	4 cut(s)	300, 2392, 2459, 2494
HhaI	GCGC	1 cut(s)	464
Hin1I	GRCGYC	3 cut(s)	311, 462, 2505
Hin6I	GCGC	1 cut(s)	462
HinP1I	GCGC	1 cut(s)	462
HincII	GTYRAC	2 cut(s)	1879, 2509
HindII	GTYRAC	2 cut(s)	1879, 2509
HpaI	GTTAAC	1 cut(s)	1879
HphI	GGTGA	8 cut(s)	310, 554, 1090, 1160, 1663, 1789, 2459, 2662
Hpy188I	TCNGA	8 cut(s)	43, 141, 498, 531, 951, 969, 1541, 2008
Hpy99I	CGWCG	2 cut(s)	458, 2510
HpyAV	CCTTC	7 cut(s)	215, 421, 600, 1466, 1609, 2438, 2707
HpyCH4IV	ACGT	5 cut(s)	148, 162, 304, 983, 1812
HpyF10VI	GCNNNNNNNGC	5 cut(s)	259, 419, 1172, 1358, 2459
HpySE526I	ACGT	5 cut(s)	148, 162, 304, 983, 1812
Hsp92I	GRCGYC	3 cut(s)	311, 462, 2505
HspAI	GCGC	1 cut(s)	462
KasI	GGCGCC	1 cut(s)	461
Kpn2I	TCCGGA	1 cut(s)	247
KpnI	GGTACC	2 cut(s)	1015, 1718
Ksp22I	TGATCA	3 cut(s)	670, 831, 2190
KspAI	GTTAAC	1 cut(s)	1879
KspI	CCGCGG	1 cut(s)	1376
Kzo9I	GATC	8 cut(s)	93, 227, 637, 670, 831, 847, 2190, 2587
LmnI	GCTCC	4 cut(s)	250, 2177, 2624, 2644
Lsp1109I	GCAGC	3 cut(s)	836, 1162, 1873
LweI	GCATC	8 cut(s)	34, 580, 712, 1329, 1776, 1918, 2383, 2662
MabI	ACCWGGT	1 cut(s)	1256
MaeI	CTAG	8 cut(s)	6, 231, 600, 1523, 1583, 1587, 2159, 2657
MaeII	ACGT	5 cut(s)	148, 162, 304, 983, 1812
MaeIII	GTNAC	5 cut(s)	1333, 1377, 1777, 2329, 2447
MalI	GATC	8 cut(s)	95, 229, 639, 672, 833, 849, 2192, 2589
MbiI	CCGCTC	1 cut(s)	75
MboI	GATC	8 cut(s)	93, 227, 637, 670, 831, 847, 2190, 2587
MflI	RGATCY	2 cut(s)	227, 847
MhlI	GDGCHC	4 cut(s)	1354, 1990, 2122, 2629
MluCI	AATT	5 cut(s)	83, 663, 1821, 2554, 2710
MluI	ACGCGT	2 cut(s)	1731, 2333
Mly113I	GGCGCC	1 cut(s)	462
MlyI	GAGTC	7 cut(s)	253, 424, 883, 889, 961, 973, 2007
MmeI	TCCRAC	4 cut(s)	825, 855, 1309, 2587
MnlI	CCTC	9 cut(s)	23, 179, 387, 963, 1390, 1538, 1848, 2002, 2140
Mph1103I	ATGCAT	3 cut(s)	551, 595, 2418
MroI	TCCGGA	1 cut(s)	247
MroXI	GAANNNNTTC	1 cut(s)	559
MslI	CAYNNNNRTG	6 cut(s)	42, 554, 1082, 1903, 2186, 2411
MspA1I	CMGCKG	2 cut(s)	63, 1375
MspCI	CTTAAG	4 cut(s)	329, 434, 692, 974
MspR9I	CCNGG	5 cut(s)	108, 1258, 1348, 1566, 1806
Mva1269I	GAATGC	3 cut(s)	551, 1514, 1754
MvaI	CCWGG	3 cut(s)	1258, 1566, 1806
MvnI	CGCG	7 cut(s)	413, 506, 1375, 1733, 2335, 2384, 2403
MwoI	GCNNNNNNNGC	5 cut(s)	259, 419, 1172, 1358, 2459
NarI	GGCGCC	1 cut(s)	462
NciI	CCSGG	2 cut(s)	108, 1348
NdeI	CATATG	3 cut(s)	957, 2113, 2472
NdeII	GATC	8 cut(s)	93, 227, 637, 670, 831, 847, 2190, 2587
NheI	GCTAGC	1 cut(s)	1586
NlaIV	GGNNCC	7 cut(s)	156, 463, 849, 1013, 1716, 2179, 2306
NmeAIII	GCCGAG	1 cut(s)	667
NmuCI	GTSAC	2 cut(s)	1777, 2447
NsiI	ATGCAT	3 cut(s)	551, 595, 2418
NspI	RCATGY	3 cut(s)	1388, 1873, 2062
PceI	AGGCCT	2 cut(s)	1408, 1837
PciI	ACATGT	2 cut(s)	1869, 2058
PctI	GAATGC	3 cut(s)	551, 1514, 1754
PdmI	GAANNNNTTC	1 cut(s)	559
PfeI	GAWTC	6 cut(s)	120, 683, 946, 1026, 1207, 2691
Pfl23II	CGTACG	1 cut(s)	149
PflFI	GACNNNGTC	1 cut(s)	2513
PflMI	CCANNNNNTGG	3 cut(s)	1239, 1533, 1680
PfoI	TCCNGGA	2 cut(s)	1564, 1804
PinAI	ACCGGT	1 cut(s)	512
PkrI	GCNGC	6 cut(s)	375, 412, 826, 907, 1177, 1888
PleI	GAGTC	7 cut(s)	252, 423, 883, 888, 960, 972, 2006
PluTI	GGCGCC	1 cut(s)	465
PpsI	GAGTC	7 cut(s)	252, 423, 883, 888, 960, 972, 2006
Ppu21I	YACGTR	2 cut(s)	149, 163
PpuMI	RGGWCCY	1 cut(s)	2304
PscI	ACATGT	2 cut(s)	1869, 2058
PshBI	ATTAAT	1 cut(s)	666
Psp124BI	GAGCTC	1 cut(s)	1990
Psp1406I	AACGTT	1 cut(s)	304
Psp5II	RGGWCCY	1 cut(s)	2304
Psp6I	CCWGG	3 cut(s)	1256, 1564, 1804
PspGI	CCWGG	3 cut(s)	1256, 1564, 1804
PspLI	CGTACG	1 cut(s)	149
PspN4I	GGNNCC	7 cut(s)	156, 463, 849, 1013, 1716, 2179, 2306
PspPI	GGNCC	5 cut(s)	65, 166, 1568, 2108, 2304
PspPPI	RGGWCCY	1 cut(s)	2304
PsrI	GAACNNNNNNTAC	2 cut(s)	1707, 1739
PstI	CTGCAG	1 cut(s)	1180
PstNI	CAGNNNCTG	2 cut(s)	200, 1680
PsuI	RGATCY	2 cut(s)	227, 847
PsyI	GACNNNGTC	1 cut(s)	2513
RsaI	GTAC	9 cut(s)	151, 183, 204, 931, 1013, 1607, 1716, 2144, 2428
RsaNI	GTAC	9 cut(s)	150, 182, 203, 930, 1012, 1606, 1715, 2143, 2427
RseI	CAYNNNNRTG	6 cut(s)	42, 554, 1082, 1903, 2186, 2411
SacI	GAGCTC	1 cut(s)	1990
SacII	CCGCGG	1 cut(s)	1376
SalI	GTCGAC	1 cut(s)	2507
SatI	GCNGC	6 cut(s)	374, 411, 825, 906, 1176, 1887
Sau3AI	GATC	8 cut(s)	93, 227, 637, 670, 831, 847, 2190, 2587
Sau96I	GGNCC	5 cut(s)	65, 166, 1568, 2108, 2304
ScaI	AGTACT	1 cut(s)	931
SchI	GAGTC	7 cut(s)	253, 424, 883, 889, 961, 973, 2007
ScrFI	CCNGG	5 cut(s)	108, 1258, 1348, 1566, 1806
SduI	GDGCHC	4 cut(s)	1354, 1990, 2122, 2629
SexAI	ACCWGGT	1 cut(s)	1256
SfaNI	GCATC	8 cut(s)	34, 580, 712, 1329, 1776, 1918, 2383, 2662
SfcI	CTRYAG	1 cut(s)	1176
SfoI	GGCGCC	1 cut(s)	463
Sfr303I	CCGCGG	1 cut(s)	1376
SgrBI	CCGCGG	1 cut(s)	1376
SinI	GGWCC	5 cut(s)	65, 166, 1568, 2108, 2304
SmiMI	CAYNNNNRTG	6 cut(s)	42, 554, 1082, 1903, 2186, 2411
SmlI	CTYRAG	6 cut(s)	278, 329, 434, 692, 884, 974
SmoI	CTYRAG	6 cut(s)	278, 329, 434, 692, 884, 974
SpeI	ACTAGT	1 cut(s)	2158
Sse9I	AATT	5 cut(s)	83, 663, 1821, 2554, 2710
SseBI	AGGCCT	2 cut(s)	1408, 1837
SspDI	GGCGCC	1 cut(s)	461
SspMI	CTAG	8 cut(s)	6, 231, 600, 1523, 1583, 1587, 2159, 2657
SstI	GAGCTC	1 cut(s)	1990
StuI	AGGCCT	2 cut(s)	1408, 1837
StyD4I	CCNGG	5 cut(s)	106, 1256, 1346, 1564, 1804
StyI	CCWWGG	2 cut(s)	1532, 2229
TaiI	ACGT	5 cut(s)	151, 165, 307, 986, 1815
TaqI	TCGA	5 cut(s)	379, 1763, 2352, 2409, 2508
TasI	AATT	5 cut(s)	83, 663, 1821, 2554, 2710
TatI	WGTACW	4 cut(s)	181, 202, 929, 2426
TauI	GCSGC	3 cut(s)	376, 413, 908
TfiI	GAWTC	6 cut(s)	120, 683, 946, 1026, 1207, 2691
TscAI	CASTG	4 cut(s)	130, 1146, 1191, 1725
TseFI	GTSAC	2 cut(s)	1777, 2447
TseI	GCWGC	3 cut(s)	824, 1175, 1886
Tsp45I	GTSAC	2 cut(s)	1777, 2447
TspDTI	ATGAA	5 cut(s)	430, 831, 1066, 2387, 2454
TspRI	CASTG	4 cut(s)	130, 1146, 1191, 1725
Tth111I	GACNNNGTC	1 cut(s)	2513
Van91I	CCANNNNNTGG	3 cut(s)	1239, 1533, 1680
Vha464I	CTTAAG	4 cut(s)	329, 434, 692, 974
VneI	GTGCAC	1 cut(s)	2118
VpaK11BI	GGWCC	5 cut(s)	65, 166, 1568, 2108, 2304
VspI	ATTAAT	1 cut(s)	666
XapI	RAATTY	1 cut(s)	2710
XbaI	TCTAGA	1 cut(s)	5
XceI	RCATGY	3 cut(s)	1388, 1873, 2062
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1446
XmiI	GTMKAC	3 cut(s)	733, 1632, 2508
XmnI	GAANNNNTTC	1 cut(s)	559
XspI	CTAG	8 cut(s)	6, 231, 600, 1523, 1583, 1587, 2159, 2657
ZrmI	AGTACT	1 cut(s)	931
Zsp2I	ATGCAT	3 cut(s)	551, 595, 2418

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.